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import argparse
import os
import time
import datetime
import pandas as pd
import torch
from torch import distributions
from torch.utils.data import DataLoader
from lib.dataloader import dataloader
from datasets import tabular_data
from src.icnn import FICNN, PICNN
from src.mapficnn import MapFICNN
from src.pcpmap import PCPMap
from src.mmd import mmd
from lib.utils import count_parameters, makedirs, get_logger, AverageMeter
"""
argument parser for hyper parameters and model handling
"""
parser = argparse.ArgumentParser('PCP-Map')
parser.add_argument(
'--data', choices=['wt_wine', 'rd_wine', 'parkinson'], type=str, default='rd_wine'
)
parser.add_argument('--input_x_dim', type=int, default=6, help="input data convex dimension")
parser.add_argument('--input_y_dim', type=int, default=5, help="input data non-convex dimension")
parser.add_argument('--feature_dim', type=int, default=64, help="intermediate layer feature dimension")
parser.add_argument('--feature_y_dim', type=int, default=5, help="intermediate layer context dimension")
parser.add_argument('--out_dim', type=int, default=1, help="output dimension")
parser.add_argument('--num_layers_fi', type=int, default=2, help="depth of FICNN network")
parser.add_argument('--num_layers_pi', type=int, default=2, help="depth of PICNN network")
parser.add_argument('--clip', type=bool, default=True, help="whether clipping the weights or not")
parser.add_argument('--tol', type=float, default=1e-12, help="LBFGS tolerance")
parser.add_argument('--batch_size', type=int, default=32, help="number of samples per batch")
parser.add_argument('--num_epochs', type=int, default=1000, help="number of training steps")
parser.add_argument('--print_freq', type=int, default=1, help="how often to print results to log")
parser.add_argument('--valid_freq', type=int, default=20, help="how often to run model on validation set")
parser.add_argument('--early_stopping', type=int, default=10, help="early stopping of training based on validation")
parser.add_argument('--lr', type=float, default=0.005, help="optimizer learning rate")
parser.add_argument("--lr_drop", type=float, default=2.0, help="how much to decrease lr (divide by)")
parser.add_argument('--test_ratio', type=float, default=0.10, help="test set ratio")
parser.add_argument('--valid_ratio', type=float, default=0.10, help="validation set ratio")
parser.add_argument('--random_state', type=int, default=42, help="random state for splitting dataset")
parser.add_argument('--save_test', type=int, default=1, help="if 1 then saves test numerics 0 if not")
parser.add_argument('--save', type=str, default='experiments/tabjoint', help="define the save directory")
args = parser.parse_args()
sStartTime = datetime.datetime.now().strftime("%Y_%m_%d_%H_%M_%S")
# logger
makedirs(args.save)
logger = get_logger(logpath=os.path.join(args.save, 'logs'), filepath=os.path.abspath(__file__), saving=True)
logger.info("start time: " + sStartTime)
logger.info(args)
# GPU Device
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
# decrease the learning rate based on validation
ndecs_ficnn = 0
n_vals_wo_improve_ficnn = 0
def update_lr_ficnn(optimizer, n_vals_without_improvement):
global ndecs_ficnn
if ndecs_ficnn == 0 and n_vals_without_improvement > args.early_stopping:
for param_group in optimizer.param_groups:
param_group["lr"] = args.lr / args.lr_drop
ndecs_ficnn = 1
elif ndecs_ficnn == 1 and n_vals_without_improvement > args.early_stopping:
for param_group in optimizer.param_groups:
param_group["lr"] = args.lr / args.lr_drop ** 2
ndecs_ficnn = 2
else:
ndecs_ficnn += 1
for param_group in optimizer.param_groups:
param_group["lr"] = args.lr / args.lr_drop**ndecs_ficnn
ndecs_picnn = 0
n_vals_wo_improve_picnn = 0
def update_lr_picnn(optimizer, n_vals_without_improvement):
global ndecs_picnn
