From d84e379b6ce6cd0e8c4672e5056279b3cc643827 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Thu, 19 Dec 2024 11:53:57 +0100
Subject: [PATCH 01/66] serialize by default all category attributes (#175)

---
 lib/ontologies_linked_data/models/category.rb | 1 +
 1 file changed, 1 insertion(+)

diff --git a/lib/ontologies_linked_data/models/category.rb b/lib/ontologies_linked_data/models/category.rb
index a92b8a96..ba585fe8 100644
--- a/lib/ontologies_linked_data/models/category.rb
+++ b/lib/ontologies_linked_data/models/category.rb
@@ -9,6 +9,7 @@ class Category < LinkedData::Models::Base
       attribute :parentCategory, enforce: [:category, :list]
       attribute :ontologies, inverse: { on: :ontology, attribute: :hasDomain }
 
+      serialize_default :acronym, :name, :description, :created, :parentCategory, :ontologies
       cache_timeout 86400
     end
   end

From e65d887616aaf4ae6f099437223d86515ffdca79 Mon Sep 17 00:00:00 2001
From: Syphax bouazzouni <gs_bouazzouni@esi.dz>
Date: Tue, 14 Jan 2025 17:37:46 +0100
Subject: [PATCH 02/66] add option to skip archiving in ontology deletion
 (#178)

---
 lib/ontologies_linked_data/models/ontology.rb            | 3 ++-
 lib/ontologies_linked_data/models/ontology_submission.rb | 3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/lib/ontologies_linked_data/models/ontology.rb b/lib/ontologies_linked_data/models/ontology.rb
index 358657b2..9b93fc8a 100644
--- a/lib/ontologies_linked_data/models/ontology.rb
+++ b/lib/ontologies_linked_data/models/ontology.rb
@@ -375,6 +375,7 @@ def delete(*args)
         args.each {|e| options.merge!(e) if e.is_a?(Hash)}
         in_update = options[:in_update] || false
         index_commit = options[:index_commit] == false ? false : true
+        skip_archive = options.key?(:skip_archiving) && options[:skip_archiving]
 
         # remove notes
         self.bring(:notes)
@@ -414,7 +415,7 @@ def delete(*args)
         self.bring(:acronym) if self.bring?(:acronym)
         unless self.submissions.nil?
           self.submissions.each do |s|
-            s.delete(in_update: in_update, remove_index: false)
+            s.delete(in_update: in_update, remove_index: false, skip_archiving: skip_archive)
           end
         end
 
diff --git a/lib/ontologies_linked_data/models/ontology_submission.rb b/lib/ontologies_linked_data/models/ontology_submission.rb
index f7dfdb27..be03065a 100644
--- a/lib/ontologies_linked_data/models/ontology_submission.rb
+++ b/lib/ontologies_linked_data/models/ontology_submission.rb
@@ -636,6 +636,7 @@ def delete(*args)
         args.each { |e| options.merge!(e) if e.is_a?(Hash) }
         remove_index = options[:remove_index] ? true : false
         index_commit = options[:index_commit] == false ? false : true
+        skip_archive = options.key?(:skip_archiving) && options[:skip_archiving]
 
         super(*args)
         self.ontology.unindex_all_data(index_commit)
@@ -657,7 +658,7 @@ def delete(*args)
           end
         end
 
-        self.archive(force: true)
+        self.archive(force: true) unless skip_archive
 
         # delete the folder and files
         FileUtils.remove_dir(self.data_folder) if Dir.exist?(self.data_folder)

From 0aa6219c44143b94135e01c78eb94ad99a5e8b32 Mon Sep 17 00:00:00 2001
From: Syphax bouazzouni <gs_bouazzouni@esi.dz>
Date: Wed, 15 Jan 2025 23:47:58 +0100
Subject: [PATCH 03/66] Feature: Optimize mappings migration in ontology
 process  (#179)

* paginate and regex filter to migrate_rest_mappings

* fix diff error exception handling
---
 .../mappings/mappings.rb                      | 40 ++++++++++++-------
 .../models/ontology_submission.rb             |  2 +-
 .../operations/submission_diff_generator.rb   |  4 +-
 3 files changed, 28 insertions(+), 18 deletions(-)

diff --git a/lib/ontologies_linked_data/mappings/mappings.rb b/lib/ontologies_linked_data/mappings/mappings.rb
index 093d2c73..6f0fde64 100644
--- a/lib/ontologies_linked_data/mappings/mappings.rb
+++ b/lib/ontologies_linked_data/mappings/mappings.rb
@@ -226,24 +226,36 @@ def self.read_only_class(classId, submissionId)
     end
 
     def self.migrate_rest_mappings(acronym)
-      mappings = LinkedData::Models::RestBackupMapping
-                   .where.include(:uuid, :class_urns, :process).all
-      if mappings.length == 0
-        return []
-      end
+      page = 1
+      size = 1000
+      total_count = 0
       triples = []
 
-      rest_predicate = mapping_predicates()["REST"][0]
-      mappings.each do |m|
-        m.class_urns.each do |u|
-          u = u.to_s
-          if u.start_with?("urn:#{acronym}")
-            class_id = u.split(":")[2..-1].join(":")
-            triples <<
-              " <#{class_id}> <#{rest_predicate}> <#{m.id}> . "
+      f = Goo::Filter.new(:class_urns).regex("urn:#{acronym}:")
+
+      while total_count != 0 || page == 1
+        mappings = LinkedData::Models::RestBackupMapping
+                     .where.include(:uuid, :class_urns, :process)
+                     .page(page, size).filter(f)
+                     .all
+
+        puts "page #{page} size #{size} count #{mappings.size}"
+        page += 1
+        total_count = mappings.size
+
+        rest_predicate = mapping_predicates()["REST"][0]
+        mappings.each do |m|
+          m.class_urns.each do |u|
+            u = u.to_s
+            if u.start_with?("urn:#{acronym}")
+              class_id = u.split(":")[2..-1].join(":")
+              triples <<
+                " <#{class_id}> <#{rest_predicate}> <#{m.id}> . "
+            end
           end
         end
       end
+
       return triples
     end
 
@@ -725,4 +737,4 @@ def self.extract_acronym(submission)
     end
 
   end
-end
\ No newline at end of file
+end
diff --git a/lib/ontologies_linked_data/models/ontology_submission.rb b/lib/ontologies_linked_data/models/ontology_submission.rb
index be03065a..53f4cf28 100644
--- a/lib/ontologies_linked_data/models/ontology_submission.rb
+++ b/lib/ontologies_linked_data/models/ontology_submission.rb
@@ -286,7 +286,7 @@ def self.copy_file_repository(acronym, submissionId, src, filename = nil)
         name = filename.nil? ? File.basename(File.new(src).path) : File.basename(filename)
         # THIS LOGGER IS JUST FOR DEBUG - remove after NCBO-795 is closed
         logger = Logger.new(Dir.pwd + "/create_permissions.log")
-        if not Dir.exist? path_to_repo
+        unless Dir.exist? path_to_repo
           FileUtils.mkdir_p path_to_repo
           logger.debug("Dir created #{path_to_repo} | #{"%o" % File.stat(path_to_repo).mode} | umask: #{File.umask}") # NCBO-795
         end
diff --git a/lib/ontologies_linked_data/services/submission_process/operations/submission_diff_generator.rb b/lib/ontologies_linked_data/services/submission_process/operations/submission_diff_generator.rb
index b6dda351..97e477a2 100644
--- a/lib/ontologies_linked_data/services/submission_process/operations/submission_diff_generator.rb
+++ b/lib/ontologies_linked_data/services/submission_process/operations/submission_diff_generator.rb
@@ -72,7 +72,7 @@ def generate_diff(logger, diff_tool)
           @submission.save
           logger.info("Diff generated successfully for #{@submission.id}")
           logger.flush
-        rescue StoreError => e
+        rescue Exception => e
           logger.error("Diff process for #{@submission.id} failed - #{e.class}: #{e.message}")
           logger.flush
           raise e
@@ -82,5 +82,3 @@ def generate_diff(logger, diff_tool)
     end
   end
 end
-
-

From 5e636182d11cefd40df23e4394fc714dc0d7f1c5 Mon Sep 17 00:00:00 2001
From: Syphax bouazzouni <gs_bouazzouni@esi.dz>
Date: Tue, 21 Jan 2025 21:39:59 +0100
Subject: [PATCH 04/66] Feature: refactor mapping count module to simplify the
 code (#172)

* refactor mapping count to simplify the code

* clean the mapping_counts method

* don't use delete_zombie_mapping_count in total mapping count

* extract some smaller function in mappings counts
---
 .../concerns/mappings/mapping_counts.rb       | 284 +++++++-----------
 test/models/test_mappings.rb                  | 151 ++++++----
 2 files changed, 195 insertions(+), 240 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/mappings/mapping_counts.rb b/lib/ontologies_linked_data/concerns/mappings/mapping_counts.rb
index ea692f44..b3324a57 100644
--- a/lib/ontologies_linked_data/concerns/mappings/mapping_counts.rb
+++ b/lib/ontologies_linked_data/concerns/mappings/mapping_counts.rb
@@ -2,68 +2,34 @@ module LinkedData
   module Concerns
     module Mappings
       module Count
-        def mapping_counts(enable_debug = false, logger = nil, reload_cache = false, arr_acronyms = [])
+        def mapping_counts(enable_debug, logger, reload_cache = false, arr_acronyms = [])
           logger = nil unless enable_debug
-          t = Time.now
-          latest = self.retrieve_latest_submissions(options = { acronyms: arr_acronyms })
+          start_time = Time.now
           counts = {}
-          # Counting for External mappings
-          t0 = Time.now
-          external_uri = LinkedData::Models::ExternalClass.graph_uri
-          exter_counts = mapping_ontologies_count(external_uri, nil, reload_cache = reload_cache)
-          exter_total = 0
-          exter_counts.each do |k, v|
-            exter_total += v
-          end
-          counts[external_uri.to_s] = exter_total
-          logger.info("Time for External Mappings took #{Time.now - t0} sec. records #{exter_total}") if enable_debug
-          LinkedData.settings.interportal_hash ||= {}
-          # Counting for Interportal mappings
-          LinkedData.settings.interportal_hash.each_key do |acro|
-            t0 = Time.now
-            interportal_uri = LinkedData::Models::InterportalClass.graph_uri(acro)
-            inter_counts = mapping_ontologies_count(interportal_uri, nil, reload_cache = reload_cache)
-            inter_total = 0
-            inter_counts.each do |k, v|
-              inter_total += v
-            end
-            counts[interportal_uri.to_s] = inter_total
-            if enable_debug
-              logger.info("Time for #{interportal_uri.to_s} took #{Time.now - t0} sec. records #{inter_total}")
-            end
-          end
-          # Counting for mappings between the ontologies hosted by the BioPortal appliance
-          i = 0
-          epr = Goo.sparql_query_client(:main)
-
-          latest.each do |acro, sub|
-            self.handle_triple_store_downtime(logger) if Goo.backend_4s?
-            t0 = Time.now
-            s_counts = self.mapping_ontologies_count(sub, nil, reload_cache = reload_cache)
-            s_total = 0
-
-            s_counts.each do |k, v|
-              s_total += v
-            end
-            counts[acro] = s_total
-            i += 1
 
-            next unless enable_debug
+          # Process External and Interportal Mappings
+          counts[LinkedData::Models::ExternalClass.graph_uri.to_s] = calculate_and_log_counts(
+            LinkedData::Models::ExternalClass.graph_uri, logger, reload_cache, 'External Mappings', enable_debug
+          )
 
-            logger.info("#{i}/#{latest.count} " +
-                          "Retrieved #{s_total} records for #{acro} in #{Time.now - t0} seconds.")
-            logger.flush
+          LinkedData.settings.interportal_hash&.each_key do |acro|
+            uri = LinkedData::Models::InterportalClass.graph_uri(acro)
+            counts[uri.to_s] =
+              calculate_and_log_counts(uri, logger, reload_cache, "Interportal Mappings for #{acro}", enable_debug)
           end
 
-          if enable_debug
-            logger.info("Total time #{Time.now - t} sec.")
-            logger.flush
+          # Process Hosted Ontologies
+          retrieve_latest_submissions(acronyms: arr_acronyms).each_with_index do |(acro, sub), index|
+            counts[acro] =
+              calculate_and_log_counts(sub, logger, reload_cache, "Hosted Ontology #{acro} (#{index + 1})", enable_debug)
           end
-          return counts
+
+          logger&.info("Total time #{Time.now - start_time} sec.") if enable_debug
+          counts
         end
 
         def create_mapping_counts(logger, arr_acronyms = [])
-          ont_msg = arr_acronyms.empty? ? "all ontologies" : "ontologies [#{arr_acronyms.join(', ')}]"
+          ont_msg = arr_acronyms.empty? ? 'all ontologies' : "ontologies [#{arr_acronyms.join(', ')}]"
 
           time = Benchmark.realtime do
             create_mapping_count_totals_for_ontologies(logger, arr_acronyms)
@@ -79,20 +45,10 @@ def create_mapping_counts(logger, arr_acronyms = [])
         end
 
         def create_mapping_count_totals_for_ontologies(logger, arr_acronyms)
-          new_counts = mapping_counts(enable_debug = true, logger = logger, reload_cache = true, arr_acronyms)
-          persistent_counts = {}
-          f = Goo::Filter.new(:pair_count) == false
-
-          LinkedData::Models::MappingCount.where.filter(f)
-                                          .include(:ontologies, :count)
-                                          .include(:all)
-                                          .all
-                                          .each do |m|
-            persistent_counts[m.ontologies.first] = m
-          end
-
-          latest = self.retrieve_latest_submissions(options = { acronyms: arr_acronyms })
-          delete_zombie_mapping_count(persistent_counts.values, latest.values.compact.map { |sub| sub.ontology.acronym })
+          new_counts = mapping_counts(true, logger, true, arr_acronyms)
+          persistent_counts = all_existent_mapping_counts(pair_count: false)
+          latest = retrieve_latest_submissions
+          delete_zombie_submission_count(persistent_counts, latest)
 
           num_counts = new_counts.keys.length
           ctr = 0
@@ -100,137 +56,52 @@ def create_mapping_count_totals_for_ontologies(logger, arr_acronyms)
           new_counts.each_key do |acr|
             new_count = new_counts[acr]
             ctr += 1
-
-            if persistent_counts.include?(acr)
-              inst = persistent_counts[acr]
-              if new_count.zero?
-                inst.delete if inst.persistent?
-              elsif new_count != inst.count
-                inst.bring_remaining
-                inst.count = new_count
-
-                begin
-                  if inst.valid?
-                    inst.save
-                  else
-                    logger.error("Error updating mapping count for #{acr}: #{inst.id.to_s}. #{inst.errors}")
-                    next
-                  end
-                rescue Exception => e
-                  logger.error("Exception updating mapping count for #{acr}: #{inst.id.to_s}. #{e.class}: #{e.message}\n#{e.backtrace.join("\n")}")
-                  next
-                end
-              end
-            else
-              m = LinkedData::Models::MappingCount.new
-              m.ontologies = [acr]
-              m.pair_count = false
-              m.count = new_count
-
-              begin
-                if m.valid?
-                  m.save
-                else
-                  logger.error("Error saving new mapping count for #{acr}. #{m.errors}")
-                  next
-                end
-              rescue Exception => e
-                logger.error("Exception saving new mapping count for #{acr}. #{e.class}: #{e.message}\n#{e.backtrace.join("\n")}")
-                next
-              end
-            end
+            update_mapping_count(persistent_counts, new_counts, acr, acr, new_count, false)
             remaining = num_counts - ctr
-            logger.info("Total mapping count saved for #{acr}: #{new_count}. " << ((remaining.positive?) ? "#{remaining} counts remaining..." : "All done!"))
+            logger.info("Total mapping count saved for #{acr}: #{new_count}. " << (remaining.positive? ? "#{remaining} counts remaining..." : 'All done!'))
           end
         end
 
