Addressing main PR comments #82
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| # name: "Windows tests" | |
| # on: | |
| # push: | |
| # paths: | |
| # # runs e.g. when version updated, module added, or dependency added | |
| # - "pyproject.toml" | |
| # pull_request: | |
| # paths: | |
| # - "pyproject.toml" | |
| # jobs: | |
| # unit_tests: | |
| # runs-on: windows-latest | |
| # timeout-minutes: 10 | |
| # env: | |
| # # GitHub currently has 4 cores available for Windows runners | |
| # # https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners/about-github-hosted-runners#standard-github-hosted-runners-for-public-repositories | |
| # worker_cores: 4 | |
| # steps: | |
| # - uses: actions/checkout@v4 | |
| # # Set up Windows with C++ for numpy | |
| # - name: "Visual Studio Command Prompt tool" | |
| # run: cmd "C:\Program Files (x86)\Microsoft Visual Studio\2019\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" ${{ matrix.platform-vcvars }} | |
| # - uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: "3.12" | |
| # cache: "pip" | |
| # - name: "Cache pip" | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: | | |
| # ~\AppData\Local\pip\Cache | |
| # ~\AppData\Local\Programs\Python\Python312\Lib\site-packages | |
| # key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }} | |
| # restore-keys: | | |
| # ${{ runner.os }}-pip- | |
| # - name: "Install MultiQC" | |
| # run: pip install '.[dev]' | |
| # # NB: Download zip file instead of git clone, as Windows complains about reserved filenames and certain characters | |
| # - name: "Download test data" | |
| # run: | | |
| # curl -fsSL https://github.com/MultiQC/test-data/archive/main.zip -o test-data.zip | |
| # 7z x test-data.zip -y -o"test-data" | |
| # # Flat plot export doesn't work on Windows, so forcing modules like somalier and peddy write interactive. | |
| # # Also, forcing selected modules to be run. Some modules don't work when dumping plot json: | |
| # # UnicodeEncodeError: 'charmap' codec can't encode character '\u2265' in position 1: character maps to <undefined> | |
| # - run: | | |
| # multiqc --strict --interactive -m fastqc -m samtools -m kallisto -v test-data\test-data-main\data\modules\ |