retain_percent variable not passed to extract_top_value function

[edgarfelizmenio]

Hi, I tried to play with the retain_percent parameter in the cell deconvolution tutorials but the results don't seem to change. Upon checking the source code, I found that the variable retain_percent in the function project_cell_to_spot is not passed to the extract_top_value function.

Here's the call to extract_top_value in the project_cell_to_spot function:

GraphST/GraphST/utils.py

Line 169 in d62b0b7

map_matrix = extract_top_value(map_matrix) # filtering by spot