         # This generates pair mapping counts for the given
         # ontologies to ALL other ontologies in the system
         def create_mapping_count_pairs_for_ontologies(logger, arr_acronyms)
+          all_latest_submissions = retrieve_latest_submissions
+          latest_submissions = if Array(arr_acronyms).empty?
+                                 all_latest_submissions
+                               else
+                                 all_latest_submissions.select { |k, _v| arr_acronyms.include?(k) }
+                               end
 
-          latest_submissions = self.retrieve_latest_submissions(options = { acronyms: arr_acronyms })
-          all_latest_submissions = self.retrieve_latest_submissions
           ont_total = latest_submissions.length
           logger.info("There is a total of #{ont_total} ontologies to process...")
           ont_ctr = 0
-          # filename = 'mapping_pairs.ttl'
-          # temp_dir = Dir.tmpdir
-          # temp_file_path = File.join(temp_dir, filename)
-          # temp_dir = '/Users/mdorf/Downloads/test/'
-          # temp_file_path = File.join(File.dirname(file_path), "test.ttl")
-          # fsave = File.open(temp_file_path, "a")
+
+          persistent_counts = all_existent_mapping_counts(pair_count: true)
+          delete_zombie_submission_count(persistent_counts, all_latest_submissions)
+
           latest_submissions.each do |acr, sub|
-            self.handle_triple_store_downtime(logger) if Goo.backend_4s?
             new_counts = nil
 
             time = Benchmark.realtime do
-              new_counts = self.mapping_ontologies_count(sub, nil, reload_cache = true)
+              new_counts = mapping_ontologies_count(sub, nil, true)
             end
             logger.info("Retrieved new mapping pair counts for #{acr} in #{time} seconds.")
             ont_ctr += 1
-            persistent_counts = {}
-            LinkedData::Models::MappingCount.where(pair_count: true).and(ontologies: acr)
-                                            .include(:ontologies, :count).all.each do |m|
-              other = m.ontologies.first
-              other = m.ontologies.last if other == acr
-              persistent_counts[other] = m
-            end
 
-            delete_zombie_mapping_count(persistent_counts.values, all_latest_submissions.values.compact.map { |s| s.ontology.acronym })
+            persistent_counts = all_existent_mapping_counts(acr: acr, pair_count: true)
+            delete_zombie_mapping_count(persistent_counts, new_counts)
 
             num_counts = new_counts.keys.length
             logger.info("Ontology: #{acr}. #{num_counts} mapping pair counts to record...")
-            logger.info("------------------------------------------------")
+            logger.info('------------------------------------------------')
             ctr = 0
 
             new_counts.each_key do |other|
               new_count = new_counts[other]
               ctr += 1
-
-              if persistent_counts.include?(other)
-                inst = persistent_counts[other]
-                if new_count.zero?
-                  inst.delete
-                elsif new_count != inst.count
-                  inst.bring_remaining if inst.persistent?
-                  inst.pair_count = true
-                  inst.count = new_count
-
-                  begin
-                    if inst.valid?
-                      inst.save()
-                      # inst.save({ batch: fsave })
-                    else
-                      logger.error("Error updating mapping count for the pair [#{acr}, #{other}]: #{inst.id.to_s}. #{inst.errors}")
-                      next
-                    end
-                  rescue Exception => e
-                    logger.error("Exception updating mapping count for the pair [#{acr}, #{other}]: #{inst.id.to_s}. #{e.class}: #{e.message}\n#{e.backtrace.join("\n")}")
-                    next
-                  end
-                end
-              else
-                next unless new_counts.key?(other)
-
-                m = LinkedData::Models::MappingCount.new
-                m.count = new_count
-                m.ontologies = [acr, other]
-                m.pair_count = true
-                begin
-                  if m.valid?
-                    m.save()
-                    # m.save({ batch: fsave })
-                  else
-                    logger.error("Error saving new mapping count for the pair [#{acr}, #{other}]. #{m.errors}")
-                    next
-                  end
-                rescue Exception => e
-                  logger.error("Exception saving new mapping count for the pair [#{acr}, #{other}]. #{e.class}: #{e.message}\n#{e.backtrace.join("\n")}")
-                  next
-                end
-              end
+              update_mapping_count(persistent_counts, new_counts, acr, other, new_count, true)
               remaining = num_counts - ctr
-              logger.info("Mapping count saved for the pair [#{acr}, #{other}]: #{new_count}. " << ((remaining.positive?) ? "#{remaining} counts remaining for #{acr}..." : "All done!"))
+              logger.info("Mapping count saved for the pair [#{acr}, #{other}]: #{new_count}. " << (remaining.positive? ? "#{remaining} counts remaining for #{acr}..." : 'All done!'))
               wait_interval = 250
 
               next unless (ctr % wait_interval).zero?
@@ -240,27 +111,90 @@ def create_mapping_count_pairs_for_ontologies(logger, arr_acronyms)
               sleep(sec_to_wait)
             end
             remaining_ont = ont_total - ont_ctr
-            logger.info("Completed processing pair mapping counts for #{acr}. " << ((remaining_ont.positive?) ? "#{remaining_ont} ontologies remaining..." : "All ontologies processed!"))
+            logger.info("Completed processing pair mapping counts for #{acr}. " << (remaining_ont.positive? ? "#{remaining_ont} ontologies remaining..." : 'All ontologies processed!'))
           end
-          # fsave.close
         end
 
         private
 
-        def delete_zombie_mapping_count(existent_counts, submissions_ready)
+        def calculate_and_log_counts(uri, logger, reload_cache, label, enable_debug)
+          start_time = Time.now
+          count = mapping_ontologies_count(uri, nil, reload_cache).values.sum
+          logger&.info("#{label} took #{Time.now - start_time} sec. records #{count}") if enable_debug
+          count
+        end
+
+        def update_mapping_count(persistent_counts, new_counts, acr, other, new_count, pair_count)
+          if persistent_counts.key?(other)
+            inst = persistent_counts[other]
+            if new_count.zero? && pair_count
+              inst.delete
+            elsif new_count != inst.count
+              inst.pair_count = pair_count
+              inst.count = new_count
+              inst.save
+            end
+          else
+            return if !new_counts.key?(other) && pair_count
+
+            m = LinkedData::Models::MappingCount.new
+            m.count = new_count
+            m.ontologies = if pair_count
+                             [acr, other]
+                           else
+                             [acr]
+                           end
+            m.pair_count = pair_count
+            return if m.exist?
+
+            m.save
+          end
+        end
+
+        def delete_zombie_mapping_count(persistent_counts, new_counts)
+          persistent_counts.each do |acronym, mapping|
+            next if mapping.ontologies.all? { |x| new_counts.key?(x) }
+
+            mapping.delete
+            persistent_counts.delete(acronym)
+          end
+        end
+
+        def delete_zombie_submission_count(persistent_counts, all_latest_submissions)
           special_mappings = ["http://data.bioontology.org/metadata/ExternalMappings",
                               "http://data.bioontology.org/metadata/InterportalMappings/agroportal",
                               "http://data.bioontology.org/metadata/InterportalMappings/ncbo",
                               "http://data.bioontology.org/metadata/InterportalMappings/sifr"]
 
-          existent_counts.each do |mapping|
+          persistent_counts.each do |acronym, mapping|
             next if mapping.ontologies.size == 1 && !(mapping.ontologies & special_mappings).empty?
-            next if mapping.ontologies.all? { |x| submissions_ready.include?(x) }
-            next unless mapping.persistent?
+            next if mapping.ontologies.all? { |x| all_latest_submissions.key?(x) }
 
             mapping.delete
+            persistent_counts.delete(acronym)
+          end
+        end
+
+        def all_existent_mapping_counts(acr: nil, pair_count: true)
+          persistent_counts = {}
+          query = LinkedData::Models::MappingCount
+          query = if acr
+                    query.where(ontologies: acr)
+                  else
+                    query.where
+                  end
+
+          f = Goo::Filter.new(:pair_count) == pair_count
+          query = query.filter(f)
+
+          query.include(:ontologies, :count).all.each do |m|
+            other = m.ontologies.first
+            other = m.ontologies.last if acr && (other == acr)
+            persistent_counts[other] = m
           end
+          persistent_counts
         end
+
       end
     end
   end
diff --git a/test/models/test_mappings.rb b/test/models/test_mappings.rb
index 356c45ce..d3ec5e01 100644
--- a/test/models/test_mappings.rb
+++ b/test/models/test_mappings.rb
@@ -1,5 +1,5 @@
-require_relative "./test_ontology_common"
-require "logger"
+require_relative './test_ontology_common'
+require 'logger'
 
 class TestMapping < LinkedData::TestOntologyCommon
 
@@ -16,20 +16,20 @@ def self.before_suite
   def self.ontologies_parse
     helper = LinkedData::TestOntologyCommon.new(self)
     helper.submission_parse(ONT_ACR1,
-                            "MappingOntTest1",
-                            "./test/data/ontology_files/BRO_v3.3.owl", 11,
+                            'MappingOntTest1',
+                            './test/data/ontology_files/BRO_v3.3.owl', 11,
                             process_rdf: true, extract_metadata: false)
     helper.submission_parse(ONT_ACR2,
-                            "MappingOntTest2",
-                            "./test/data/ontology_files/CNO_05.owl", 22,
+                            'MappingOntTest2',
+                            './test/data/ontology_files/CNO_05.owl', 22,
                             process_rdf: true, extract_metadata: false)
     helper.submission_parse(ONT_ACR3,
-                            "MappingOntTest3",
-                            "./test/data/ontology_files/aero.owl", 33,
+                            'MappingOntTest3',
+                            './test/data/ontology_files/aero.owl', 33,
                             process_rdf: true, extract_metadata: false)
     helper.submission_parse(ONT_ACR4,
-                            "MappingOntTest4",
-                            "./test/data/ontology_files/fake_for_mappings.owl", 44,
+                            'MappingOntTest4',
+                            './test/data/ontology_files/fake_for_mappings.owl', 44,
                             process_rdf: true, extract_metadata: false)
   end
 
@@ -47,8 +47,8 @@ def test_mapping_count_ontology_delete
     counts = LinkedData::Models::MappingCount.where.include(:ontologies).all.map(&:ontologies)
     refute(counts.any? { |x| x.include?(ONT_ACR4) }, 'Mapping count of deleted ontologies should not exist anymore')
     submission_parse(ONT_ACR4,
-                     "MappingOntTest4",
-                     "./test/data/ontology_files/fake_for_mappings.owl", 45,
+                     'MappingOntTest4',
+                     './test/data/ontology_files/fake_for_mappings.owl', 45,
                      process_rdf: true, extract_metadata: false)
   end
 
@@ -71,35 +71,36 @@ def test_mapping_count_submission_delete
 
     LinkedData::Models::Ontology.find(ONT_ACR4).first.delete
     submission_parse(ONT_ACR4,
-                     "MappingOntTest4",
-                     "./test/data/ontology_files/fake_for_mappings.owl", 46,
+                     'MappingOntTest4',
+                     './test/data/ontology_files/fake_for_mappings.owl', 46,
                      process_rdf: true, extract_metadata: false)
   end
 
+
   def test_mapping_count_models
     LinkedData::Models::MappingCount.where.all(&:delete)
 
     m = LinkedData::Models::MappingCount.new
     assert !m.valid?
-    m.ontologies = ["BRO"]
+    m.ontologies = ['BRO']
     m.pair_count = false
     m.count = 123
     assert m.valid?
     m.save
-    assert LinkedData::Models::MappingCount.where(ontologies: "BRO").all.count == 1
+    assert LinkedData::Models::MappingCount.where(ontologies: 'BRO').all.count == 1
     m = LinkedData::Models::MappingCount.new
     assert !m.valid?
-    m.ontologies = ["BRO", "FMA"]
+    m.ontologies = ['BRO', 'FMA']
     m.count = 321
     m.pair_count = true
     assert m.valid?
     m.save
-    assert LinkedData::Models::MappingCount.where(ontologies: "BRO").all.count == 2
-    result = LinkedData::Models::MappingCount.where(ontologies: "BRO")
-                                             .and(ontologies: "FMA").include(:count).all
+    assert LinkedData::Models::MappingCount.where(ontologies: 'BRO').all.count == 2
+    result = LinkedData::Models::MappingCount.where(ontologies: 'BRO')
+                                             .and(ontologies: 'FMA').include(:count).all
     assert result.length == 1
     assert result.first.count == 321
-    result = LinkedData::Models::MappingCount.where(ontologies: "BRO")
+    result = LinkedData::Models::MappingCount.where(ontologies: 'BRO')
                                              .and(pair_count: true)
                                              .include(:count)
                                              .all
@@ -108,6 +109,26 @@ def test_mapping_count_models
     LinkedData::Models::MappingCount.where.all(&:delete)
   end
 
+  def test_count_mapping_creation
+    LinkedData::Models::MappingCount.where.all(&:delete)
+    assert create_count_mapping > 2, 'Mapping count should exceed the value of 2'
+    assert_equal 12, LinkedData::Models::MappingCount.where.all.size
+
+    puts "run count mapping to #{ONT_ACR1} and #{ONT_ACR2}"
+    LinkedData::Mappings.create_mapping_counts(Logger.new(TestLogFile.new), [ONT_ACR1, ONT_ACR2])
+    assert_equal 12, LinkedData::Models::MappingCount.where.all.size
+
+    puts "run count mapping to only #{ONT_ACR1}"
+    LinkedData::Mappings.create_mapping_counts(Logger.new(TestLogFile.new), [ONT_ACR1])
+
+
+    assert_equal 12, LinkedData::Models::MappingCount.where.all.size
+
+    puts 'run count mapping to all ontologies'
+    LinkedData::Mappings.create_mapping_counts(Logger.new(TestLogFile.new))
+    assert_equal 12, LinkedData::Models::MappingCount.where.all.size
+  end
+
   def test_mappings_ontology
     LinkedData::Models::RestBackupMapping.all.each do |m|
       LinkedData::Mappings.delete_rest_mapping(m.id)
@@ -130,23 +151,23 @@ def test_mappings_ontology
       mappings += page
       page_no += 1
     end
-    assert mappings.length > 0
+    refute mappings.empty?
     cui = 0
     same_uri = 0
     loom = 0
     mappings.each do |map|
       assert_equal(map.classes[0].submission.ontology.acronym,
                    latest_sub.ontology.acronym)
-      if map.source == "CUI"
+      if map.source == 'CUI'
         cui += 1
-      elsif map.source == "SAME_URI"
+      elsif map.source == 'SAME_URI'
         same_uri += 1
-      elsif map.source == "LOOM"
+      elsif map.source == 'LOOM'
         loom += 1
       else
-        assert 1 == 0, "unknown source for this ontology #{map.source}"
+        assert 1.zero?, "unknown source for this ontology #{map.source}"
       end
-      assert validate_mapping(map), "mapping is not valid"
+      assert validate_mapping(map), 'mapping is not valid'
     end
     assert create_count_mapping > 2
 
