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improve ressource usage
1 parent 4b1bee1 commit 68404b3

1 file changed

Lines changed: 10 additions & 14 deletions

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config/resources/hpc.config

Lines changed: 10 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -2,41 +2,37 @@ process {
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cpus = 1
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time = '4h'
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5-
withName: 'agat' {
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withLabel: 'agat' {
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cpus = 6
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time = '6h'
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}
9-
withName: 'fastqc' {
9+
withLabel: 'fastqc' {
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cpus = 8
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time = '6h'
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}
13-
withName: 'fastp' {
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withLabel: 'fastp' {
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cpus = 16
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time = '2d'
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}
17-
withName: 'hisat2_index' {
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withLabel: 'jacusa2' {
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cpus = 4
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time = '1h'
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}
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withName: 'hisat2' {
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cpus = 16
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time = '4d'
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time = '4h'
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}
25-
withName: 'jacusa2' {
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cpus = 4
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withLabel: 'pigz' {
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cpus = 8
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time = '4h'
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}
29-
withName: 'pluviometer' {
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withLabel: 'pluviometer' {
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cpus = 4
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time = '6h'
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memory = '48GB'
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errorStrategy = 'terminate'
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}
35-
withName: 'reditools3' {
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withLabel: 'reditools3' {
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cpus = 6
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time = '1d'
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}
39-
withName: 'samtools' {
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withLabel: 'samtools' {
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cpus = 16
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time = '4h'
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}

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