dsri_foco_habicon/setup.R at main · GeospatialCentroid/dsri_foco_habicon · GitHub

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# general setup script for all workflows


# install (if necessary) and load all required packages ----------------

packageLoad <-
  function(x) {
    for (i in 1:length(x)) {
      if (!x[i] %in% installed.packages()) {
        install.packages(x[i])
      }
      library(x[i], character.only = TRUE)
    }
  }


# vector of packages to load (add new packages to the end of this list)
packages <- c(
  'sf',
  "mapview",
  "ggpubr",
  "plotly",
  "tigris",
  "terra",
  "stars",
  "remotes",
  'devtools',
  "stars",
  "janitor",
  "akima",
  "tmap",
  "spocc",
  "furrr",
  "SDMtune",
  "ini",
  "tidycensus",
  "shiny",
  "patchwork",
  "leaflegend",
  "rmapshaper",
  "geojsonio")

# tack tidyverse on the end always to keep tidyverse functions as default for function conflicts
packages <- c(packages, "tidyverse")


packageLoad(packages)

# install github dev version of ENMeval to use parellization for null models
if (!"ENMeval" %in% installed.packages())
  {
  devtools::install_github("jamiemkass/ENMeval")

}

if (packageVersion("ENMeval") < "2.0.5") {
  devtools::install_github("jamiemkass/ENMeval")
}

library("ENMeval")


# install habicon
if (!"habicon" %in% installed.packages()) {

  devtools::install_github("ccmothes/habicon")

}

library(habicon)


# source all functions --------------------------

purrr::map(list.files(
  path = "src/",
  pattern = "*.R",
  full.names = TRUE,
  recursive = TRUE
),
source)