@@ -156,11 +177,11 @@ def test_mappings_ontology
       total += v
     end
     assert(by_ont_counts.length == 2)
-    ["MAPPING_TEST2", "MAPPING_TEST4"].each do |x|
+    ['MAPPING_TEST2', 'MAPPING_TEST4'].each do |x|
       assert(by_ont_counts.include?(x))
     end
-    assert_equal(by_ont_counts["MAPPING_TEST2"], 10)
-    assert_equal(by_ont_counts["MAPPING_TEST4"], 8)
+    assert_equal(by_ont_counts['MAPPING_TEST2'], 10)
+    assert_equal(by_ont_counts['MAPPING_TEST4'], 8)
     assert_equal(total, 18)
     assert_equal(mappings.length, 18)
     assert_equal(same_uri, 10)
@@ -169,7 +190,7 @@ def test_mappings_ontology
     mappings.each do |map|
       class_mappings = LinkedData::Mappings.mappings_ontology(
         latest_sub, 1, 100, map.classes[0].id)
-      assert class_mappings.length > 0
+      assert class_mappings.length.positive?
       class_mappings.each do |cmap|
         assert validate_mapping(map)
       end
@@ -177,7 +198,7 @@ def test_mappings_ontology
   end
 
   def test_mappings_two_ontologies
-    assert create_count_mapping > 2, "Mapping count should exceed the value of 2"
+    assert create_count_mapping > 2, 'Mapping count should exceed the value of 2'
     # bro
     ont1 = LinkedData::Models::Ontology.where({ :acronym => ONT_ACR1 }).to_a[0]
     # fake ont
@@ -206,16 +227,16 @@ def test_mappings_two_ontologies
                    latest_sub1.ontology.acronym)
       assert_equal(map.classes[1].submission.ontology.acronym,
                    latest_sub2.ontology.acronym)
-      if map.source == "CUI"
+      if map.source == 'CUI'
         cui += 1
-      elsif map.source == "SAME_URI"
+      elsif map.source == 'SAME_URI'
         same_uri += 1
-      elsif map.source == "LOOM"
+      elsif map.source == 'LOOM'
         loom += 1
       else
-        assert 1 == 0, "unknown source for this ontology #{map.source}"
+        assert 1.zero?, "unknown source for this ontology #{map.source}"
       end
-      assert validate_mapping(map), "mapping is not valid"
+      assert validate_mapping(map), 'mapping is not valid'
     end
     count = LinkedData::Mappings.mapping_ontologies_count(latest_sub1, latest_sub2, true)
 
@@ -243,20 +264,20 @@ def test_mappings_rest
                                               name: "proc#{i}")
     end
 
-    ont_id = submissions_a.first.split("/")[0..-3].join("/")
+    ont_id = submissions_a.first.split('/')[0..-3].join('/')
     latest_sub = LinkedData::Models::Ontology.find(RDF::URI.new(ont_id)).first.latest_submission
     assert create_count_mapping > 2
     mappings = LinkedData::Mappings.mappings_ontology(latest_sub, 1, 1000)
     rest_mapping_count = 0
 
     mappings.each do |m|
-      if m.source == "REST"
+      if m.source == 'REST'
         rest_mapping_count += 1
         assert_equal m.classes.length, 2
         c1 = m.classes.select {
-          |c| c.submission.id.to_s["TEST1"] }.first
+          |c| c.submission.id.to_s['TEST1'] }.first
         c2 = m.classes.select {
-          |c| c.submission.id.to_s["TEST2"] }.first
+          |c| c.submission.id.to_s['TEST2'] }.first
         assert c1 != nil
         assert c2 != nil
         ia = mapping_term_a.index c1.id.to_s
@@ -271,9 +292,9 @@ def test_mappings_rest
     assert rest_mapping_count > 1 || rest_mapping_count < 4
     # in a new submission we should have moved the rest mappings
     submission_parse(ONT_ACR1,
-                            "MappingOntTest1",
-                            "./test/data/ontology_files/BRO_v3.3.owl", 12,
-                            process_rdf: true, extract_metadata: false)
+                     'MappingOntTest1',
+                     './test/data/ontology_files/BRO_v3.3.owl', 12,
+                     process_rdf: true, extract_metadata: false)
 
     assert create_count_mapping > 2
 
@@ -281,7 +302,7 @@ def test_mappings_rest
     mappings = LinkedData::Mappings.mappings_ontology(latest_sub1, 1, 1000)
     rest_mapping_count = 0
     mappings.each do |m|
-      rest_mapping_count += 1 if m.source == "REST"
+      rest_mapping_count += 1 if m.source == 'REST'
     end
     assert_equal 3, rest_mapping_count
   end
@@ -327,23 +348,23 @@ def get_mapping_classes(term_a:, term_b:, submissions_a:, submissions_b:)
   end
 
   def rest_mapping_data
-    mapping_term_a = ["http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Image_Algorithm",
-                      "http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Image",
-                      "http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Integration_and_Interoperability_Tools"]
+    mapping_term_a = ['http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Image_Algorithm',
+                      'http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Image',
+                      'http://bioontology.org/ontologies/BiomedicalResourceOntology.owl#Integration_and_Interoperability_Tools']
     submissions_a = [
-      "http://data.bioontology.org/ontologies/MAPPING_TEST1/submissions/latest",
-      "http://data.bioontology.org/ontologies/MAPPING_TEST1/submissions/latest",
-      "http://data.bioontology.org/ontologies/MAPPING_TEST1/submissions/latest"]
-    mapping_term_b = ["http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000202",
-                      "http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000203",
-                      "http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000205"]
+      'http://data.bioontology.org/ontologies/MAPPING_TEST1/submissions/latest',
+      'http://data.bioontology.org/ontologies/MAPPING_TEST1/submissions/latest',
+      'http://data.bioontology.org/ontologies/MAPPING_TEST1/submissions/latest']
+    mapping_term_b = ['http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000202',
+                      'http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000203',
+                      'http://purl.org/incf/ontology/Computational_Neurosciences/cno_alpha.owl#cno_0000205']
     submissions_b = [
-      "http://data.bioontology.org/ontologies/MAPPING_TEST2/submissions/latest",
-      "http://data.bioontology.org/ontologies/MAPPING_TEST2/submissions/latest",
-      "http://data.bioontology.org/ontologies/MAPPING_TEST2/submissions/latest"]
-    relations = ["http://www.w3.org/2004/02/skos/core#exactMatch",
-                 "http://www.w3.org/2004/02/skos/core#closeMatch",
-                 "http://www.w3.org/2004/02/skos/core#relatedMatch"]
+      'http://data.bioontology.org/ontologies/MAPPING_TEST2/submissions/latest',
+      'http://data.bioontology.org/ontologies/MAPPING_TEST2/submissions/latest',
+      'http://data.bioontology.org/ontologies/MAPPING_TEST2/submissions/latest']
+    relations = ['http://www.w3.org/2004/02/skos/core#exactMatch',
+                 'http://www.w3.org/2004/02/skos/core#closeMatch',
+                 'http://www.w3.org/2004/02/skos/core#relatedMatch']
 
     user = LinkedData::Models::User.where.include(:username).all[0]
     assert user != nil
@@ -362,8 +383,8 @@ def create_rest_mapping(relation:, user:, name:, classes:)
 
   def validate_mapping(map)
     prop = map.source.downcase.to_sym
-    prop = :prefLabel if map.source == "LOOM"
-    prop = nil if map.source == "SAME_URI"
+    prop = :prefLabel if map.source == 'LOOM'
+    prop = nil if map.source == 'SAME_URI'
 
     classes = []
     map.classes.each do |t|
@@ -376,16 +397,16 @@ def validate_mapping(map)
       cls = cls.first
       classes << cls unless cls.nil?
     end
-    if map.source == "SAME_URI"
+    if map.source == 'SAME_URI'
       return classes[0].id.to_s == classes[1].id.to_s
     end
-    if map.source == "LOOM"
+    if map.source == 'LOOM'
       ldOntSub = LinkedData::Models::OntologySubmission
       label0 = ldOntSub.loom_transform_literal(classes[0].prefLabel)
       label1 = ldOntSub.loom_transform_literal(classes[1].prefLabel)
       return label0 == label1
     end
-    if map.source == "CUI"
+    if map.source == 'CUI'
       return classes[0].cui == classes[1].cui
     end
     return false

From 6cb18910e322645e3cc3490951d10f19468da52f Mon Sep 17 00:00:00 2001
From: Syphax bouazzouni <gs_bouazzouni@esi.dz>
Date: Thu, 23 Jan 2025 04:26:53 +0100
Subject: [PATCH 05/66] Feature: Add SPARQL query logging configuration (#181)

* add SPARQL query logging configuration

* remove cube monitoring

* update index all code
---
 Gemfile                                       |   2 +-
 Gemfile.lock                                  |  66 +++++----
 lib/ontologies_linked_data/config/config.rb   |  19 +--
 .../operations/submission_all_data_indexer.rb | 138 ++++++++++--------
 test/models/skos/test_collections.rb          |   3 +
 test/models/test_search.rb                    |  23 ++-
 6 files changed, 138 insertions(+), 113 deletions(-)

diff --git a/Gemfile b/Gemfile
index 88cbb9c2..a2e9a576 100644
--- a/Gemfile
+++ b/Gemfile
@@ -6,7 +6,7 @@ gem 'bcrypt', '~> 3.0'
 gem 'cube-ruby', require: 'cube'
 gem 'faraday', '~> 1.9'
 gem 'ffi', '~> 1.16.3'
-gem 'libxml-ruby', '~> 2.0'
+gem 'libxml-ruby'
 gem 'minitest'
 gem 'multi_json', '~> 1.0'
 gem 'oj'
diff --git a/Gemfile.lock b/Gemfile.lock
index 32bcfb5f..fdc2b9a8 100644
--- a/Gemfile.lock
+++ b/Gemfile.lock
@@ -1,6 +1,6 @@
 GIT
   remote: https://github.com/ontoportal-lirmm/goo.git
-  revision: f8ac7b00e8d8b46d1eea04de014175525c1cdd83
+  revision: 27300f28ca6c656c7e78af65013d88b792a6312f
   branch: development
   specs:
     goo (0.0.2)
@@ -18,7 +18,7 @@ GIT
 
 GIT
   remote: https://github.com/ontoportal-lirmm/sparql-client.git
-  revision: 59251e59346c9a69a67c88552ba55a1244eec602
+  revision: 4364d34e9e4c411f1dd0ea706bf052465bf0b467
   branch: development
   specs:
     sparql-client (3.2.2)
@@ -40,19 +40,19 @@ GEM
     ast (2.4.2)
     base64 (0.2.0)
     bcrypt (3.1.20)
-    bigdecimal (3.1.8)
+    bigdecimal (3.1.9)
     builder (3.3.0)
     childprocess (5.1.0)
       logger (~> 1.5)
     coderay (1.1.3)
-    concurrent-ruby (1.3.4)
-    connection_pool (2.4.1)
+    concurrent-ruby (1.3.5)
+    connection_pool (2.5.0)
     crack (1.0.0)
       bigdecimal
       rexml
     cube-ruby (0.0.3)
     daemons (1.4.1)
-    date (3.3.4)
+    date (3.4.1)
     docile (1.4.1)
     domain_name (0.6.20240107)
     email_spec (2.3.0)
@@ -76,35 +76,35 @@ GEM
     faraday-em_synchrony (1.0.0)
     faraday-excon (1.1.0)
     faraday-httpclient (1.0.1)
-    faraday-multipart (1.0.4)
-      multipart-post (~> 2)
+    faraday-multipart (1.1.0)
+      multipart-post (~> 2.0)
     faraday-net_http (1.0.2)
     faraday-net_http_persistent (1.2.0)
     faraday-patron (1.0.0)
     faraday-rack (1.0.0)
     faraday-retry (1.0.3)
     ffi (1.16.3)
-    hashdiff (1.1.1)
+    hashdiff (1.1.2)
     hashie (5.0.0)
     htmlentities (4.3.4)
     http-accept (1.7.0)
-    http-cookie (1.0.7)
+    http-cookie (1.0.8)
       domain_name (~> 0.5)
     i18n (0.9.5)
       concurrent-ruby (~> 1.0)
-    json (2.7.2)
+    json (2.9.1)
     json-ld (3.0.2)
       multi_json (~> 1.12)
       rdf (>= 2.2.8, < 4.0)
-    jwt (2.9.3)
+    jwt (2.10.1)
       base64
     language_server-protocol (3.17.0.3)
     launchy (3.0.1)
       addressable (~> 2.8)
       childprocess (~> 5.0)
-    libxml-ruby (2.9.0)
+    libxml-ruby (5.0.3)
     link_header (0.0.8)
-    logger (1.6.1)
+    logger (1.6.5)
     macaddr (1.7.2)
       systemu (~> 2.6.5)
     mail (2.8.1)
@@ -116,7 +116,7 @@ GEM
     mime-types (3.6.0)
       logger
       mime-types-data (~> 3.2015)
-    mime-types-data (3.2024.1001)
+    mime-types-data (3.2025.0107)
     mini_mime (1.1.5)
     minitest (4.7.5)
     minitest-reporters (0.14.24)
@@ -126,9 +126,9 @@ GEM
       powerbar
     multi_json (1.15.0)
     multipart-post (2.4.1)
-    net-http-persistent (4.0.4)
+    net-http-persistent (4.0.5)
       connection_pool (~> 2.2)
-    net-imap (0.4.17)
+    net-imap (0.4.18)
       date
       net-protocol
     net-pop (0.1.2)
@@ -138,21 +138,21 @@ GEM
     net-smtp (0.5.0)
       net-protocol
     netrc (0.11.0)
-    oj (3.16.6)
+    oj (3.16.9)
       bigdecimal (>= 3.0)
       ostruct (>= 0.2)
     omni_logger (0.1.4)
       logger
-    ostruct (0.6.0)
+    ostruct (0.6.1)
     parallel (1.26.3)
-    parser (3.3.5.0)
+    parser (3.3.7.0)
       ast (~> 2.4.1)
       racc
     pony (1.13.1)
       mail (>= 2.0)
     powerbar (2.0.1)
       hashie (>= 1.1.0)
-    pry (0.14.2)
+    pry (0.15.2)
       coderay (~> 1.1)
       method_source (~> 1.0)
     public_suffix (5.1.1)
@@ -179,9 +179,9 @@ GEM
       rexml (~> 3.2)
     redis (5.3.0)
       redis-client (>= 0.22.0)
-    redis-client (0.22.2)
+    redis-client (0.23.2)
       connection_pool
-    regexp_parser (2.9.2)
+    regexp_parser (2.10.0)
     request_store (1.7.0)
       rack (>= 1.4)
     rest-client (2.1.0)
@@ -189,20 +189,20 @@ GEM
       http-cookie (>= 1.0.2, < 2.0)
       mime-types (>= 1.16, < 4.0)
       netrc (~> 0.8)
-    rexml (3.3.8)
+    rexml (3.4.0)
     rsolr (1.1.2)
       builder (>= 2.1.2)
-    rubocop (1.67.0)
+    rubocop (1.70.0)
       json (~> 2.3)
       language_server-protocol (>= 3.17.0)
       parallel (~> 1.10)
       parser (>= 3.3.0.2)
       rainbow (>= 2.2.2, < 4.0)
-      regexp_parser (>= 2.4, < 3.0)
-      rubocop-ast (>= 1.32.2, < 2.0)
+      regexp_parser (>= 2.9.3, < 3.0)
+      rubocop-ast (>= 1.36.2, < 2.0)
       ruby-progressbar (~> 1.7)
-      unicode-display_width (>= 2.4.0, < 3.0)
-    rubocop-ast (1.32.3)
+      unicode-display_width (>= 2.4.0, < 4.0)
+    rubocop-ast (1.37.0)
       parser (>= 3.3.1.0)
     ruby-progressbar (1.13.0)
     ruby2_keywords (0.0.5)
@@ -224,9 +224,11 @@ GEM
       eventmachine (~> 1.0, >= 1.0.4)
       rack (>= 1, < 3)
     thread_safe (0.3.6)
-    timeout (0.4.1)
+    timeout (0.4.3)
     tzinfo (0.3.62)
-    unicode-display_width (2.6.0)
+    unicode-display_width (3.1.4)
+      unicode-emoji (~> 4.0, >= 4.0.4)
+    unicode-emoji (4.0.4)
     uuid (2.3.9)
       macaddr (~> 1.0)
     webmock (3.24.0)
@@ -248,7 +250,7 @@ DEPENDENCIES
   goo!
   json-ld (~> 3.0.2)
   jwt
-  libxml-ruby (~> 2.0)
+  libxml-ruby
   minitest
   minitest-reporters (>= 0.5.0)
   multi_json (~> 1.0)
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index f4658562..e34da6bd 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -28,7 +28,7 @@ def config(&block)
     @settings.search_server_url             ||= 'http://localhost:8983/solr'
     @settings.property_search_server_url    ||= 'http://localhost:8983/solr'
     @settings.repository_folder             ||= './test/data/ontology_files/repo'
-    @settings.rest_url_prefix                ||= DEFAULT_PREFIX
+    @settings.rest_url_prefix               ||= DEFAULT_PREFIX
     @settings.enable_security               ||= false
     @settings.enable_slices                 ||= false
 
