diff --git a/nextflow.config b/nextflow.config index b438f20..35bfc51 100644 --- a/nextflow.config +++ b/nextflow.config @@ -55,7 +55,7 @@ profiles { params.aligner = "STAR" params.reads = "${baseDir}/data/chr21/chr21_small_R1.fastq.gz " params.genome = "${baseDir}/data/chr21/chr21_small.fasta.gz" - params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3" + params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3.gz" params.library_type = "ISR" params.read_type = "short_single" } @@ -64,7 +64,7 @@ profiles { params.aligner = "STAR" params.reads = "${baseDir}/data/chr21/" params.genome = "${baseDir}/data/chr21/chr21_small.fasta.gz" - params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3" + params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3.gz" params.library_type = "ISR" params.read_type = "short_paired" }