Subprocess on Windows

[HauHe]

It seems like on Windows the calling of snakemake from the python script via subprocess doesn't work.
A solution that works on Unix and Windows would be desirable.

[HauHe]

Since you work on Windows, I assume this works @trevorb1?

[trevorb1]

My computer is Windows, but I work in a Linux shell for coding. So I haven't tested the workflow on Windows before, @HauHe. :(

[HauHe]

Ah, damn, well I will see if it works later when trying to run it on our workstation...

[HauHe]

So, not sure if the issue is still subprocess related. In any case it now fail both when flagging glpk as solver and when flagging gurobi. In both case the lp-file for step_0 is created but it does not manage to run it. I thought it might be related to the copying of the osemosys file when running with glpk, but since the error seems the same with gurobi, I'm not sure...