Environment Setup for scReadSim #9
Description
Hi,
Thank you for creating and maintaining scReadSim! I’m using it to simulate scRNA-seq data to assess my quantification method, and I find this tool incredibly useful.
One thing that I found a bit challenging was setting up the proper environment, as it requires both R and Python. I also encountered the same issue regarding the Seurat version needing to be v4.4, along with some compatibility issues when installing the required packages individually during the tutorial.
Since it took me a while to resolve these issues, I thought it might be helpful to share the environment YAML file I created for setting up the necessary environment. This might save others some time. Please let me know if there’s already an existing file for this purpose that I may have missed.
sim_env.yaml.txt
Thank you again for this fantastic tool!
Best,
Yuan