if ndecs_picnn == 0 and n_vals_without_improvement > args.early_stopping:
for param_group in optimizer.param_groups:
param_group["lr"] = args.lr / args.lr_drop
ndecs_picnn = 1
elif ndecs_picnn == 1 and n_vals_without_improvement > args.early_stopping:
for param_group in optimizer.param_groups:
param_group["lr"] = args.lr / args.lr_drop**2
ndecs_picnn = 2
else:
ndecs_picnn += 1
for param_group in optimizer.param_groups:
param_group["lr"] = args.lr / args.lr_drop**ndecs_picnn
def load_data(dataset):
if dataset == 'wt_wine':
data = tabular_data.get_wt_wine()
elif dataset == 'rd_wine':
data = tabular_data.get_rd_wine()
elif dataset == 'parkinson':
data = tabular_data.get_parkinson()
else:
raise Exception("Dataset is Incorrect")
return data
def evaluate_model(ficnn_model, picnn_model, data, batch_size, test_ratio, valid_ratio, random_state, input_y_dim,
input_x_dim, tol, bestParams_ficnn, bestParams_picnn):
# load data
dataset = load_data(data)
dataset = tabular_data.process_data(dataset)
dataset = tabular_data.normalize_data(dataset)
dat = torch.tensor(dataset, dtype=torch.float32)
_, _, testData, _ = dataloader(data, batch_size, test_ratio, valid_ratio, random_state)
# load best model
ficnn_model.load_state_dict(bestParams_ficnn)
picnn_model.load_state_dict(bestParams_picnn)
# load test data
test_loader = DataLoader(
testData,
batch_size=batch_size, shuffle=True
)
# Obtain Test Metrics Numbers
testLossMeter = AverageMeter()
for test_sample in test_loader:
x_test = test_sample[:, input_y_dim:].requires_grad_(True).to(device)
y_test = test_sample[:, :input_y_dim].requires_grad_(True).to(device)
log_prob1 = ficnn_model.loglik_ficnn(y_test)
log_prob2 = picnn_model.loglik_picnn(x_test, y_test)
pb_mean_NLL = -(log_prob1 + log_prob2).mean()
testLossMeter.update(pb_mean_NLL.item(), test_sample.shape[0])
# Test Generated Samples
sample_size = dat.shape[0]
zy = torch.randn(sample_size, input_y_dim).to(device)
zx = torch.randn(sample_size, input_x_dim).to(device)
y_generated, _ = ficnn_model.gy(zy, tol=tol)
y_generated = y_generated.detach().to(device)
x_generated, _ = picnn_model.gx(zx, y_generated, tol=tol)
x_generated = x_generated.detach().to(device)
sample = torch.cat((y_generated, x_generated), dim=1)
# calculate MMD statistic
mean_max_dis = mmd(sample, dat.to(device))
return testLossMeter.avg, mean_max_dis.item()
"""
Training Process
"""
if __name__ == '__main__':
# load data
train_loader, valid_loader, _, train_size = dataloader(args.data, args.batch_size, args.test_ratio,
args.valid_ratio, args.random_state)
"""Construct Model"""
if args.clip is True:
reparam = False
else:
reparam = True
# Multivariate Gaussian as Reference
prior_ficnn = distributions.MultivariateNormal(torch.zeros(args.input_y_dim).to(device),
torch.eye(args.input_y_dim).to(device))
prior_picnn = distributions.MultivariateNormal(torch.zeros(args.input_x_dim).to(device),
torch.eye(args.input_x_dim).to(device))
# build FICNN map and PCP-Map
ficnn = FICNN(args.input_y_dim, args.feature_dim, args.out_dim, args.num_layers_fi, reparam=reparam)
picnn = PICNN(args.input_x_dim, args.input_y_dim, args.feature_dim, args.feature_y_dim,
args.out_dim, args.num_layers_pi, reparam=reparam)
map_ficnn = MapFICNN(prior_ficnn, ficnn).to(device)
map_picnn = PCPMap(prior_picnn, picnn).to(device)
optimizer1 = torch.optim.Adam(map_ficnn.parameters(), lr=args.lr)
optimizer2 = torch.optim.Adam(map_picnn.parameters(), lr=args.lr)
"""Initial Logs"""
strTitle = args.data + '_' + sStartTime + '_' + str(args.batch_size) + '_' + str(args.lr) + \
'_' + str(args.num_layers_fi) + '_' + str(args.feature_dim)
logger.info("--------------------------------------------------")
logger.info("Number of trainable parameters: {}".format(count_parameters(ficnn) + count_parameters(picnn)))
logger.info("--------------------------------------------------")
