Remove_withoutAnnotation_fromBLAST.sh

#!/bin/bash
# A simple script that removes BLASt hits without annotation in one of the model organisms

for out;
do
	echo Removing hits without annotation hits from $out
	grep -E 'ABG96268.1|ABG96269.1|ABG96270.1|ABG96271.1|ABG96274.1|ABG96317.1|ABG96318.1|ABG96319.1|ABG96320.1|ABG96321.1|ABG96324.1|ABG96325.1|ABG96326.1|ABG96327.1|ABG96328.1|ABG96374.1|ABG96377.1|ABG96378.1|ABG96379.1|ABG96380.1|ABG96381.1|ABG96382.1|ABG96384.1|ABG96385.1|ABG96435.1|ABG96436.1|ABG96437.1|ABG96438.1|ABG96465.1|ABG96469.1|ABG96470.1|ABG96474.1|ABG96475.1|ABG96477.1|ABG96478.1|ABG96479.1|ABG96481.1|ABG96482.1|ABG96483.1|ABG96484.1|ABG96485.1|ABG96486.1|ABG96487.1|ABG96488.1|ABG96489.1|ABG96490.1|ABG96491.1|ABG97568.1|ABG97569.1|ABG97572.1|ABG97573.1|ABG97574.1|ABG97575.1|ABG97576.1|ABG97577.1|ABG97578.1|ABG97579.1|ABG97580.1|ABG97588.1|ABG97589.1|ABG97590.1|ABG97591.1|ABG97592.1|ABG97593.1|ABG97594.1|ABG97595.1|ABG97596.1|ABG97597.1|ABG97598.1|ABG97599.1|ABG97600.1|ABG97601.1|ABG97602.1|ABG97603.1|ABG97604.1|ABG97605.1|ABG97606.1|ABG97607.1|ABG97610.1|Rv3494c|Rv3495c|Rv3496c|Rv3497c|Rv3498c|Rv3499c|Rv3500c|Rv3501c|Rv3502c|Rv3504|Rv3505|Rv3506|Rv3515c|Rv3516|Rv3518c|Rv3522|Rv3523|Rv3526|Rv3534c|Rv3535c|Rv3536c|Rv3537|Rv3538|Rv3540c|Rv3541c|Rv3542c|Rv3543c|Rv3544c|Rv3545c|Rv3546|Rv3550|Rv3551|Rv3552|Rv3553|Rv3556c|Rv3557c|Rv3560c|Rv3561|Rv3562|Rv3563|Rv3564|Rv3567c|Rv3568c|Rv3569c|Rv3570c|Rv3571|Rv3573c|Rv3574|ACY32018.1|ACY32019.1|ACY32020.1|ACY32021.1|ACY32022.1|ACY32023.1|ACY32024.1|ACY32025.1|ACY32026.1|ACY32027.1|ACY32028.1|ACY32029.1|ACY32030.1|ACY32033.1|ACY32034.1|ACY32035.1|ACY32036.1|ACY32037.1|ACY32038.1|ACY32039.1|ACY32052.1|ACY32055.1|ACY32066.1|ACY32068.1|ACY32069.1|ACY32077.1|ACY32078.1|ACY32079.1|ACY32080.1|ACY32081.1|ACY32082.1|ACY32084.1|ACY32085.1|ACY32086.1|ACY32093.1|ACY32094.1|ACY32097.1|ACY32098.1|ACY32099.1|ACY32100.1|ACY32101.1|ACY32102.1|ACY32103.1|ACY32104.1|ACY32105.1|ACY32106.1|ZP_11247022.1|ZP_11247024.1|ZP_11247025.1|ZP_11247026.1|ZP_11247028.1|ZP_11247029.1|ZP_11247031.1|ZP_11247032.1|ZP_11247033.1|ZP_11247034.1|ZP_11247035.1|ZP_11247039.1|ZP_11247040.1|ZP_11247043.1|ZP_11247044.1|ZP_11247045.1|ZP_11247046.1|ZP_11247047.1|ZP_11247048.1|ZP_11247049.1|ZP_11247050.1|ZP_11247051.1|ZP_11247056.1|ZP_11247057.1|ZP_11247059.1|ZP_11247060.1|ZP_11247061.1|ZP_11247062.1|ZP_11247063.1|ZP_11247067.1|ZP_11247068.1|ZP_11247069.1|ZP_11247070.1|ZP_11247071.1|ZP_11247072.1|ZP_11247073.1|ZP_11247074.1|ZP_11247075.1|ZP_11247076.1|ZP_11247077.1|ZP_11247078.1|ZP_11247085.1' $out > $out.txt
done
echo Done.
exit 0