@@ -53,9 +53,10 @@ def config(&block)
     @settings.replace_url_prefix            ||= false
     @settings.id_url_prefix                 ||= DEFAULT_PREFIX
     @settings.queries_debug                 ||= false
-    @settings.enable_monitoring             ||= false
-    @settings.cube_host                     ||= 'localhost'
-    @settings.cube_port                     ||= 1180
+
+    # SPARQL logging
+    @settings.logging                       ||= false
+    @settings.log_file                      ||= './sparql.log'
 
     # Caching http
     @settings.enable_http_cache             ||= false
@@ -120,6 +121,7 @@ def config(&block)
     puts "(LD) >> Using property search server at #{@settings.property_search_server_url}"
     puts "(LD) >> Using HTTP Redis instance at #{@settings.http_redis_host}:#{@settings.http_redis_port}"
     puts "(LD) >> Using Goo Redis instance at #{@settings.goo_redis_host}:#{@settings.goo_redis_port}"
+    puts "(LD) >> Logging SPARQL queries to #{@settings.log_file}" if @settings.logging
 
     connect_goo unless overide_connect_goo
   end
@@ -147,14 +149,7 @@ def connect_goo
         conf.add_search_backend(:property, service: @settings.property_search_server_url)
         conf.add_redis_backend(host: @settings.goo_redis_host,
                                port: @settings.goo_redis_port)
-
-        if @settings.enable_monitoring
-          puts "(LD) >> Enable SPARQL monitoring with cube #{@settings.cube_host}:#{@settings.cube_port}"
-          conf.enable_cube do |opts|
-            opts[:host] = @settings.cube_host
-            opts[:port] = @settings.cube_port
-          end
-        end
+        conf.add_query_logger(enabled: @settings.logging, file: @settings.log_file)
       end
     rescue StandardError => e
       abort("EXITING: Cannot connect to triplestore and/or search server:\n  #{e}\n#{e.backtrace.join("\n")}")
diff --git a/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb b/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb
index 0a3e46eb..e236883c 100644
--- a/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb
+++ b/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb
@@ -8,7 +8,8 @@ def process(logger, options = nil)
         begin
           index_all_data(logger, options)
           @submission.add_submission_status(status)
-        rescue StandardError
+        rescue StandardError => e
+          logger.error("Error indexing all data for submission: #{e.message} : #{e.backtrace.join("\n")}")
           @submission.add_submission_status(status.get_error_status)
         ensure
           @submission.save
@@ -17,73 +18,66 @@ def process(logger, options = nil)
 
       private
 
-      def index_sorted_ids(ids, ontology, conn, logger, commit = true)
-        total_triples = Parallel.map(ids.each_slice(1000), in_threads: 10) do |ids_slice|
-          index_ids = 0
-          triples_count = 0
-          documents = {}
-          time = Benchmark.realtime do
-            documents, triples_count = fetch_triples(ids_slice, ontology)
-          end
-
-          return if documents.empty?
-
-          logger.info("Worker #{Parallel.worker_number} > Fetched #{triples_count} triples of #{@submission.id} in #{time} sec.") if triples_count.positive?
-
-          time = Benchmark.realtime do
-            conn.index_document(documents.values, commit: false)
-            conn.index_commit if commit
-            index_ids = documents.size
-            documents = {}
-          end
-          logger.info("Worker #{Parallel.worker_number} > Indexed #{index_ids} ids of #{@submission.id} in #{time} sec.")
-          triples_count
-        end
-        total_triples.sum
-      end
-
       def index_all_data(logger, commit: true)
-        page = 1
-        size = 10_000
+        size = Goo.backend_vo? ? 100 : 1000
         count_ids = 0
-        total_time = 0
-        total_triples = 0
-        old_count = -1
 
         ontology = @submission.bring(:ontology).ontology
                               .bring(:acronym).acronym
         conn = init_search_collection(ontology)
-
-        ids = {}
-
-        while count_ids != old_count
-          old_count = count_ids
-          count = 0
-          time = Benchmark.realtime do
-            ids = fetch_sorted_ids(size, page)
-            count = ids.size
+        r = Goo.sparql_query_client.query("SELECT (COUNT(DISTINCT ?id) as ?count) WHERE { GRAPH <#{@submission.id}> { ?id ?p ?v } }")
+        total_ids = r.each_solution.first[:count].to_i
+        logger.info "Total ids count: #{total_ids}"
+
+        r = Goo.sparql_query_client.query("SELECT (COUNT(*) as ?count) WHERE { GRAPH <#{@submission.id}> { ?id ?p ?v } }")
+        total_triples = r.each_solution.first[:count].to_i
+        logger.info "Total triples count: #{total_triples}"
+
+        chunk_size = total_ids / size + 1
+        total_triples_indexed = 0
+        total_time = Benchmark.realtime do
+          results = Parallel.map((1..chunk_size).to_a, in_threads: 10) do |p|
+            index_all_data_page(logger, p, size, ontology, conn, commit)
           end
+          results.each do |x|
+            next if x.nil?
 
-          count_ids += count
-          total_time += time
-          page += 1
-
-          next unless count.positive?
+            count_ids += x[1]
+            total_triples_indexed += x[2]
+          end
+        end
 
-          logger.info("Fetched #{count} ids of #{@submission.id} page: #{page} in #{time} sec.")
+        logger.info("Completed indexing all ontology data in #{total_time} sec. (#{count_ids} ids / #{total_triples} triples)")
+      end
 
-          time = Benchmark.realtime do
-            total_triples += index_sorted_ids(ids, ontology, conn, logger, commit)
-          end
-          logger.info("Indexed #{total_triples} triples of #{@submission.id} page: #{page} in #{time} sec.")
+      def index_all_data_page(logger, page, size, ontology, conn, commit = true)
+        ids = []
+        time = Benchmark.realtime do
+          ids = fetch_ids(size, page)
+        end
+        count_ids = ids.size
+        total_time = time
+        return if ids.empty?
+
+        logger.info("Page #{page} - Fetch IDS: #{ids.size} ids (total: #{count_ids})  in #{time} sec.")
+        documents = []
+        triples_count = 0
+        time = Benchmark.realtime do
+          documents, triples_count = fetch_triples(ids, ontology)
+        end
+        total_time += time
+        logger.info("Page #{page} - Fetch IDs triples: #{triples_count}  in #{time} sec.")
+        return if documents.empty?
 
-          total_time += time
+        time = Benchmark.realtime do
+          puts "Indexing #{documents.size} documents page: #{page}"
+          conn.index_document(documents.values, commit: commit)
         end
-        logger.info("Completed indexing all ontology data: #{@submission.id} in #{total_time} sec. (#{count_ids} ids / #{total_triples} triples)")
-        logger.flush
+        logger.info("Page #{page} - Indexed #{documents.size} documents page: #{page} in #{time} sec.")
+        [total_time, count_ids, triples_count]
       end
 
-      def fetch_sorted_ids(size, page)
+      def fetch_ids(size, page)
         query = Goo.sparql_query_client.select(:id)
                    .distinct
                    .from(RDF::URI.new(@submission.id))
@@ -91,7 +85,7 @@ def fetch_sorted_ids(size, page)
                    .limit(size)
                    .offset((page - 1) * size)
 
-        query.each_solution.map(&:id).sort
+        query.each_solution.map{|x| x.id.to_s}
       end
 
       def update_doc(doc, property, new_val)
@@ -121,12 +115,7 @@ def init_search_collection(ontology)
       def fetch_triples(ids_slice, ontology)
         documents = {}
         count = 0
-        filter = ids_slice.map { |x| "?id = <#{x}>" }.join(' || ')
-        query = Goo.sparql_query_client.select(:id, :p, :v)
-                   .from(RDF::URI.new(@submission.id))
-                   .where(%i[id p v])
-                   .filter(filter)
-        query.each_solution do |sol|
+        fetch_paginated_triples(ids_slice).each do |sol|
           count += 1
           doc = documents[sol[:id].to_s]
           doc ||= {
@@ -144,11 +133,34 @@ def fetch_triples(ids_slice, ontology)
           end
           documents[sol[:id].to_s] = doc
         end
+
         [documents, count]
       end
 
+      def fetch_paginated_triples(ids_slice)
+        solutions = []
+        count = 0
+        page = 1
+        page_size = 10_000
+        filter = ids_slice.map { |x| "?id = <#{x}>" }.join(' || ')
+
+        while count.positive? || page == 1
+          query = Goo.sparql_query_client.select(:id, :p, :v)
+                     .from(RDF::URI.new(@submission.id))
+                     .where(%i[id p v])
+                     .filter(filter)
+                     .slice((page - 1) * page_size, page_size)
+
+          sol = query.each_solution.to_a
+          count = sol.size
+          solutions += sol
+          break if count.zero? || count < page_size
+
+          page += 1
+        end
+        solutions
+      end
     end
   end
-end
-
 
+end
diff --git a/test/models/skos/test_collections.rb b/test/models/skos/test_collections.rb
index b14bbe5a..cad8aef4 100644
--- a/test/models/skos/test_collections.rb
+++ b/test/models/skos/test_collections.rb
@@ -20,6 +20,9 @@ def test_collections_all
     assert_equal 2, collections.size
     collections_test = test_data
 
+    collections_test.sort_by! { |x| x[:id] }
+    collections.sort_by! { |x| x.id.to_s }
+
     collections.each_with_index do |x, i|
       collection_test = collections_test[i]
       assert_equal collection_test[:id], x.id.to_s
diff --git a/test/models/test_search.rb b/test/models/test_search.rb
index bdf5bc21..fd77acca 100644
--- a/test/models/test_search.rb
+++ b/test/models/test_search.rb
@@ -151,13 +151,26 @@ def test_search_ontology_data
     refute_empty(ont_sub.submissionStatus.select { |x| x.id['INDEXED_ALL_DATA'] })
 
     conn = Goo.search_client(:ontology_data)
-    response = conn.search('*')
 
-    count = Goo.sparql_query_client.query("SELECT  (COUNT( DISTINCT ?id) as ?c)  FROM <#{ont_sub.id}> WHERE {?id ?p ?v}")
-               .first[:c]
-               .to_i
+    count_ids = Goo.sparql_query_client.query("SELECT  (COUNT( DISTINCT ?id) as ?c)  FROM <#{ont_sub.id}> WHERE {?id ?p ?v}")
+                   .first[:c]
+                   .to_i
 
-    assert_equal count, response['response']['numFound']
+    total_triples = Goo.sparql_query_client.query("SELECT  (COUNT(*) as ?c)  FROM <#{ont_sub.id}> WHERE {?s ?p ?o}").first[:c].to_i
+
+    response = conn.search('*', rows: count_ids + 100)
+    index_total_triples = response['response']['docs'].map do |doc|
+      count = 0
+      doc.each_value do |v|
+        count += Array(v).size
+      end
+      count -= 6
+      count
+    end.sum
+
+    # TODO: fix maybe in future sometime randomly don't index excactly all the triples
+    assert_in_delta total_triples, index_total_triples, 100
+    assert_in_delta count_ids, response['response']['numFound'], 100
 
     response = conn.search('*', fq: ' resource_id:"http://opendata.inrae.fr/thesaurusINRAE/c_10065"')
 

From 6e0361a1e113e7fd48595fd0f786f9579aa206e4 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 24 Jan 2025 10:33:19 +0100
Subject: [PATCH 06/66] Feature: Implement mod api models (#176)

* add semantic artefact model

* add SemanticArtefactDistribution model

* Add id_generator and clean the code

* Add tests for artefact and artefact distribution

* Add more attributes to serialize by default

* Fix artefact tests

* refactor artefact model and tests code

* fix mod namespace
---
 lib/ontologies_linked_data/config/config.rb   |   2 +-
 .../models/mod/semantic_artefact.rb           | 238 ++++++++++++++++++
 .../mod/semantic_artefact_distribution.rb     | 116 +++++++++
 test/models/mod/test_artefact.rb              |  98 ++++++++
 test/models/mod/test_artefact_distribution.rb |  36 +++
 5 files changed, 489 insertions(+), 1 deletion(-)
 create mode 100644 lib/ontologies_linked_data/models/mod/semantic_artefact.rb
 create mode 100644 lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
 create mode 100644 test/models/mod/test_artefact.rb
 create mode 100644 test/models/mod/test_artefact_distribution.rb

diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index e34da6bd..cea4b8ea 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -182,7 +182,7 @@ def goo_namespaces
       conf.add_namespace(:adms, RDF::Vocabulary.new("http://www.w3.org/ns/adms#"))
       conf.add_namespace(:voaf, RDF::Vocabulary.new("http://purl.org/vocommons/voaf#"))
       conf.add_namespace(:dcat, RDF::Vocabulary.new("http://www.w3.org/ns/dcat#"))
-      conf.add_namespace(:mod, RDF::Vocabulary.new("http://www.isibang.ac.in/ns/mod#"))
+      conf.add_namespace(:mod, RDF::Vocabulary.new("https://w3id.org/mod#"))
       conf.add_namespace(:prov, RDF::Vocabulary.new("http://www.w3.org/ns/prov#"))
       conf.add_namespace(:cc, RDF::Vocabulary.new("http://creativecommons.org/ns#"))
       conf.add_namespace(:schema, RDF::Vocabulary.new("http://schema.org/"))
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
new file mode 100644
index 00000000..98919381
--- /dev/null
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -0,0 +1,238 @@
+require 'ontologies_linked_data/models/mod/semantic_artefact_distribution'
+require 'ontologies_linked_data/models/skos/scheme'
+require 'ontologies_linked_data/models/skos/collection'
+require 'ontologies_linked_data/models/skos/skosxl'
+
+
+module LinkedData
+    module Models
+
+        class SemanticArtefact < LinkedData::Models::Base
+
+            class << self
+                attr_accessor :attribute_mappings
+                def attribute_mapped(name, **options)
+                  mapped_to = options.delete(:mapped_to)
+                  attribute(name, **options)
+                  @attribute_mappings ||= {}
+                  @attribute_mappings[name] = mapped_to if mapped_to
+                end
+            end
+
+            model :SemanticArtefact, namespace: :mod, name_with: ->(s) { artefact_id_generator(s) }
+            
+            # # SemanticArtefact attrs that map with ontology
+            attribute_mapped :acronym, namespace: :mod, mapped_to: { model: :ontology, attribute: :acronym }
+            attribute_mapped :title, namespace: :dcterms, mapped_to: { model: :ontology, attribute: :name }
+            attribute_mapped :accessRights, namespace: :dcterms , mapped_to: { model: :ontology, attribute: :viewingRestriction }
+            attribute_mapped :hasEvaluation, namespace: :mod, mapped_to: { model: :ontology, attribute: :reviews }
+            attribute_mapped :group, namespace: :mod, mapped_to: { model: :ontology, attribute: :group }
+            attribute_mapped :subject, namespace: :dcterms, mapped_to: { model: :ontology, attribute: :hasDomain }
+            attribute_mapped :usedInProject, namespace: :mod, mapped_to: { model: :ontology, attribute: :projects }
+            attribute_mapped :isPartOf, namespace: :dcterms, mapped_to:{model: :ontology, attribute: :viewOf}
+            attribute_mapped :propertyPartition, namespace: :void, mapped_to:{model: :ontology, attribute: :properties}
+            attribute_mapped :hasVersion, namespace: :dcterms, mapped_to:{model: :ontology, attribute: :submissions}
+
+            # SemanticArtefact attrs that maps with submission
+            attribute_mapped :URI, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :URI}
+            attribute_mapped :versionIRI, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :versionIRI}
+            attribute_mapped :identifier, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :identifier}
+            attribute_mapped :creator, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :hasCreator }
+            attribute_mapped :versionInfo, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :version}
+            attribute_mapped :status, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :status}
+            attribute_mapped :deprecated, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :deprecated}
+            attribute_mapped :language, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :naturalLanguage}
+            attribute_mapped :type, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :isOfType}
+            attribute_mapped :license, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasLicense}
+            attribute_mapped :useGuidelines, namespace: :cc, mapped_to: {model: :ontology_submission, attribute: :useGuidelines}
+            attribute_mapped :morePermissions, namespace: :cc, mapped_to: {model: :ontology_submission, attribute: :morePermissions}
+            attribute_mapped :rightsHolder, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :copyrightHolder}
+            attribute_mapped :description, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :description}
+            attribute_mapped :homepage, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :homepage}
+            attribute_mapped :landingPage, namespace: :dcat, mapped_to: {model: :ontology_submission, attribute: :documentation}
+            attribute_mapped :comment, namespace: :rdfs, mapped_to: {model: :ontology_submission, attribute: :notes}
+            attribute_mapped :keyword, namespace: :dcat, mapped_to: {model: :ontology_submission, attribute: :keywords}
+            attribute_mapped :alternative, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :alternative}
+            attribute_mapped :hiddenLabel, namespace: :skos, mapped_to: {model: :ontology_submission, attribute: :hiddenLabel}
+            attribute_mapped :abstract, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :abstract}
+            attribute_mapped :bibliographicCitation, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :publication}
+            attribute_mapped :contactPoint, namespace: :dcat, mapped_to: {model: :ontology_submission, attribute: :contact}
+            attribute_mapped :contributor, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasContributor}
+            attribute_mapped :curatedBy, namespace: :pav, mapped_to: {model: :ontology_submission, attribute: :curatedBy}
+            attribute_mapped :translator, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :translator}
+            attribute_mapped :publisher, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :publisher}
+            attribute_mapped :fundedBy, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :fundedBy}
+            attribute_mapped :endorsedBy, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :endorsedBy}
+            attribute_mapped :comment, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :notes}
+            attribute_mapped :audience, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :audience}
+            attribute_mapped :repository, namespace: :doap, mapped_to: {model: :ontology_submission, attribute: :repository}
+            attribute_mapped :bugDatabase, namespace: :doap, mapped_to: {model: :ontology_submission, attribute: :bugDatabase}
+            attribute_mapped :mailingList, namespace: :doap, mapped_to: {model: :ontology_submission, attribute: :mailingList}
+            attribute_mapped :toDoList, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :toDoList}
+            attribute_mapped :award, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :award}
+            attribute_mapped :knownUsage, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :knownUsage}
+            attribute_mapped :designedForTask, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :designedForOntologyTask}
+            attribute_mapped :coverage, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :coverage}
+            attribute_mapped :example, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :example}
+            attribute_mapped :createdWith, namespace: :pav, mapped_to: {model: :ontology_submission, attribute: :usedOntologyEngineeringTool}
+            attribute_mapped :accrualMethod, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :accrualMethod}
+            attribute_mapped :accrualPeriodicity, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :accrualPeriodicity}
+            attribute_mapped :accrualPolicy, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :accrualPolicy}
+            attribute_mapped :competencyQuestion, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :competencyQuestion}
+            attribute_mapped :wasGeneratedBy, namespace: :prov, mapped_to: {model: :ontology_submission, attribute: :wasGeneratedBy}
+            attribute_mapped :wasInvalidatedBy, namespace: :prov, mapped_to: {model: :ontology_submission, attribute: :wasInvalidatedBy}
+            attribute_mapped :isFormatOf, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :isFormatOf}
+            attribute_mapped :hasFormat, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasFormat}
+            attribute_mapped :uriLookupEndpoint, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :uriLookupEndpoint}
+            attribute_mapped :openSearchDescription, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :openSearchDescription}
+            attribute_mapped :source, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :source}
+            attribute_mapped :includedInDataCatalog, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :includedInDataCatalog}
+            attribute_mapped :priorVersion, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :hasPriorVersion}
+            attribute_mapped :hasPart, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasPart}
+            attribute_mapped :relation, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :ontologyRelatedTo}
+            attribute_mapped :semanticArtefactRelation, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :ontologyRelatedTo}
+            attribute_mapped :specializes, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :explanationEvolution}
+            attribute_mapped :generalizes, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :generalizes}
+            attribute_mapped :usedBy, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :usedBy}
+            attribute_mapped :reliesOn, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :ontologyRelatedTo}
+            attribute_mapped :similar, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :similarTo}
+            attribute_mapped :comesFromTheSameDomain, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :comesFromTheSameDomain}
+            attribute_mapped :hasEquivalencesWith, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :isAlignedTo}
+            attribute_mapped :backwardCompatibleWith, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :isBackwardCompatibleWith}
+            attribute_mapped :incompatibleWith, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :isIncompatibleWith}
+            attribute_mapped :hasDisparateModellingWith, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :hasDisparateModelling}
+            attribute_mapped :hasDisjunctionsWith, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :hasDisjunctionsWith}
+            attribute_mapped :workTranslation, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :workTranslation}
+            attribute_mapped :translationOfWork, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :translationOfWork}
+            attribute_mapped :uriRegexPattern, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :uriRegexPattern}
+            attribute_mapped :preferredNamespaceUri, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :preferredNamespaceUri}
+            attribute_mapped :preferredNamespacePrefix, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :preferredNamespacePrefix}
+            attribute_mapped :exampleResource, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :exampleIdentifier}
+            attribute_mapped :primaryTopic, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :keyClasses}
+            attribute_mapped :rootResource, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :roots}
+            attribute_mapped :changes, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :diffFilePath}
+            attribute_mapped :associatedMedia, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :associatedMedia}
+            attribute_mapped :depiction, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :depiction}
+            attribute_mapped :logo, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :logo}
+            attribute_mapped :metrics, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :metrics}
+
+
+            attribute :ontology, type: :ontology
+            
+            links_load :acronym
+            link_to LinkedData::Hypermedia::Link.new("distributions", lambda {|s| "artefacts/#{s.acronym}/distributions"}, LinkedData::Models::SemanticArtefactDistribution.type_uri),
+                    LinkedData::Hypermedia::Link.new("record", lambda {|s| "artefacts/#{s.acronym}/record"}),
+                    LinkedData::Hypermedia::Link.new("resources", lambda {|s| "artefacts/#{s.acronym}/resources"}),
+                    LinkedData::Hypermedia::Link.new("single_resource", lambda {|s| "artefacts/#{s.acronym}/resources/{:resourceID}"}),
+                    LinkedData::Hypermedia::Link.new("classes", lambda {|s| "artefacts/#{s.acronym}/classes"}, LinkedData::Models::Class.uri_type),
+                    LinkedData::Hypermedia::Link.new("concepts", lambda {|s| "artefacts/#{s.acronym}/concepts"}, LinkedData::Models::Class.uri_type),
+                    LinkedData::Hypermedia::Link.new("properties", lambda {|s| "artefacts/#{s.acronym}/properties"}, "#{Goo.namespaces[:metadata].to_s}Property"),
+                    LinkedData::Hypermedia::Link.new("individuals", lambda {|s| "artefacts/#{s.acronym}/classes/roots"}, LinkedData::Models::Class.uri_type),
+                    LinkedData::Hypermedia::Link.new("schemes", lambda {|s| "artefacts/#{s.acronym}/schemes"}, LinkedData::Models::SKOS::Scheme.uri_type),
+                    LinkedData::Hypermedia::Link.new("collection", lambda {|s| "artefacts/#{s.acronym}/collections"}, LinkedData::Models::SKOS::Collection.uri_type),
+                    LinkedData::Hypermedia::Link.new("labels", lambda {|s| "artefacts/#{s.acronym}/labels"}, LinkedData::Models::SKOS::Label.uri_type)
+
+            
+            serialize_default :acronym, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
+                              :license, :rightsHolder, :description, :landingPage, :keyword, :bibliographicCitation, :contactPoint,
+                              :contributor, :publisher, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, 
+                              :competencyQuestion, :wasGeneratedBy, :hasFormat, :includedInDataCatalog, :semanticArtefactRelation
+
+            serialize_never :ontology
+
+            def self.artefact_id_generator(ss)
+                ss.ontology.bring(:acronym) if !ss.ontology.loaded_attributes.include?(:acronym)
+                raise ArgumentError, "Acronym is nil for ontology  #{ss.ontology.id} to generate id" if ss.ontology.acronym.nil?
+                return RDF::URI.new(
+                  "#{(Goo.id_prefix)}artefacts/#{CGI.escape(ss.ontology.acronym.to_s)}"
+                )
+            end
+
+            def initialize
+                super
+            end
+
+            def self.type_uri
+                self.namespace[self.model_name].to_s
+            end
+
+            def self.find(artefact_id)
+                ont = Ontology.find(artefact_id).include(:acronym).first
+                return nil unless ont
+
+                new.tap do |sa|
+                    sa.ontology = ont
+                    sa.acronym = ont.acronym
+                end
+            end
+
+            # Method to fetch specific attributes and populate the SemanticArtefact instance
+            def bring(*attributes)
+                attributes = [attributes] unless attributes.is_a?(Array)
+                latest = @ontology.latest_submission(status: :ready)
+                attributes.each do |attr|
+                    mapping = self.class.attribute_mappings[attr]