logger.info(str(optimizer1)) # optimizer info
logger.info(str(optimizer2))
logger.info("--------------------------------------------------")
logger.info("device={:}".format(device))
logger.info("saveLocation = {:}".format(args.save))
logger.info("--------------------------------------------------\n")
columns_train = ["epoch", "step", "time/trnstep", "train_loss_f", "train_loss_p"]
columns_valid = ["time/vldstep", "valid_loss_f", "valid_loss_p"]
train_hist = pd.DataFrame(columns=columns_train)
valid_hist = pd.DataFrame(columns=columns_valid)
logger.info(["iter"] + columns_train)
"""Training Starts"""
itr = 1
total_itr = (int(train_size / args.batch_size) + 1) * args.num_epochs
best_loss_ficnn = float('inf')
best_loss_picnn = float('inf')
bestParams_ficnn = None
bestParams_picnn = None
makedirs(args.save)
timeMeter = AverageMeter()
vldTotTimeMeter = AverageMeter()
for epoch in range(args.num_epochs):
for i, sample in enumerate(train_loader):
x = sample[:, args.input_y_dim:].requires_grad_(True).to(device)
y = sample[:, :args.input_y_dim].requires_grad_(True).to(device)
# start timer
end = time.time()
# optimizer step for FICNN map
optimizer1.zero_grad()
loss1 = -map_ficnn.loglik_ficnn(y).mean()
loss1.backward()
optimizer1.step()
# non-negative constraint
if args.clip is True:
for lz in map_ficnn.ficnn.Lz:
with torch.no_grad():
lz.weight.data = map_ficnn.ficnn.nonneg(lz.weight)
# optimizer step for PCP-Map
optimizer2.zero_grad()
loss2 = -map_picnn.loglik_picnn(x, y).mean()
loss2.backward()
optimizer2.step()
# non-negative constraint
if args.clip is True:
for lw in map_picnn.picnn.Lw:
with torch.no_grad():
lw.weight.data = map_picnn.picnn.nonneg(lw.weight)
# end timer
step_time = time.time() - end
timeMeter.update(step_time)
train_hist.loc[len(train_hist.index)] = [epoch + 1, i + 1, step_time, loss1.item(), loss2.item()]
# printing
if itr % args.print_freq == 0:
log_message = (
'{:05d} {:7.1f} {:04d} {:9.3e} {:9.3e} {:9.3e} '.format(
itr, epoch + 1, i + 1, step_time, loss1.item(), loss2.item()
)
)
logger.info(log_message)
if itr % args.valid_freq == 0 or itr % total_itr == 0:
valLossMeterFICNN = AverageMeter()
valLossMeterPICNN = AverageMeter()
vldtimeMeter = AverageMeter()
for valid_sample in valid_loader:
x_valid = valid_sample[:, args.input_y_dim:].requires_grad_(True).to(device)
y_valid = valid_sample[:, :args.input_y_dim].requires_grad_(True).to(device)
# start timer
end_vld = time.time()
mean_valid_loss_ficnn = -map_ficnn.loglik_ficnn(y_valid).mean()
mean_valid_loss_picnn = -map_picnn.loglik_picnn(x_valid, y_valid).mean()
# end timer
vldstep_time = time.time() - end_vld
vldtimeMeter.update(vldstep_time)
valLossMeterFICNN.update(mean_valid_loss_ficnn.item(), valid_sample.shape[0])
valLossMeterPICNN.update(mean_valid_loss_picnn.item(), valid_sample.shape[0])
vldTotTimeMeter.update(vldtimeMeter.sum)
valid_hist.loc[len(valid_hist.index)] = [vldtimeMeter.sum, valLossMeterFICNN.avg, valLossMeterPICNN.avg]
log_message_valid = ' {:9.3e} {:9.3e} {:9.3e} '.format(
vldtimeMeter.sum, valLossMeterFICNN.avg, valLossMeterPICNN.avg
)
if valLossMeterFICNN.avg < best_loss_ficnn:
n_vals_wo_improve_ficnn = 0
best_loss_ficnn = valLossMeterFICNN.avg
makedirs(args.save)
bestParams_ficnn = map_ficnn.state_dict()
torch.save({
'args': args,
'state_dict_ficnn': bestParams_ficnn,
'state_dict_picnn': bestParams_picnn,
}, os.path.join(args.save, strTitle + '_checkpt.pth'))
else:
n_vals_wo_improve_ficnn += 1
log_message_valid += ' ficnn no improve: {:d}/{:d} '.format(n_vals_wo_improve_ficnn,
args.early_stopping)
if valLossMeterPICNN.avg < best_loss_picnn:
n_vals_wo_improve_picnn = 0
best_loss_picnn = valLossMeterPICNN.avg
makedirs(args.save)
bestParams_picnn = map_picnn.state_dict()
torch.save({
'args': args,
'state_dict_ficnn': bestParams_ficnn,
'state_dict_picnn': bestParams_picnn,
}, os.path.join(args.save, strTitle + '_checkpt.pth'))
