Unable to get GCT scores in excel output.

[notmaurox]

I am trying to process samples and get GCT scores in the excel output file.

I think the issue comes from this line:

methylcheck/methylcheck/reports/bead_array.py

Line 638 in e3f4a74

if [v for v in self.gct_scores.values() if v is not None and np.isnan(v) is False] == []:

If I comment it out; GCT scores appear in the excel output. I think you might want to check
np.isnan(v) is True instead of np.isnan(v) is False

Cheers,
Mauro