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proteins always have exclusion volumes Sync to Compact Branch #83: Commit 67c6c2e pushed by sangmk
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minor change to simularium conversion Sync to Compact Branch #82: Commit e1377fb pushed by sangmk
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update the core orchrestration class for the new updates Sync to Compact Branch #81: Commit ea11f05 pushed by yingyue2030699
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ignore pml files Sync to Compact Branch #80: Commit cf766b2 pushed by yingyue2030699
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ion.Analyzer instead of ion.Analysis, it was a typo Sync to Compact Branch #79: Commit 562a162 pushed by sangmk
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Merge branch 'main' of https://github.com/JohnsonBiophysicsLab/ionerdss Sync to Compact Branch #78: Commit 47d0f71 pushed by sangmk
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Rename math to utils in tests Sync to Compact Branch #77: Commit 4f269ea pushed by yingyue2030699
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Merge branch 'main' of https://github.com/JohnsonBiophysicsLab/ionerdss Sync to Compact Branch #76: Commit afaf368 pushed by yingyue2030699
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add new error message to adaptive rates Sync to Compact Branch #75: Commit e6bf75f pushed by sangmk
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correct volume exclusion Sync to Compact Branch #74: Commit 590596f pushed by sangmk
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add unittest for homodimerize determination and interface process Sync to Compact Branch #73: Commit c6c4a14 pushed by yingyue2030699
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correct inputs to get_rule; fix integration test for adaptive rates Sync to Compact Branch #72: Commit 0e8e77e pushed by sangmk
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Update core pipeline Sync to Compact Branch #71: Commit 124e0fa pushed by yingyue2030699
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Update cluster group logic to require at least two aas per chain Sync to Compact Branch #70: Commit a4fd67d pushed by yingyue2030699
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support running repeats of Gillespie simulations and align results to… Sync to Compact Branch #69: Commit 642a98e pushed by sangmk
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support excluded volume; change usage of adaptive rates Sync to Compact Branch #68: Commit c47a502 pushed by sangmk
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better get adaptive rates; now Gillespie simulation won't change y0 Sync to Compact Branch #67: Commit 9d2f004 pushed by sangmk
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Merge branch 'main' of https://github.com/JohnsonBiophysicsLab/ionerdss Sync to Compact Branch #66: Commit 5bdc20e pushed by yingyue2030699
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Updated some __init__.py. Now you can import needed modules here and … Sync to Compact Branch #65: Commit 5855ea9 pushed by sangmk
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new lazy import (mimic scipy) Sync to Compact Branch #64: Commit c95386a pushed by sangmk
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trying to improve imports Sync to Compact Branch #63: Commit 8c2b236 pushed by sangmk
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Merge pull request #85 from JohnsonBiophysicsLab/env-refactor Sync to Compact Branch #62: Commit f049361 pushed by yingyue2030699
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sync proaffinity tests Sync to Compact Branch #61: Commit 0345798 pushed by sangmk
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Merge pull request #84 from JohnsonBiophysicsLab/Adaptive-rates-Gille… Sync to Compact Branch #60: Commit 673a087 pushed by sangmk
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Merge branch 'main' of https://github.com/JohnsonBiophysicsLab/ionerdss Sync to Compact Branch #59: Commit 66d2282 pushed by yingyue2030699
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