Error working with PacBio reads: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte #20
Description
Performing the 1 iteration for error correction...
processing chunk 1...
Traceback (most recent call last):
File "/home/ant/miniconda3/envs/vechat/bin/vechat", line 303, in
run_error_correction(
File "/home/ant/miniconda3/envs/vechat/bin/vechat", line 48, in run_error_correction
sub_query_sequences = extract_sub_sequences(sequences,overlap,chunk_target_sequence)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ant/miniconda3/envs/vechat/bin/vechat", line 76, in extract_sub_sequences
mode=fq_or_fa(chunk_target_sequence)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/ant/miniconda3/envs/vechat/bin/vechat", line 152, in fq_or_fa
s = fr.readline()[0]
^^^^^^^^^^^^^
File "", line 322, in decode
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte