create base config file for aline

Author: eascarrunz

config/ressources/base_aline.config

@@ -0,0 +1,7 @@
+process {
+    cpus = 1
+    time = '1h'
+    maxForks = 2
+    shell = ['/bin/bash', '-euo', 'pipefail']
+    stageOutMode = 'rsync'
+}

nextflow.config

@@ -51,15 +51,15 @@ profiles {
         includeConfig "$baseDir/config/ressources/local.config"
     }
     test {
-        params.aline_profiles = "${baseDir}/config/ressources/custom_aline.config" 
+        params.aline_profiles = "${baseDir}/config/ressources/base_aline.config" 
         params.aligner        = "STAR" 
         params.reads          = "${baseDir}/data/chr21/chr21_small_R1.fastq.gz "
         params.genome         = "${baseDir}/data/chr21/chr21_small.fasta.gz" 
         params.library_type   = "ISR" 
         params.read_type      = "short_single"
     }
     test2 {
-        params.aline_profiles = "${baseDir}/config/ressources/custom_aline.config" 
+        params.aline_profiles = "${baseDir}/config/ressources/base_aline.config" 
         params.aligner        = "STAR" 
         params.reads          = "${baseDir}/data/chr21/"
         params.genome         = "${baseDir}/data/chr21/chr21_small.fasta.gz"