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annotate.main.joined.e exist status: 6400 #64

@yougulianren

Description

@yougulianren

When I run ClinSV, errors has happened.
The command is :
docker run -v /project/ShareJH/Clinsv/clinsv/:/app/ref-data -v /project/JX1/04.sv/WGS1/:/app/project_folder -v /project/JX1/01.alignment/WGS1/:/app/input --entrypoint "perl" mrbradley2/clinsv:v1.1-dev /app/clinsv/bin/clinsv -r all -p /app/project_folder/ -i "/app/input/*.bam" -ref /app/ref-data/refdata-b38

clinsv/
├── refdata-b37
└── refdata-b38

/project/JX1/01.alignment/WGS1/
├── WGS1.sort.dup.bam
└── WGS1.sort.dup.bam.bai

error is:

executing: sh /app/project_folder/SVs/joined/sh/annotate.main.joined.sh &> /app/project_folder/SVs/joined/sh/annotate.main.joined.e ...

finished after (hh:mm:ss): 00:00:07

exist status: 6400

***** error exist status != 0 (6400), please check /app/project_folder/SVs/joined/sh/annotate.main.joined.e for more information

annotate.main.joined.e file is :
image

How to solve it?

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