Configuration files for SLURM?

[galeadmn]

Hello,
Has anyone ported the pipeline to the SLURM workload manager? If so, is the modified sys_OTHER.py file available? I am new to workload managers, and don't quite trust myself to get it right.
Thanks.

[blasseigne]

Hello, Unfortunately I'm not aware of anyone porting to SLURM. If you pursue this, please let me know. We'd be happy to make the modified files available, or point people to your github repo, if you'd like to share. Brittany N. Lasseigne, Ph.D. Senior Scientist, Myers Lab HudsonAlpha Institute for Biotechnology 601 Genome Way Huntsville, Alabama 35806 www.lasseigne.org

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On Wed, May 16, 2018 at 1:48 PM, galeadmn ***@***.***> wrote: Hello, Has anyone ported the pipeline to the SLURM workload manager? If so, is the modified sys_OTHER.py file available? I am new to workload managers, and don't quite trust myself to get it right. Thanks. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#11>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGL5tkU0Bk4rOrTp1dH4VkSEwPwZajsSks5tzHR1gaJpZM4UB19u> .

[galeadmn]

Thank you, Brittany. If I am successful in getting aRNApipe to work with SLURM, I will happily share the file with you. Cheers, Frank From: Brittany N. Lasseigne, PhD <notifications@github.com> Sent: Friday, May 18, 2018 6:16 AM To: HudsonAlpha/aRNAPipe <aRNAPipe@noreply.github.com> Cc: galeadmn <galeadmn@uw.edu>; Author <author@noreply.github.com> Subject: Re: [HudsonAlpha/aRNAPipe] Configuration files for SLURM? (#11) Hello, Unfortunately I'm not aware of anyone porting to SLURM. If you pursue this, please let me know. We'd be happy to make the modified files available, or point people to your github repo, if you'd like to share. Brittany N. Lasseigne, Ph.D. Senior Scientist, Myers Lab HudsonAlpha Institute for Biotechnology 601 Genome Way Huntsville, Alabama 35806 www.lasseigne.org<http://www.lasseigne.org>

On Wed, May 16, 2018 at 1:48 PM, galeadmn ***@***.******@***.***>> wrote: Hello, Has anyone ported the pipeline to the SLURM workload manager? If so, is the modified sys_OTHER.py file available? I am new to workload managers, and don't quite trust myself to get it right. Thanks. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#11>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGL5tkU0Bk4rOrTp1dH4VkSEwPwZajsSks5tzHR1gaJpZM4UB19u> .

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