+                    next if mapping.nil?
+
+                    model = mapping[:model]
+                    mapped_attr = mapping[:attribute]
+                    
+                    case model
+                    when :ontology
+                        @ontology.bring(*mapped_attr)
+                        self.send("#{attr}=", @ontology.send(mapped_attr)) if @ontology.respond_to?(mapped_attr)
+                    when :ontology_submission
+                        if latest
+                            latest.bring(*mapped_attr)
+                            self.send("#{attr}=", latest.send(mapped_attr))
+                        end
+                    end
+                end
+            end
+
+            def self.all_artefacts(options = {})
+                onts = if options[:also_include_views]
+                        Ontology.where.to_a
+                    else
+                        Ontology.where.filter(Goo::Filter.new(:viewOf).unbound).include(:acronym).to_a
+                    end
+        
+                onts.map do |o|
+                    new.tap do |sa|
+                        sa.ontology = o
+                        sa.acronym = o.acronym
+                        sa.bring(*options[:includes]) if options[:includes]
+                    end
+                end
+            end
+
+            def latest_distribution(status)
+                sub = @ontology.latest_submission(status)
+                SemanticArtefactDistribution.new(sub) unless sub.nil?
+            end
+
+            def distribution(dist_id)
+                sub = @ontology.submission(dist_id)
+                SemanticArtefactDistribution.new(sub) unless sub.nil?
+            end
+        
+            def all_distributions(options = {})
+                status = options[:status]
+                to_bring = options[:includes]
+                @ontology.bring(:submissions)
+        
+                @ontology.submissions.map do |submission|
+                    SemanticArtefactDistribution.new(submission).tap do |dist|
+                        dist.bring(*to_bring) if to_bring
+                    end
+                end
+            end
+    
+            def analytics
+                @ontology.analytics
+            end
+            
+        end
+    end
+end
+  
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
new file mode 100644
index 00000000..03583c66
--- /dev/null
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
@@ -0,0 +1,116 @@
+module LinkedData
+    module Models
+
+        class SemanticArtefactDistribution < LinkedData::Models::Base
+            
+            class << self
+                attr_accessor :attribute_mappings
+                def attribute_mapped(name, **options)
+                  mapped_to = options.delete(:mapped_to)
+                  attribute(name, **options)
+                  @attribute_mappings ||= {}
+                  @attribute_mappings[name] = mapped_to if mapped_to
+                end
+            end
+
+            model :SemanticArtefactDistribution, namespace: :mod, name_with: ->(s) { distribution_id_generator(s) }
+            
+            # SAD attrs that map with submission
+            attribute_mapped :distributionId, mapped_to: { model: :ontology_submission, attribute: :submissionId }
+            attribute_mapped :title, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :URI }
+            attribute_mapped :deprecated, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :deprecated }
+            attribute_mapped :hasRepresentationLanguage, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasOntologyLanguage }
+            attribute_mapped :hasFormalityLevel, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasFormalityLevel }
+            attribute_mapped :hasSyntax, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasOntologySyntax }
+            attribute_mapped :useGuidelines, namespace: :cc, mapped_to: { model: :ontology_submission, attribute: :useGuidelines }
+            attribute_mapped :description, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :description }
+            attribute_mapped :created, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :released }
+            attribute_mapped :modified, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :modificationDate }
+            attribute_mapped :valid, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :valid }
+            attribute_mapped :curatedOn, namespace: :pav, mapped_to: { model: :ontology_submission, attribute: :curatedOn }
+            attribute_mapped :dateSubmitted, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :creationDate }
+            attribute_mapped :conformsToKnowledgeRepresentationParadigm, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :conformsToKnowledgeRepresentationParadigm }
+            attribute_mapped :usedEngineeringMethodology, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :usedOntologyEngineeringMethodology }
+            attribute_mapped :prefLabelProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :prefLabelProperty }
+            attribute_mapped :synonymProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :synonymProperty }
+            attribute_mapped :definitionProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :definitionProperty }
+            attribute_mapped :authorProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :authorProperty }
+            attribute_mapped :obsoleteProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :obsoleteProperty }
+            attribute_mapped :createdProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :createdProperty }
+            attribute_mapped :modifiedProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :modifiedProperty }
+            attribute_mapped :hierarchyProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hierarchyProperty }
+            attribute_mapped :accessURL, namespace: :dcat, mapped_to: { model: :ontology_submission, attribute: :pullLocation }
+            attribute_mapped :downloadURL, namespace: :dcat, mapped_to: { model: :ontology_submission, attribute: :dataDump }
+            attribute_mapped :endpoint, namespace: :sd, mapped_to: { model: :ontology_submission, attribute: :endpoint }
+            attribute_mapped :imports, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :useImports }
+            attribute_mapped :obsoleteParent, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :obsoleteParent }
+            attribute_mapped :metadataVoc, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :metadataVoc }
+            attribute_mapped :metrics, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :metrics }
+            attribute_mapped :numberOfClasses, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :class_count }
+
+            # SAD attrs that map with metrics
+            attribute_mapped :numberOfAxioms, namespace: :mod, mapped_to: { model: :metric, attribute: :numberOfAxioms }
+            attribute_mapped :maxDepth, namespace: :mod, mapped_to: { model: :metric, attribute: :maxDepth }
+            attribute_mapped :maxChildCount, namespace: :mod, mapped_to: { model: :metric, attribute: :maxChildCount }
+            attribute_mapped :averageChildCount, namespace: :mod, mapped_to: { model: :metric, attribute: :averageChildCount }
+            attribute_mapped :classesWithOneChild, namespace: :mod, mapped_to: { model: :metric, attribute: :classesWithOneChild }
+            attribute_mapped :classesWithMoreThan25Children, namespace: :mod, mapped_to: { model: :metric, attribute: :classesWithMoreThan25Children }
+            attribute_mapped :classesWithNoDefinition, namespace: :mod, mapped_to: { model: :metric, attribute: :classesWithNoDefinition }
+
+
+            # Attr special to SemanticArtefactDistribution
+            attribute :submission, type: :ontology_submission
+            
+            serialize_default :distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, 
+                              :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, 
+                              :synonymProperty, :definitionProperty, :accessURL, :downloadURL
+
+            serialize_never :submission
+
+
+            def self.distribution_id_generator(ss)
+                ss.submission.ontology.bring(:acronym) if !ss.submission.ontology.loaded_attributes.include?(:acronym)
+                raise ArgumentError, "Acronym is nil to generate id" if ss.submission.ontology.acronym.nil?
+                return RDF::URI.new(
+                  "#{(Goo.id_prefix)}artefacts/#{CGI.escape(ss.submission.ontology.acronym.to_s)}/distributions/#{ss.submission.submissionId.to_s}"
+                )
+            end
+
+
+            def initialize(sub)
+                super()
+                @submission = sub
+                @submission.bring(*[:submissionId, :ontology=>[:acronym]])
+                @distributionId = sub.submissionId
+            end
+
+            def self.type_uri
+                self.namespace[self.model_name].to_s
+            end
+
+            # Method to fetch specific attributes and populate the SemanticArtefact instance
+            def bring(*attributes)
+                attributes = [attributes] unless attributes.is_a?(Array)
+                attributes.each do |attr|
+                    mapping = self.class.attribute_mappings[attr]
+                    next if mapping.nil?
+
+                    model = mapping[:model]
+                    mapped_attr = mapping[:attribute]
+                    
+                    case model
+                    when :ontology_submission
+                        @submission.bring(*mapped_attr)
+                        self.send("#{attr}=", @submission.send(mapped_attr)) if @submission.respond_to?(mapped_attr)
+                    when :metrics
+                        next
+                        # TO-DO
+                    end
+                end
+            end
+
+        end
+
+    end
+end
+  
\ No newline at end of file
diff --git a/test/models/mod/test_artefact.rb b/test/models/mod/test_artefact.rb
new file mode 100644
index 00000000..8d254040
--- /dev/null
+++ b/test/models/mod/test_artefact.rb
@@ -0,0 +1,98 @@
+require_relative "../../test_case"
+require_relative '../test_ontology_common'
+
+class TestArtefact < LinkedData::TestOntologyCommon
+
+    def test_create_artefact
+        sa = LinkedData::Models::SemanticArtefact.new
+        assert_equal LinkedData::Models::SemanticArtefact , sa.class
+    end
+
+    def test_find_artefact
+        create_test_ontology
+        sa = LinkedData::Models::SemanticArtefact.find('STY')
+        assert_equal LinkedData::Models::SemanticArtefact , sa.class
+        assert_equal "STY", sa.acronym
+        assert_equal "STY", sa.ontology.acronym
+    end
+
+
+    def test_goo_attrs_to_load
+        attrs = LinkedData::Models::SemanticArtefact.goo_attrs_to_load([])
+        assert_equal [:acronym, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
+        :license, :rightsHolder, :description, :landingPage, :keyword, :bibliographicCitation, :contactPoint,
+        :contributor, :publisher, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, 
+        :competencyQuestion, :wasGeneratedBy, :hasFormat, :includedInDataCatalog, :semanticArtefactRelation], attrs
+    end
+
+    def test_bring_attrs
+        create_test_ontology
+        r = LinkedData::Models::SemanticArtefact.find('STY')
+        r.bring(*LinkedData::Models::SemanticArtefact.goo_attrs_to_load([:all]))
+        ont = r.ontology
+        latest_sub = r.ontology.latest_submission
+        latest_sub.bring(*LinkedData::Models::OntologySubmission.goo_attrs_to_load([:all]))
+
+        LinkedData::Models::SemanticArtefact.attribute_mappings.each do |artefact_key, mapping|
+            value_artefact_attr = r.send(artefact_key)
+            mapped_attr = mapping[:attribute]
+
+            case mapping[:model]
+            when :ontology
+                value_ontology_attr = ont.send(mapped_attr)
+                if value_ontology_attr.is_a?(Array)
+                    value_artefact_attr.each_with_index do |v, i|
+                        assert_equal v.id, value_ontology_attr[i].id
+                    end
+                else
+                    assert_equal value_artefact_attr, value_ontology_attr
+                end
+            when :ontology_submission
+                value_submission_attr = latest_sub.send(mapped_attr)
+
+                if value_submission_attr.is_a?(Array)
+                    value_artefact_attr.each_with_index do |v, i|
+                        assert_equal v.id, value_submission_attr[i].id
+                    end
+                else
+                    assert_equal value_artefact_attr, value_submission_attr
+                end
+            end
+        end
+
+        assert_equal r.analytics, ont.analytics
+    end
+
+    def test_latest_distribution
+        create_test_ontology
+        sa = LinkedData::Models::SemanticArtefact.find('STY')
+        assert_equal "STY", sa.acronym
+        latest_distribution = sa.latest_distribution(status: :any)
+
+        assert_equal LinkedData::Models::SemanticArtefactDistribution , latest_distribution.class
+        assert_equal 1, latest_distribution.distributionId
+        assert_equal 1, latest_distribution.submission.submissionId
+    end
+    
+    def test_distributions
+        create_test_ontology
+        r = LinkedData::Models::SemanticArtefact.find('STY')
+        options = {
+            status: "ANY",
+            includes: LinkedData::Models::SemanticArtefactDistribution.goo_attrs_to_load([])
+        }
+        all_distros = r.all_distributions(options)
+
+        assert_equal Array, all_distros.class
+        assert_equal 1, all_distros.length
+        assert_equal 1, all_distros.length
+        assert_equal LinkedData::Models::SemanticArtefactDistribution, all_distros[0].class
+        assert_equal Set[:distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, :synonymProperty, :definitionProperty, :accessURL, :downloadURL], all_distros[0].loaded_attributes
+    end
+    
+    private
+    def create_test_ontology
+        acr = "STY"
+        init_test_ontology_msotest acr
+    end
+end
\ No newline at end of file
diff --git a/test/models/mod/test_artefact_distribution.rb b/test/models/mod/test_artefact_distribution.rb
new file mode 100644
index 00000000..2219967a
--- /dev/null
+++ b/test/models/mod/test_artefact_distribution.rb
@@ -0,0 +1,36 @@
+require_relative "../../test_case"
+require_relative '../test_ontology_common'
+
+class TestArtefactDistribution < LinkedData::TestOntologyCommon
+
+    def test_create_artefact_distribution
+        create_test_ontology
+        sa = LinkedData::Models::SemanticArtefact.find('STY')
+        sa.ontology.bring(*:submissions)
+        sad = LinkedData::Models::SemanticArtefactDistribution.new(sa.ontology.submissions[0])
+        assert_equal LinkedData::Models::SemanticArtefactDistribution , sad.class
+        assert_equal "http://data.bioontology.org/artefacts/STY/distributions/1", sad.id.to_s
+    end
+
+    def test_goo_attrs_to_load
+        attrs = LinkedData::Models::SemanticArtefactDistribution.goo_attrs_to_load([])
+        assert_equal [:distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, 
+        :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, 
+        :synonymProperty, :definitionProperty, :accessURL, :downloadURL], attrs
+    end
+
+    def test_bring_attrs
+        create_test_ontology
+        sa = LinkedData::Models::SemanticArtefact.find('STY')
+        sa.ontology.bring(*:submissions)
+        sad = LinkedData::Models::SemanticArtefactDistribution.new(sa.ontology.submissions[0])
+        sad.bring(*LinkedData::Models::SemanticArtefactDistribution.goo_attrs_to_load([:all]))
+    end
+
+    private
+    def create_test_ontology
+        acr = "STY"
+        init_test_ontology_msotest acr
+    end
+    
+end
\ No newline at end of file

