update to new input path

Juke34 · Juke34 · commit 10be9e2dbd27 · 2026-02-21T22:54:33.000+01:00
diff --git a/nextflow.config b/nextflow.config
@@ -60,7 +60,7 @@ profiles {
     }
     test_short_single_list {
         params.aligner        = "STAR" 
-        params.reads          = "${baseDir}/data/chr21/chr21_small_R1.fastq.gz,${baseDir}/data/chr21/chr21_small_R2.fastq.gz"
+        params.reads          = "${baseDir}/data/chr21/rain_chr21_small_R1.fastq.gz,${baseDir}/data/chr21/rain_chr21_small_R2.fastq.gz"
         params.genome         = "${baseDir}/data/chr21/chr21_small.fasta.gz"
         params.annotation     = "${baseDir}/data/chr21/chr21_small_filtered.gff3.gz"
         params.strandedness   = "ISR" 

Original file line number	Diff line number	Diff line change
`@@ -60,7 +60,7 @@ profiles {`
`60`	`60`	`}`
`61`	`61`	`test_short_single_list {`
`62`	`62`	`params.aligner = "STAR"`
`63`		`- params.reads = "${baseDir}/data/chr21/chr21_small_R1.fastq.gz,${baseDir}/data/chr21/chr21_small_R2.fastq.gz"`
	`63`	`+ params.reads = "${baseDir}/data/chr21/rain_chr21_small_R1.fastq.gz,${baseDir}/data/chr21/rain_chr21_small_R2.fastq.gz"`
`64`	`64`	`params.genome = "${baseDir}/data/chr21/chr21_small.fasta.gz"`
`65`	`65`	`params.annotation = "${baseDir}/data/chr21/chr21_small_filtered.gff3.gz"`
`66`	`66`	`params.strandedness = "ISR"`