methylcheck documentation .. mdinclude:: README.md .. toctree:: :maxdepth: 3 :caption: Contents: Loading Data <docs/loading-data.ipynb> Filtering Probes <docs/filtering-probes.ipynb> Quality Control <docs/quality-control-example.ipynb> Custom QC with pOOBAH <docs/poobah_filtering_tutorial.ipynb> Outlier Detection <docs/mds-example.ipynb> docs/source/modules methylprep (preprocessing) package <https://life-epigenetics-methylprep.readthedocs-hosted.com/en/latest/> methylize (analysis) package <https://life-epigenetics-methylize.readthedocs-hosted.com/en/latest/> Release History <docs/release-history.md> Indices and tables :ref:`genindex`