From ba7699752a539f0dbd64e05212029465c7a1dbeb Mon Sep 17 00:00:00 2001 From: earx Date: Wed, 25 Jun 2025 13:48:11 +0200 Subject: [PATCH] add missing assign sign and base class --- bin/stats/site_variant_readers.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/bin/stats/site_variant_readers.py b/bin/stats/site_variant_readers.py index f352a59..ac0f243 100644 --- a/bin/stats/site_variant_readers.py +++ b/bin/stats/site_variant_readers.py @@ -191,7 +191,7 @@ def parse_strand(self) -> int: case _: raise Exception(f"Invalid strand value: {strand_str}") -class Jacusa2Reader(): +class Jacusa2Reader(RNAVariantReader): def __init__(self, file_handle: TextIO) -> None: self.file_handle: TextIO = file_handle @@ -220,7 +220,7 @@ def read(self) -> Optional[SiteVariantData]: case '+': strand = 1 case '-': - strand -1 + strand = -1 frequencies=np.int32(parts[JACUSA_FIELDS_INDEX["bases11"]].split(',') + [0])