fetch-ensemblNN

#! /bin/bash
# For regex match, {,globs}

set -e
VSN=$1
[[ "$VSN" =~ ^[0-9][0-9][0-9]? ]] || {
    echo "Syntax: $0 <nn>

Create ./ensembl-branch-nn/ from cvs.sanger.ac.uk

REPLACING any existing directory of that name,

stripping the .git/ directories afterwards,

then committing to Git.
" >&2
    exit 1
}

# Check that we will party on the directory in the correct place
[ "$0" = "./fetch-ensemblNN" ] && [ -f "$PWD/fetch-ensemblNN" ] || {
    echo "$0 aborting: run from webvm-deps/ clone with ./fetch-ensemblNN" >&2
    exit 3
}
ENSDIR="$PWD/ensembl-branch-$VSN"

git diff --cached --quiet --exit-code && git diff --quiet --exit-code || {
    echo "$0 aborting: Working copy is not clean" >&2
    exit 2
}



[ -d $ENSDIR ] || existed=creat
rm -rf $ENSDIR
mkdir $ENSDIR

echo "== webvm-git fetch ensembl*  (needs standard team-tools PATH)"
for reponame in ensembl{,-compara,-variation,-funcgen}; do
    echo "=== fetch $reponame"
    _anacode_build_lib__ensembl $reponame "$ENSDIR" "$VSN"
done

echo "== webvm-git add & commit"
git add -A $ENSDIR
git commit -q -m "ran $( basename $0 ) - ${existed:-updat}ed $VSN"