From 0567046b2786e04b3313fc03bbc745968ae1e09e Mon Sep 17 00:00:00 2001
From: Ewoud <eeopd@hotmail.com>
Date: Sun, 28 Oct 2018 17:18:13 +0100
Subject: [PATCH 1/2] Add example for the chifit (to be made still)

---
 examples/huispulsar_chifit/chifitparam.yml | 24 ++++++++++++++++++++++
 examples/huispulsar_chifit/getData.sh      |  4 ++++
 examples/huispulsar_chifit/run.sh          | 13 ++++++++++++
 3 files changed, 41 insertions(+)
 create mode 100644 examples/huispulsar_chifit/chifitparam.yml
 create mode 100755 examples/huispulsar_chifit/getData.sh
 create mode 100755 examples/huispulsar_chifit/run.sh

diff --git a/examples/huispulsar_chifit/chifitparam.yml b/examples/huispulsar_chifit/chifitparam.yml
new file mode 100644
index 0000000..342e6fd
--- /dev/null
+++ b/examples/huispulsar_chifit/chifitparam.yml
@@ -0,0 +1,24 @@
+# Information about the data file
+Observation:
+  FileName:       'B0329+54_10-04-2018.fits.gz'
+  RawData:        0                   # 1 for raw data, 0 for data with info
+
+# Folding parameters
+Folding:
+  nbins:          500           # Number of bins for folding 
+  nbinsdedisp:    500           # Number of bins for dedispersed profile
+
+# Output parameters
+Output:
+  OutputDir:      './output'
+  ConvertRaw:     1             # if raw convert to fits
+  
+# Chifit parameters
+ChiFit:
+  Plow:          0.70           # lower bound period
+  Phigh:         0.75           # higher bound period
+  Ntries:        1000           # Ntries
+  FitFunc:       'Lorentzian'   # Fit function Lorentzian or a absolute exponential
+
+
+
diff --git a/examples/huispulsar_chifit/getData.sh b/examples/huispulsar_chifit/getData.sh
new file mode 100755
index 0000000..6175e6c
--- /dev/null
+++ b/examples/huispulsar_chifit/getData.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+wget www.astro.rug.nl/~camras/data/obs-10-04-2018/B0329+54_10-04-2018.fits.gz
+
+
diff --git a/examples/huispulsar_chifit/run.sh b/examples/huispulsar_chifit/run.sh
new file mode 100755
index 0000000..009c399
--- /dev/null
+++ b/examples/huispulsar_chifit/run.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+# Download the observation data if it is not present
+if [ ! -e B0329+54_10-04-2018.fits.gz ]
+then 
+	echo "Dowloading the observation data"
+	./getData.sh
+fi
+
+# Run PSF
+echo "Run PSF"
+../../main.py huispulsarParam.yml
+

From 04cad3cc976e3851a2ce169e2b8a88f1333c5a32 Mon Sep 17 00:00:00 2001
From: Ewoud <eeopd@hotmail.com>
Date: Sun, 28 Oct 2018 17:19:27 +0100
Subject: [PATCH 2/2] Update the chifit example for new syntax +  run with a
 module system

---
 examples/huispulsar_chifit/chifitparam.yml | 24 ++++++++++------------
 examples/huispulsar_chifit/run.sh          |  7 +++++--
 2 files changed, 16 insertions(+), 15 deletions(-)

diff --git a/examples/huispulsar_chifit/chifitparam.yml b/examples/huispulsar_chifit/chifitparam.yml
index 342e6fd..8fca7e1 100644
--- a/examples/huispulsar_chifit/chifitparam.yml
+++ b/examples/huispulsar_chifit/chifitparam.yml
@@ -1,7 +1,6 @@
-# Information about the data file
-Observation:
-  FileName:       'B0329+54_10-04-2018.fits.gz'
-  RawData:        0                   # 1 for raw data, 0 for data with info
+# Information about the data file  
+
+FileName:       'B0329+54_10-04-2018.fits.gz'
 
 # Folding parameters
 Folding:
@@ -11,14 +10,13 @@ Folding:
 # Output parameters
 Output:
   OutputDir:      './output'
-  ConvertRaw:     1             # if raw convert to fits
-  
-# Chifit parameters
-ChiFit:
-  Plow:          0.70           # lower bound period
-  Phigh:         0.75           # higher bound period
-  Ntries:        1000           # Ntries
-  FitFunc:       'Lorentzian'   # Fit function Lorentzian or a absolute exponential
-
+  SavePlots:      true
 
+ChiFit: 
+  Ntries:      1000
+  nbins_time:  1000
+  nbins_freq:  1000
+  trywidth:    1e-3
+  FitFunc:     'Lorentzian'
 
+GrasMaaier: {}
diff --git a/examples/huispulsar_chifit/run.sh b/examples/huispulsar_chifit/run.sh
index 009c399..a43074a 100755
--- a/examples/huispulsar_chifit/run.sh
+++ b/examples/huispulsar_chifit/run.sh
@@ -9,5 +9,8 @@ fi
 
 # Run PSF
 echo "Run PSF"
-../../main.py huispulsarParam.yml
-
+if command -v python3 &>/dev/null; then
+    python3 ../../main.py huispulsarParam.yml
+else 
+    python ../../main.py huispulsarParam.yml
+fi