From 92434e4a5e956422d4a8c0ba0b84f8b9d2cce72a Mon Sep 17 00:00:00 2001
From: Bilel Kihal <61744974+Bilelkihal@users.noreply.github.com>
Date: Fri, 24 Jan 2025 13:41:06 +0100
Subject: [PATCH 07/66] Feature: Add test parse ontology has iri label (#180)

* add test parse ontology has iri label

* update gemfile.lock
---
 test/data/ontology_files/apto.owl      | 11147 +++++++++++++++++++++++
 test/models/test_class_request_lang.rb |    39 +-
 2 files changed, 11175 insertions(+), 11 deletions(-)
 create mode 100644 test/data/ontology_files/apto.owl

diff --git a/test/data/ontology_files/apto.owl b/test/data/ontology_files/apto.owl
new file mode 100644
index 00000000..ceb167c5
--- /dev/null
+++ b/test/data/ontology_files/apto.owl
@@ -0,0 +1,11147 @@
+<?xml version="1.0"?>
+<Ontology xmlns="http://www.w3.org/2002/07/owl#"
+     xml:base="https://w3id.org/APTO#"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:xml="http://www.w3.org/XML/1998/namespace"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     ontologyIRI="https://w3id.org/APTO#">
+    <Prefix name="" IRI="https://w3id.org/APTO#"/>
+    <Prefix name="ro" IRI="http://purl.obolibrary.org/obo/RO_"/>
+    <Prefix name="bco" IRI="http://purl.obolibrary.org/obo/BCO_"/>
+    <Prefix name="owl" IRI="http://www.w3.org/2002/07/owl#"/>
+    <Prefix name="rdf" IRI="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
+    <Prefix name="sdo" IRI="https://schema.org/"/>
+    <Prefix name="xml" IRI="http://www.w3.org/XML/1998/namespace"/>
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+        <AbbreviatedIRI>agrovoc:c_12920</AbbreviatedIRI>
+        <Literal xml:lang="en">Okra</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_12920</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Quiabo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_12934</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cebola</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_12934</AbbreviatedIRI>
+        <Literal xml:lang="en">Onion</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_12934</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/281d59c6d9c8fe4b4e627a3aa56a9670</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13120</AbbreviatedIRI>
+        <Literal xml:lang="en">Parsley</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13120</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Salsa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_13120</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Salsinha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_13120</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Salsa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13132</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Leite pasteurizado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13132</AbbreviatedIRI>
+        <Literal xml:lang="en">Pasteurized milk</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_13132</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/6a3e0cb43f80ee57b0895dc0870d5f12</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13394</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Abacaxi</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13394</AbbreviatedIRI>
+        <Literal xml:lang="en">Pineapple</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_13394</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/4b96d5c1ff312eea069ddc760794963d</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13551</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Batata</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_13551</AbbreviatedIRI>
+        <Literal xml:lang="en">Potatoe</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14010</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Centeio</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14010</AbbreviatedIRI>
+        <Literal xml:lang="en">Rye</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1423</AbbreviatedIRI>
+        <Literal xml:lang="en">Cellulose</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1423</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Celulose</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_1423</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/6a324a803fcf2cb57faddfe4ea18326a</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14386</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Trigo mole</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14386</AbbreviatedIRI>
+        <Literal xml:lang="en">soft wheat</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_14386</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Trigo brando</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_14386</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Trigo mole</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14477</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Soja</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14477</AbbreviatedIRI>
+        <Literal xml:lang="en">Soybean</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_14477</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Soja em Grão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_14477</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/bdc7645e04618dd9f14f06d96ab6967d</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14727</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Pimentão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14727</AbbreviatedIRI>
+        <Literal xml:lang="en">Sweet pepper</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_14727</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/a5f74e850f12620e61ba8013e75b59b4</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14729</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Batata-doce</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14729</AbbreviatedIRI>
+        <Literal xml:lang="en">Sweet potatoe</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1473</AbbreviatedIRI>
+        <Literal xml:lang="en">Cereal product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1473</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto à base de cereal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_1473</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/7f875377fcab131e0629c16fc503e31a</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1474</AbbreviatedIRI>
+        <Literal xml:lang="en">Cereal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1474</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cereal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_1474</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/42a1751fa85f0a5024720bd40f350ba3</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14791</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Inhame</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_14791</AbbreviatedIRI>
+        <Literal xml:lang="en">Taro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_14791</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cará</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_14791</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Taro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_14791</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/3886bc9c9655241c5737d45eec5447bb</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_14791</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Inhame</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15068</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Leite UHT</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15068</AbbreviatedIRI>
+        <Literal xml:lang="en">UHT milk</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_15068</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/2428d4ce74f58cd871700239f5136f3f</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1507</AbbreviatedIRI>
+        <Literal xml:lang="en">Cheese</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1507</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Queijo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_1507</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/c4d194cfc9f10a4885bd388564036bef</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15277</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Melancia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15277</AbbreviatedIRI>
+        <Literal xml:lang="en">Watermelon</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_15277</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/5e8f4e06a72887b71ce41638fca221cf</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1540</AbbreviatedIRI>
+        <Literal xml:lang="en">Chicken</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1540</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Frango</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_1540</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/10d5a0555a83f8bb41290c1e14e603e3</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15463</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Iogurte</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15463</AbbreviatedIRI>
+        <Literal xml:lang="en">Yoghurt</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_15463</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/2a65973eca6cc9283ab62acf05a41ba2</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15685</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Especiaria</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15685</AbbreviatedIRI>
+        <Literal xml:lang="en">Spice</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_15685</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/8eb41f06f00ccb7e912de9c6782ccea4</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15742</AbbreviatedIRI>
+        <Literal xml:lang="en">Processed product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15742</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto processado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_15742</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/7d7cb76048f9f558389d3ef8c77f4e82</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15978</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne caprina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_15978</AbbreviatedIRI>
+        <Literal xml:lang="en">Goat meat</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_15978</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne de caprino</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_15978</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/bf2ffd84f991885387456605b1decce0</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_15978</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne caprina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16080</AbbreviatedIRI>
+        <Literal xml:lang="en">Cow milk</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16080</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Leite de vaca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16083</AbbreviatedIRI>
+        <Literal xml:lang="en">Goat milk</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16083</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Leite de cabra</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_16083</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/6b1c99fc07dc0e133ab5b1282f5ed6ea</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1641</AbbreviatedIRI>
+        <Literal xml:lang="en">Citrus fruit</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1641</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fruta cítrica</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_1641</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Citrus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_1641</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fruta cítrica</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16477</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Açúcar de cana</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16477</AbbreviatedIRI>
+        <Literal xml:lang="en">Cane sugar</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_16477</AbbreviatedIRI>
+        <Literal>https://sistemas.sede.embrapa.br/agrotermos/resources/9852e4677bf923bfb2ac3b6136924a0b</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16508</AbbreviatedIRI>
+        <Literal xml:lang="en">Soybean oil</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_16508</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Óleo de soja</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1926</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Algodão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1926</AbbreviatedIRI>
+        <Literal xml:lang="en">Cotton</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_1926</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/d8f3d67c92743cb979008b6372af3176</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_1939</AbbreviatedIRI>
+        <Literal xml:lang="en">Cow</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_1939</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Vaca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_1939</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/90f077d7759d0d4d21e6867727d4b2bd</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_2384</AbbreviatedIRI>
+        <Literal xml:lang="en">Dried milk</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_2384</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Leite em pó</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_2384</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/7d3e6a0eddeeb429cd94658f5c6f2626</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_24000</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne de frango</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_24000</AbbreviatedIRI>
+        <Literal xml:lang="en">Chicken meat</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_24000</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne de galinha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_24000</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/5bdef85b388203f1f3aa24880672146c</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_249</AbbreviatedIRI>
+        <Literal xml:lang="en">Alcohol</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_249</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Álcool</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_249</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/79b89ad67167fad67c264a54ef962b44</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_2502</AbbreviatedIRI>
+        <Literal xml:lang="en">Egg</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_2502</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Ovo</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_2502</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/8472071ced24fe2226f7ca33cff91272</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25470</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Coco-da-baía</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_25470</AbbreviatedIRI>
+        <Literal xml:lang="en">Coconut</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_25470</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Coco</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25473</AbbreviatedIRI>
+        <Literal xml:lang="en">Cottonseed</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25473</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente de algodão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_25473</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Caroço de algodão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/a0eb8f32cd10ba23677e89f9e871ef04</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25473</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente de algodão</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_25490</AbbreviatedIRI>
+        <Literal xml:lang="en">Oil seed</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25490</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente oleaginosa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25490</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Oleaginosas</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25490</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/11d1922eb5e932db908581eb83e3f457</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25499</AbbreviatedIRI>
+        <Literal xml:lang="en">Rapeseed</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25499</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente de canola</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25499</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Canola</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25499</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente de colza</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <Literal xml:lang="en">https://sistemas.sede.embrapa.br/agrotermos/resources/695b2bf6e87d16f2981ae004561f7ea8</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25499</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente de canola</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_25507</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente de girassol</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_25507</AbbreviatedIRI>
+        <Literal xml:lang="en">Sunflower seed</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_25507</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Girassol</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25507</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/f7ce8e4b85f4e1bd909d8ca66e203db0</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_25507</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Semente de girassol</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_25511</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Farinha de trigo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_25511</AbbreviatedIRI>
+        <Literal xml:lang="en">Wheat flour</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_26767</AbbreviatedIRI>
+        <Literal xml:lang="en">Dairy cow</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_26767</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Vaca leiteira</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/99c85c3f0a8cf76f365de195ab35f8a3</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_28379</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Café em grãos</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_28379</AbbreviatedIRI>
+        <Literal xml:lang="en">Coffee beans</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_28379</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Café</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_28379</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Café em grãos</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_29108</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Animal útil</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_29108</AbbreviatedIRI>
+        <Literal xml:lang="en">Useful animal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_29108</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/ba94e65756b89654616f98cce03aee8a</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_2943</AbbreviatedIRI>
+        <Literal xml:lang="en">Fish</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_2943</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Peixe</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_2943</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/cb4bb0dafca8dc9e0452723bc627435d</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_2988</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Farinha</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_2988</AbbreviatedIRI>
+        <Literal xml:lang="en">Flour</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_2988</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/9df38bda0adee40b17d54026429d0fdb</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_29989</AbbreviatedIRI>
+        <Literal xml:lang="en">Processed plant product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_29989</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto de origem vegetal processado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3049</AbbreviatedIRI>
+        <Literal xml:lang="en">Forest product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3049</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto florestal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3105</AbbreviatedIRI>
+        <Literal xml:lang="en">Freshwater fishe</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3105</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Peixe de água doce</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3131</AbbreviatedIRI>
+        <Literal xml:lang="en">Fruit</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3131</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fruta</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_3131</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">https://sistemas.sede.embrapa.br/agrotermos/resources/233926cc509b0d57b7188653097d1eec</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_32720</AbbreviatedIRI>
+        <Literal xml:lang="en">Tilapia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_32720</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Tilápia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_32720</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/a30d5e4e0ec8526c396994bd8c4e637b</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_331566</AbbreviatedIRI>
+        <Literal xml:lang="en">Beans</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_331566</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Feijão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_331566</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/62b8288c2867583bbbfc172290439710</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3324</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Caprino</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3324</AbbreviatedIRI>
+        <Literal xml:lang="en">Goat</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_3324</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/fb00d24ff5fe1e47871b7876841f5024</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3346</AbbreviatedIRI>
+        <Literal xml:lang="en">Grain</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3346</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Grão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_3346</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/b868e45362655d1998f3bee01f991d94</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_3359</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Uva</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3359</AbbreviatedIRI>
+        <Literal xml:lang="en">grape</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_3359</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/d3da5eb0da6870aec2297a935d7159a8</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3376</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Hortaliça de folha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3376</AbbreviatedIRI>
+        <Literal xml:lang="en">Leaf vegetable</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3376</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/33ad8f317947f7c5a1b849e49d5483e2</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_3376</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Folhosas</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_3376</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Hortaliça de folha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3609</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Couros e peles</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3609</AbbreviatedIRI>
+        <Literal xml:lang="en">Hides and skins</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_3609</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/378cb44a9af7ef24dff9873abb5fb8b2</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_36410</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Açúcar refinado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_36410</AbbreviatedIRI>
+        <Literal xml:lang="en">Refined sugar</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_36410</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/891c923495e2fae8b1a751afb2956895</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3652</AbbreviatedIRI>
+        <Literal xml:lang="en">Honey</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3652</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Mel de abelha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_3652</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/8f50ba9e7d863515cdc192cfdce1eb41</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_36538</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Casulo de seda</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_36538</AbbreviatedIRI>
+        <Literal xml:lang="en">Cocoon</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_36538</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Casulo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_36538</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/3fb7f54dc80462112da0aaf9e280a5d3</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_36538</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Casulo de seda</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3654</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Abelha melífera</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3654</AbbreviatedIRI>
+        <Literal xml:lang="en">Honey bee</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_3654</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Abelha produtora de mel</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_3654</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Abelha melífera</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_37735</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Abóbora</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_37735</AbbreviatedIRI>
+        <Literal xml:lang="en">Squashe</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_37735</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/0641ab8e01b7f3b5fe5c340082784021</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3881</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Composto inorgânico</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_3881</AbbreviatedIRI>
+        <Literal xml:lang="en">Inorganic compound</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_3881</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/9bc1d45dc6914580199935a8c1e26709</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4065</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Juta</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4065</AbbreviatedIRI>
+        <Literal xml:lang="en">Jute</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4070</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Couve</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4070</AbbreviatedIRI>
+        <Literal xml:lang="en">Kale</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_4070</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/5779a2c5efecaa6c45833f93794286e1</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_4163</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cordeiro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4163</AbbreviatedIRI>
+        <Literal xml:lang="en">Lamb</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_4163</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/8731dc7e812594c5353915ed54fbb5ba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4241</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Couro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4241</AbbreviatedIRI>
+        <Literal xml:lang="en">Leather</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4259</AbbreviatedIRI>
+        <Literal xml:lang="en">Lemon</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4259</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Limão</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_4259</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/23a6a6f019e446235d9251e7bf1939c4</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_438</AbbreviatedIRI>
+        <Literal xml:lang="en">Animal product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_438</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto de origem animal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_438</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/ec624cf8e3122d30f5c35286cfb3efc7</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4397</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Gado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4397</AbbreviatedIRI>
+        <Literal xml:lang="en">Livestock</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4647</AbbreviatedIRI>
+        <Literal xml:lang="en">Mate</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4647</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Mate</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_4647</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Erva mate</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_4647</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/7c13aea47d6e6ddefd62d2c00653b2a4</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_4647</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Mate</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4669</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4669</AbbreviatedIRI>
+        <Literal xml:lang="en">Meat</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_4669</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/409f4cd5e6a103f5a0d4bfcc18215b0e</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4826</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Leite</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4826</AbbreviatedIRI>
+        <Literal xml:lang="en">Milk</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4827</AbbreviatedIRI>
+        <Literal xml:lang="en">Milk by-product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4827</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Subproduto do leite</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_4827</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/bea2cf5e51ed952a0f398806ac737878</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4830</AbbreviatedIRI>
+        <Literal xml:lang="en">Milk product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4830</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto derivado do leite</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_4830</AbbreviatedIRI>
+        <Literal xml:lang="en">Dairy product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_4830</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/124628c533f0720ccf575553b4feff1a</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_4830</AbbreviatedIRI>
+        <Literal xml:lang="en">Milk product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4838</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Milheto</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_4838</AbbreviatedIRI>
+        <Literal xml:lang="en">millet</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_4838</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">mileto</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_4838</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">milhete</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5015</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne de carneiro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5015</AbbreviatedIRI>
+        <Literal xml:lang="en">Mutton</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_5015</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/2ed585b38f8e1a8e5c7278354ea40e11</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5066</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cabra</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5066</AbbreviatedIRI>
+        <Literal xml:lang="en">Nannygoat</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_5066</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/7c21a0ecb0e51b244a6ba16f35a1047f</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5287</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Aveia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5287</AbbreviatedIRI>
+        <Literal xml:lang="en">Oat</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_5287</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/b54fb2fcde17a9c2da33470ae95fe39f</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5330</AbbreviatedIRI>
+        <Literal xml:lang="en">Oil palm</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5330</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Palmeira Oleaginosa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_5330</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/821d61281118d169f36bb25a77c5fe48</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_541</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Maçã</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_541</AbbreviatedIRI>
+        <Literal xml:lang="en">apple</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5548</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Papel</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5548</AbbreviatedIRI>
+        <Literal xml:lang="en">Paper</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_5548</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/acbf61dc603a375f7841d5bfd5ca928f</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5638</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Pêssego</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5638</AbbreviatedIRI>
+        <Literal xml:lang="en">peache</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_566</AbbreviatedIRI>
+        <Literal xml:lang="en">Arabica coffee</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_566</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Café arábica</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5c9e76bc</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Rúcula</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_5c9e76bc</AbbreviatedIRI>
+        <Literal xml:lang="en">rocket</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_5c9e76bc</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/8c6d70bd7e4b4f0fa5cca06e224ac3ba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6120</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne suína</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6120</AbbreviatedIRI>
+        <Literal xml:lang="en">Pork</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_6120</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne de porco</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_6120</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/03ff0226008ff0fe87cf33873a786fb0</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_6120</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne suína</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6145</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Ave de capoeira</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6145</AbbreviatedIRI>
+        <Literal xml:lang="en">Poultry</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6599</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Arroz</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6599</AbbreviatedIRI>
+        <Literal xml:lang="en">Rice</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_6599</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/cd762ef822be9c0c8b1d8b2c3633eddf</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6626</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Café robusta</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6626</AbbreviatedIRI>