else:
n_vals_wo_improve_picnn += 1
log_message_valid += ' picnn no improve: {:d}/{:d}'.format(n_vals_wo_improve_picnn,
args.early_stopping)
logger.info(columns_valid)
logger.info(log_message_valid)
logger.info(["iter"] + columns_train)
# update learning rate
if n_vals_wo_improve_ficnn > args.early_stopping:
if ndecs_ficnn > 2:
logger.info("early stopping engaged")
logger.info("Training Time: {:} seconds".format(timeMeter.sum))
logger.info("Validation Time: {:} seconds".format(vldTotTimeMeter.sum))
train_hist.to_csv(os.path.join(args.save, '%s_train_hist.csv' % strTitle))
valid_hist.to_csv(os.path.join(args.save, '%s_valid_hist.csv' % strTitle))
if bool(args.save_test) is False:
exit(0)
NLL, MMD = evaluate_model(map_ficnn, map_picnn, args.data, args.batch_size, args.test_ratio,
args.valid_ratio, args.random_state, args.input_y_dim, args.input_x_dim,
args.tol, bestParams_ficnn, bestParams_picnn)
columns_test = ["batch_size", "lr", "width", "width_y", "depth", "NLL", "MMD", "time", "iter"]
test_hist = pd.DataFrame(columns=columns_test)
test_hist.loc[len(test_hist.index)] = [args.batch_size, args.lr, args.feature_dim, args.feature_y_dim,
args.num_layers_pi, NLL, MMD, timeMeter.sum, itr]
testfile_name = '.../PCP-Map/experiments/tabjoint/' + args.data + '_test_hist.csv'
if os.path.isfile(testfile_name):
test_hist.to_csv(testfile_name, mode='a', index=False, header=False)
else:
test_hist.to_csv(testfile_name, index=False)
exit(0)
else:
update_lr_ficnn(optimizer1, n_vals_wo_improve_ficnn)
n_vals_wo_improve_ficnn = 0
if n_vals_wo_improve_picnn > args.early_stopping:
if ndecs_picnn > 2:
logger.info("early stopping engaged")
logger.info("Training Time: {:} seconds".format(timeMeter.sum))
logger.info("Validation Time: {:} seconds".format(vldTotTimeMeter.sum))
train_hist.to_csv(os.path.join(args.save, '%s_train_hist.csv' % strTitle))
valid_hist.to_csv(os.path.join(args.save, '%s_valid_hist.csv' % strTitle))
if bool(args.save_test) is False:
exit(0)
NLL, MMD = evaluate_model(map_ficnn, map_picnn, args.data, args.batch_size, args.test_ratio,
args.valid_ratio, args.random_state, args.input_y_dim, args.input_x_dim,
args.tol, bestParams_ficnn, bestParams_picnn)
columns_test = ["batch_size", "lr", "width", "width_y", "depth", "NLL", "MMD", "time", "iter"]
test_hist = pd.DataFrame(columns=columns_test)
test_hist.loc[len(test_hist.index)] = [args.batch_size, args.lr, args.feature_dim, args.feature_y_dim,
args.num_layers_pi, NLL, MMD, timeMeter.sum, itr]
testfile_name = '.../PCP-Map/experiments/tabjoint/' + args.data + '_test_hist.csv'
if os.path.isfile(testfile_name):
test_hist.to_csv(testfile_name, mode='a', index=False, header=False)
else:
test_hist.to_csv(testfile_name, index=False)
exit(0)
else:
update_lr_picnn(optimizer2, n_vals_wo_improve_picnn)
n_vals_wo_improve_picnn = 0
itr += 1
print('Training time: %.2f secs' % timeMeter.sum)
print('Validation time: %.2f secs' % vldTotTimeMeter.sum)
train_hist.to_csv(os.path.join(args.save, '%s_train_hist.csv' % strTitle))
valid_hist.to_csv(os.path.join(args.save, '%s_valid_hist.csv' % strTitle))
if bool(args.save_test) is False:
exit(0)
NLL, MMD = evaluate_model(map_ficnn, map_picnn, args.data, args.batch_size, args.test_ratio,
args.valid_ratio, args.random_state, args.input_y_dim, args.input_x_dim,
args.tol, bestParams_ficnn, bestParams_picnn)
columns_test = ["batch_size", "lr", "width", "width_y", "depth", "NLL", "MMD", "time", "iter"]
test_hist = pd.DataFrame(columns=columns_test)
test_hist.loc[len(test_hist.index)] = [args.batch_size, args.lr, args.feature_dim, args.feature_y_dim,
args.num_layers_pi, NLL, MMD, timeMeter.sum, itr]
testfile_name = '.../PCP-Map/experiments/tabjoint/' + args.data + '_test_hist.csv'
if os.path.isfile(testfile_name):
test_hist.to_csv(testfile_name, mode='a', index=False, header=False)
else:
test_hist.to_csv(testfile_name, index=False)