Skip to content

pick_measure() needs to be more flexible #1

@gadenbuie

Description

@gadenbuie

I wrote pick_measure() assuming that columns in the cell segmentation data are named like

Entire Cell Opal 520 Mean

but I think that it's possible for these names to change based on settings in inForm because the phenoptr documentation shows

Entire Cell PDL1 (Opal 520) Mean

as a valid column name.

pick_measure() should be more like a tidyselect helper. I think I can use quotation inside gather_intensity() so that pick_measure() can get access to column names in the csd and from there I can use basic regex to pick the right name.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions