From c1772105b1b5056b6ae764a4aa1cb1a0627d5048 Mon Sep 17 00:00:00 2001 From: earx Date: Thu, 17 Apr 2025 09:40:48 +0200 Subject: [PATCH] fix path for gff3 file --- nextflow.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nextflow.config b/nextflow.config index 542e1e4..975e589 100644 --- a/nextflow.config +++ b/nextflow.config @@ -55,7 +55,7 @@ profiles { params.aligner = "STAR" params.reads = "${baseDir}/data/chr21/chr21_small_R1.fastq.gz " params.genome = "${baseDir}/data/chr21/chr21_small.fasta.gz" - params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3" + params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3.gz" params.library_type = "ISR" params.read_type = "short_single" } @@ -64,7 +64,7 @@ profiles { params.aligner = "STAR" params.reads = "${baseDir}/data/chr21/" params.genome = "${baseDir}/data/chr21/chr21_small.fasta.gz" - params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3" + params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3.gz" params.library_type = "ISR" params.read_type = "short_paired" }