Calcium fluorescence processing crash - oopsi algorithm #1
Description
Hello
We are trying to convert some raw data to use with the SGC algorithm and are getting a crash during the oopsi algorithm.
Any advice is appreciated.
Thanks!
catubc
>> CALCIUM_FLUORESCENCE_PROCESSING( [ '/media/cat/4TBSSD/donato/' 'data' '/' 'HEX5_K5_medium__T1800s_dT500ms_cT1s_sKInf_eF10.0mHz_eM6_nS0' '_CALCIUM-FLUORESCENCE.mat' ] )
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:: PROCESS CALCIUM FLUORESCENCE
Prepare *_ACTIVITY-RASTER.MAT file for similarity-graph-clustering ...
significance threshold: 2STD
Elapsed time is 226.788281 seconds.
Prepare *_ACTIVITY-FIM-RASTER.DAT file for frequent-item-set-mining ...
Elapsed time is 1.187902 seconds.
Prepare *_SPIKE-PROBABILITY-RASTER.MAT file ...
Error:File: fast_oopsi.m Line: 195 Column: 42
Identifier 'b' is not a function or a shared variable. To share 'b' with nested function, initialize it in the current scope. For more information, see Sharing Variables Between Parent and Nested Functions.
Error in findDF_FSpikeProbability (line 25)
[ n_best(:,n) , P_best(n) , ~ , ~ ] = fast_oopsi( F , V , P );
Error in CALCIUM_FLUORESCENCE_PROCESSING (line 172)
[ ~ , spike_probability_raster , spike_probability_raster_thresholds , oopsi_deconvolution ] = findDF_FSpikeProbability( CALCIUM_FLUORESCENCE_mat.calcium_fluorescence.dF_F , CALCIUM_FLUORESCENCE_mat.parameter.dT_step ,
CALCIUM_FLUORESCENCE_mat.parameter.calcium_T1_2 );