Repo Clean-Up

[ashispati]

Issue to track steps in repository code clean-up

1. Create 2 repositories to separate code and data
2. Data repository can be set up immediately - will contain annotations, assessments .txt files. Add the pyin contours to the gitignore and set up a one drive folder containing them for merging later. Possibly move the metadata_generation_scripts code to the data repo.
3. For code repository: we start with the scanning functions (adjust the paths) and then sequentially add clean code into the code repo
4. Write a detailed readme for each repo
5. Need to define a system for code nomenclature and refactor existing code
   • scripts shoud start with 'script'
   • functions should be 'verb' + 'subject' in a rough sense
   • remove scripts from all other folders except experiments
   • remove redundancy in code wherever we find
6. Think about add versioning to intermediate results such as pyin contours and feature matrices