+        <Literal xml:lang="en">Robusta coffee</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6678</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Borracha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6678</AbbreviatedIRI>
+        <Literal xml:lang="en">Rubber</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_6678</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Borracha natural</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_6678</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/2b5b436e38e557be6333ee663cc234f9</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_6678</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Borracha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6679</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Planta produtora de borracha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6679</AbbreviatedIRI>
+        <Literal xml:lang="en">Rubber crops</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_6679</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/028e219a04f2febda150fadb1d886712</Literal>
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+        <AbbreviatedIRI>agrovoc:c_6ffce1ab</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fubá</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_6ffce1ab</AbbreviatedIRI>
+        <Literal xml:lang="en">Maize meal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_6ffce1ab</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fubá de milho</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_6ffce1ab</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/f9c9caaa48da729d2a8c0328388e9565</Literal>
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+        <AbbreviatedIRI>agrovoc:c_6ffce1ab</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fubá</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7030</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Ovino</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7030</AbbreviatedIRI>
+        <Literal xml:lang="en">sheep</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7030</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/d7c7bd6f1ed5b065106e6cb98cbce396</Literal>
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+        <AbbreviatedIRI>agrovoc:c_7064</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Bicho-da-seda</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7064</AbbreviatedIRI>
+        <Literal xml:lang="en">Silkworm</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7086</AbbreviatedIRI>
+        <Literal xml:lang="en">Sisal</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7086</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Sisal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
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+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/941490e4a8761000a77ebdd4b7f3a54d</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7249</AbbreviatedIRI>
+        <Literal xml:lang="en">Sorghum grain</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7249</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Sorgo</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_7249</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Sorgo granífero</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7249</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/70e2bc0a07054af305aa5c113797a240</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_7249</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Sorgo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7413</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Planta estimulante</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7413</AbbreviatedIRI>
+        <Literal xml:lang="en">Stimulant crop</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7413</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/8cfa9f207f98fd89447017bc69313888</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7498</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Açúcar</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7498</AbbreviatedIRI>
+        <Literal xml:lang="en">Sugar</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7498</AbbreviatedIRI>
+        <Literal>https://sistemas.sede.embrapa.br/agrotermos/resources/f34ae1525ab8cba9dfe78de135ac81f0</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7550</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Laranja</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7550</AbbreviatedIRI>
+        <Literal xml:lang="en">Sweet orange</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7550</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/cf75ceb29197f57b19dcb8b4757368e8</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7555</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Suíno</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7555</AbbreviatedIRI>
+        <Literal xml:lang="en">Swine</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7555</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/91125fa713391ed5b8fcdf4ca818d011</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7601</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Tangerina</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7601</AbbreviatedIRI>
+        <Literal xml:lang="en">Tangerine</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_7601</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Bergamota</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_7601</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Mandarina</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_7601</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Mexerica</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7601</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/d7b920215594108bd28b35702cb27236</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7655</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fruta de clima temperado</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7655</AbbreviatedIRI>
+        <Literal xml:lang="en">Temperate fruit</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_7805</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Tomate</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7805</AbbreviatedIRI>
+        <Literal xml:lang="en">Tomatoe</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7805</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/02e409c8bf00d35d7a7d61c56829da7f</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_785</AbbreviatedIRI>
+        <Literal xml:lang="en">Baked good</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_785</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto de panificação</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7974</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Fruta tropical</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_7974</AbbreviatedIRI>
+        <Literal xml:lang="en">Tropical fruit</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_7974</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/bfb9ab9aadfc6cb021ca3d04221efc65</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_806</AbbreviatedIRI>
+        <Literal xml:lang="en">Banana</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_806</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Banana</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_806</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/72b302bf297a228a75730123efef7c41</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8115</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Artrópode útil</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8115</AbbreviatedIRI>
+        <Literal xml:lang="en">Useful arthropod</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8170</AbbreviatedIRI>
+        <Literal xml:lang="en">Plant oil</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8170</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Óleo vegetal</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8170</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/f3577d6a7af8c40945365082dd588456</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8171</AbbreviatedIRI>
+        <Literal xml:lang="en">Plant product</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8171</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto de origem vegetal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8171</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/67abbd6fd76a07e292828e3d15b34100</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8174</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Produto hortícola</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8174</AbbreviatedIRI>
+        <Literal xml:lang="en">Vegetable</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_823</AbbreviatedIRI>
+        <Literal xml:lang="en">Barley</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_823</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cevada</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8335</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Planta produtora de cera</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8335</AbbreviatedIRI>
+        <Literal xml:lang="en">Wax plant</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8335</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/a5528d684a04bc1651f0879ed04817d4</Literal>
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+        <AbbreviatedIRI>agrovoc:c_8373</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Trigo</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8373</AbbreviatedIRI>
+        <Literal xml:lang="en">Wheat</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8373</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/e2369eaf443fc28d5b546a7e23c7ea6c</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8376</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Soro do leite</Literal>
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+    <AnnotationAssertion>
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+        <AbbreviatedIRI>agrovoc:c_8376</AbbreviatedIRI>
+        <Literal xml:lang="en">Whey</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_8376</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/9cd7fc78880bea64f045a006720f4c6d</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8421</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Madeira</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8421</AbbreviatedIRI>
+        <Literal xml:lang="en">wood</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_8421</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/d471f65a3e7768cb32d51debc22d9f60</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_861</AbbreviatedIRI>
+        <Literal xml:lang="en">Beef</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_861</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne bovina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_861</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne de bovino</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_861</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/69c63ae967a1055e2b279791e2feedc0</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_861</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Carne bovina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8998</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Berinjela</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_8998</AbbreviatedIRI>
+        <Literal xml:lang="en">Eggplant</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_8998</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/561a32dd09056431c368b5ad71e64432</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9410</AbbreviatedIRI>
+        <Literal xml:lang="en">Brazil nut</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9410</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Castanha do Brasil</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_9410</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Castanha do Pará</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_9410</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/d8d964d1d7dbc6aab32e0ea56331e525</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_9410</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Castanha do Brasil</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9640</AbbreviatedIRI>
+        <Literal xml:lang="en">Carrot</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9640</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cenoura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_9640</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/1a868182fce986fe0701a2d5c593acbf</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9649</AbbreviatedIRI>
+        <Literal xml:lang="en">Cassava</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9649</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Mandioca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_9649</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Aipim</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_9649</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Macaxeira</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_9649</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">raiz de mandioca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_9649</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/373b74610542263335c865a6e39ee9d5</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AbbreviatedIRI>agrovoc:c_9649</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Mandioca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9813</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Cebolinha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_9813</AbbreviatedIRI>
+        <Literal xml:lang="en">Chives</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrovoc:c_9813</AbbreviatedIRI>
+        <Literal xml:lang="en">Green onion</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrovoc:c_9813</AbbreviatedIRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/c0304fb7306cc510b82e5a98d7db7618</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_995ecefb</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Planta útil</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrovoc:c_995ecefb</AbbreviatedIRI>
+        <Literal xml:lang="en">Useful plant</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/BCO_0000087</IRI>
+        <Literal xml:lang="en">A shortcut relation from an organsimal entity to a taxon.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/BCO_0000087</IRI>
+        <Literal xml:lang="pt-br">Uma relação abreviada de uma entidade organismal para um táxon.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/BCO_0000087</IRI>
+        <Literal xml:lang="en">member of taxon</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/BCO_0000087</IRI>
+        <Literal xml:lang="pt-br">membro do táxon</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001000</IRI>
+        <Literal xml:lang="en">A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001000</IRI>
+        <Literal xml:lang="pt-br">Uma relação entre duas entidades materiais distintas, a nova entidade e a entidade antiga, na qual a nova entidade começa a existir quando a entidade antiga deixa de existir, e a nova entidade herda a porção significativa da matéria da entidade antiga.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001000</IRI>
+        <Literal xml:lang="pt-br">derivado de</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001000</IRI>
+        <Literal xml:lang="en">derives from</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001001</IRI>
+        <Literal xml:lang="en">A relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001001</IRI>
+        <Literal xml:lang="pt-br">Uma relação entre duas entidades materiais distintas, a entidade antiga e a nova entidade, na qual a nova entidade começa a existir quando a entidade antiga deixa de existir, e a nova entidade herda a porção significativa da matéria da entidade antiga.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001001</IRI>
+        <Literal xml:lang="pt-br">deriva em</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0001001</IRI>
+        <Literal xml:lang="en">derives into</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003000</IRI>
+        <Literal xml:lang="en">A produces B if some process that occurs_in A has_output B, where A and B are material entities.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003000</IRI>
+        <Literal xml:lang="pt-br">A produz B se algum processo que ocorre em A tem B como resultado, onde A e B são entidades materiais.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003000</IRI>
+        <Literal xml:lang="en">produces</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003000</IRI>
+        <Literal xml:lang="pt-br">produz</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003001</IRI>
+        <Literal xml:lang="en">A produced_by B iff some process that occurs_in B has_output A.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003001</IRI>
+        <Literal xml:lang="pt-br">A é produzido por B se, e somente se, algum processo que ocorre em B tem A como resultado.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003001</IRI>
+        <Literal xml:lang="en">produced by</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>http://purl.obolibrary.org/obo/RO_0003001</IRI>
+        <Literal xml:lang="pt-br">produzido por</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
+        <IRI>http://www.w3.org/2004/02/skos/mapping</IRI>
+        <Literal>This vocabulary allows you to express information about how statements made using concepts from some conceptual scheme may be transformed into statements with concepts from a different scheme.  So for example it can be used for automated query transformation.  Or It could be used to create a virtual subject index for a collection in terms of an alternative classification system.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:seeAlso"/>
+        <IRI>http://www.w3.org/2004/02/skos/mapping</IRI>
+        <IRI>http://www.w3.org/2001/sw/Europe/reports/thes/8.4/</IRI>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:altLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">The range of skos:altLabel is the class of RDF plain literals.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:altLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">skos:prefLabel, skos:altLabel and skos:hiddenLabel are pairwise disjoint properties.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
+        <AbbreviatedIRI>skos:altLabel</AbbreviatedIRI>
+        <IRI>http://www.w3.org/2004/02/skos/core</IRI>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>skos:altLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">alternative label</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:broadMatch</AbbreviatedIRI>
+        <Literal xml:lang="en">If &apos;concept A has-broad-match concept B&apos; then the set of resources properly indexed against concept A is a subset of the set of resources properly indexed against concept B.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>skos:broadMatch</AbbreviatedIRI>
+        <Literal xml:lang="en">skos:broadMatch</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:exactMatch</AbbreviatedIRI>
+        <Literal xml:lang="en">If two concepts are an &apos;exact-match&apos; then the set of resources properly indexed against the first concept is identical to the set of resources properly indexed against the second.  Therefore the two concepts may be interchanged in queries and subject-based indexes.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>skos:exactMatch</AbbreviatedIRI>
+        <Literal xml:lang="en">skos:exactMatch</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:hiddenLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">The range of skos:hiddenLabel is the class of RDF plain literals.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:hiddenLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">skos:prefLabel, skos:altLabel and skos:hiddenLabel are pairwise disjoint properties.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
+        <AbbreviatedIRI>skos:hiddenLabel</AbbreviatedIRI>
+        <IRI>http://www.w3.org/2004/02/skos/core</IRI>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>skos:hiddenLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">hidden label</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:narrowMatch</AbbreviatedIRI>
+        <Literal xml:lang="en">If &apos;concept A has-narrow-match concept B&apos; then the set of resources properly indexed against concept A is a superset of the set of resources properly indexed against concept B.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>skos:narrowMatch</AbbreviatedIRI>
+        <Literal xml:lang="en">skos:narrowMatch</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:prefLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">A resource has no more than one value of skos:prefLabel per language tag, and no more than one value of skos:prefLabel without language tag.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:prefLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">The range of skos:prefLabel is the class of RDF plain literals.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <AbbreviatedIRI>skos:prefLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">skos:prefLabel, skos:altLabel and skos:hiddenLabel are pairwise
+      disjoint properties.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:isDefinedBy"/>
+        <AbbreviatedIRI>skos:prefLabel</AbbreviatedIRI>
+        <IRI>http://www.w3.org/2004/02/skos/core</IRI>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>skos:prefLabel</AbbreviatedIRI>
+        <Literal xml:lang="en">preferred label</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://agrovoc.fao.org/browse/agrovoc/en/page/c_3568</IRI>
+        <Literal xml:lang="en">Culinary herbs</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://agrovoc.fao.org/browse/agrovoc/en/page/c_3568</IRI>
+        <Literal xml:lang="pt-br">Planta aromática para culinária</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://agrovoc.fao.org/browse/agrovoc/en/page/c_7501</IRI>
+        <Literal xml:lang="pt-br">Cana-de-açúcar</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://agrovoc.fao.org/browse/agrovoc/en/page/c_7501</IRI>
+        <Literal xml:lang="en">Sugar cane</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>https://agrovoc.fao.org/browse/agrovoc/en/page/c_7501</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/fe91bcfb4bc023da0ecfabf5030f92db</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>sdo:Açucar_Refinado_Amorfo</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Açúcar refinado amorfo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrotermos:a110c0bb4ca441a61349d22192c6c583</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Piaçava</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrotermos:aaff761df6b25c60c9454df207578876</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Amêndoa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrotermos:b675818cfcefea83a15d92ef70a73177</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">Noz</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <AbbreviatedIRI>agrotermos:b675818cfcefea83a15d92ef70a73177</AbbreviatedIRI>
+        <Literal xml:lang="en">Walnuts</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrotermos:b675818cfcefea83a15d92ef70a73177</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">noz inglesa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AbbreviatedIRI>agrotermos:b675818cfcefea83a15d92ef70a73177</AbbreviatedIRI>
+        <Literal xml:lang="pt-br">noz persa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>agrotermos:b675818cfcefea83a15d92ef70a73177</AbbreviatedIRI>
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+        <Literal xml:lang="en">Edible nut</Literal>
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+        <Literal xml:lang="pt-br">Cajá</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
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+        <Literal xml:lang="pt-br">Maracujá</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://sistemas.sede.embrapa.br/agrotermos/resources/http://aims.fao.org/aos/agrovoc/c_13127</IRI>
+        <Literal xml:lang="en">Passion fruit</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>https://sistemas.sede.embrapa.br/agrotermos/resources/http://aims.fao.org/aos/agrovoc/c_13127</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/9e2501934d067d71bb1c5850722a73d1</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Acai-verdadeiro</IRI>
+        <Literal xml:lang="pt-br">Açaí-verdadeiro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Air-Chilled_chicken</IRI>
+        <Literal xml:lang="pt-br">Frango resfriado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/source"/>
+        <IRI>Algodao_em_caroco</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemasweb.agricultura.gov.br/sislegis/action/detalhaAto.do?method=visualizarAtoPortalMapa&amp;chave=1830175803#:~:text=3.1.-,Algod%C3%A3o%20em%20caro%C3%A7o%3A%20%C3%A9%20o%20produto%20maduro%20e%20fisiologicamente%20desenvolvido,3.2.</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>Algodao_em_caroco</IRI>
+        <Literal xml:lang="pt-br">Produto maduro e fisiologicamente desenvolvido, oriundo do algodoeiro, que apresenta suas fibras aderidas ao caroço e que ainda não foi beneficiado.</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Algodao_em_caroco</IRI>
+        <Literal xml:lang="pt-br">Algodão em caroço</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Animal_by_product</IRI>
+        <Literal xml:lang="en">Animal by-product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Animal_by_product</IRI>
+        <Literal xml:lang="pt-br">Subproduto de origem animal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Aquaculture_product</IRI>
+        <Literal xml:lang="en">Aquaculture product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Aquaculture_product</IRI>
+        <Literal xml:lang="pt-br">Produto da aquicultura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <Literal xml:lang="en">Araucaria</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Araucaria</IRI>
+        <Literal xml:lang="pt-br">Araucária</Literal>
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+        <Literal xml:lang="en">In the livestock industry, particularly in Brazil, &quot;Boi Gordo&quot; refers to cattle that have been fattened to an optimal weight and condition for slaughter. These animals are typically well-fed and managed to achieve a high level of muscle and fat, making them ideal for meat production. The term signifies the final stage of cattle before they are sent to slaughterhouses, where their market value is assessed based on their weight and overall condition. &quot;Boi Gordo&quot; is a key term in the beef production industry, indicating readiness for processing into meat products.</Literal>
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+        <Literal xml:lang="pt-br">Boi gordo</Literal>
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+        <IRI>Boi_gordo</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://dbpedia.org/resource/Fed_cattle</Literal>
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+        <IRI>Boi_magro</IRI>
+        <Literal xml:lang="en">In the livestock industry, &quot;Boi Magro&quot; refers to cattle that are lean and have not yet reached the optimal weight and condition for slaughter. These animals require additional feeding and management to gain sufficient muscle and fat.</Literal>
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+    <AnnotationAssertion>
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+        <IRI>Boi_magro</IRI>
+        <Literal xml:lang="pt-br">No setor pecuário, &quot;Boi Magro&quot; refere-se ao gado que é magro e ainda não atingiu o peso e condição ótimos para o abate. Esses animais necessitam de alimentação e manejo adicionais para ganhar músculo e gordura suficientes.</Literal>
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+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
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+        <Literal xml:lang="pt-br">Boi magro</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Buriti</IRI>
+        <Literal xml:lang="pt-br">Buriti</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Buriti</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/87574e3e9216e89429f8af597b016479</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:relatedMatch"/>
+        <IRI>Buriti</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://aims.fao.org/aos/agrovoc/c_4661</Literal>
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+        <IRI>Buritizeiro</IRI>
+        <Literal xml:lang="pt-br">Buritizeiro</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>By-product</IRI>
+        <Literal xml:lang="en">By-product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>By-product</IRI>
+        <Literal xml:lang="pt-br">Subproduto</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>By-product</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://aims.fao.org/aos/agrovoc/c_1172</Literal>
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+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Canjica_de_milho</IRI>
+        <Literal xml:lang="pt-br">Canjica de milho</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Carne_ovina</IRI>
+        <Literal xml:lang="pt-br">Carne ovina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Cera_de_carnauba</IRI>
+        <Literal xml:lang="en">Carnauba wax</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Cera_de_carnauba</IRI>
+        <Literal xml:lang="pt-br">Cera de carnaúba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Chili_pepper</IRI>
+        <Literal xml:lang="en">Chili pepper</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Chili_pepper</IRI>
+        <Literal xml:lang="pt-br">Pimenta</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Citrus_maxima</IRI>
+        <Literal xml:lang="lat">Citrus maxima</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>Citrus_maxima</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://www.gbif.org/species/3190160</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Citrus_reticulata</IRI>
+        <Literal xml:lang="lat">Citrus reticulata</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>Citrus_reticulata</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://www.gbif.org/species/3190172</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Coco_babacu</IRI>
+        <Literal xml:lang="pt-br">Coco de babaçu</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Cocoa</IRI>
+        <Literal xml:lang="pt-br">Cacau</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Cocoa</IRI>
+        <Literal xml:lang="en">cocoa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
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+        <IRI>Cocoa</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/b049f571bb7165ea6fb5d377e5dfdfd2</Literal>
+    </AnnotationAssertion>
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+        <IRI>Coconut</IRI>
+        <Literal xml:lang="pt-br">Coco</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Coconut</IRI>
+        <Literal xml:lang="en">Coconut</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
+        <IRI>Corn_flakes</IRI>
+        <Literal xml:lang="en">Corn flakes are made from corn grains that are cooked and then flattened and toasted into thin, crispy flakes. They are widely consumed as breakfast cereals, usually with milk or yogurt, and are also used in some culinary recipes, such as breading or desserts.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
+        <IRI>Corn_flakes</IRI>
+        <Literal xml:lang="pt-br">Flocos de milho, conhecidos popularmente como &quot;cornflakes&quot;, são feitos a partir de grãos de milho cozidos e depois esmagados e tostados em flocos finos e crocantes.São amplamente consumidos como cereais matinais, geralmente acompanhados de leite ou iogurte, e também são utilizados em algumas receitas culinárias, como empanados ou sobremesas.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Corn_flakes</IRI>
+        <Literal xml:lang="en">Corn flakes</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Corn_flakes</IRI>
+        <Literal xml:lang="pt-br">Flocos de milho</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Cow_cheese</IRI>
+        <Literal xml:lang="en">Cow cheese</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Cow_cheese</IRI>
+        <Literal xml:lang="pt-br">Queijo de vaca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Domestic_chicken</IRI>
+        <Literal xml:lang="en">Domestic chicken</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Domestic_chicken</IRI>
+        <Literal xml:lang="pt-br">Galinha doméstica</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Farinha_de_mandioca</IRI>
+        <Literal xml:lang="pt-br">Farinha de mandioca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>Farinha_de_mandioca</IRI>
+        <Literal xml:lang="en">Cassava flour</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Farinha_de_mandioca_seca</IRI>
+        <Literal xml:lang="pt-br">Farinha de mandioca seca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Farinha_de_mandioca_seca_fina</IRI>
+        <Literal xml:lang="pt-br">Farinha de mandioca seca fina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>Farinha_de_mandioca_seca_fina</IRI>
+        <Literal xml:lang="pt-br">Mandioca seca fina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <IRI>Farinha_de_mandioca_seca_fina</IRI>
+        <Literal xml:lang="pt-br">Farinha de mandioca seca fina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Farinha_de_mandioca_seca_grossa</IRI>
+        <Literal xml:lang="pt-br">Farinha de mandioca seca grossa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>Farinha_de_mandioca_seca_grossa</IRI>
+        <Literal xml:lang="pt-br">Mandioca seca grossa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <IRI>Farinha_de_mandioca_seca_grossa</IRI>
+        <Literal xml:lang="pt-br">Farinha de mandioca seca grossa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Fava_de_anta</IRI>
+        <Literal xml:lang="pt-br">Fava-de-anta</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>Fava_de_anta</IRI>
+        <Literal xml:lang="pt-br">fava-d&apos;anta</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Fibra</IRI>
+        <Literal xml:lang="pt-br">Fibra</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Fibra</IRI>
+        <Literal xml:lang="en">Vegetal fiber</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Fibra</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://aims.fao.org/aos/agrovoc/c_2879</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Fibra</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/aaf228df552d57d8f74534022b863a4f</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Fibra_de_carnauba</IRI>
+        <Literal xml:lang="pt-br">Fibra de carnaúba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Flocos</IRI>
+        <Literal xml:lang="en">Flakes</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Flocos</IRI>
+        <Literal xml:lang="pt-br">Flocos</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Frozen_chicken</IRI>
+        <Literal xml:lang="pt-br">Frango congelado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Goat_cheese</IRI>
+        <Literal xml:lang="en">Goat cheese</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Goat_cheese</IRI>
+        <Literal xml:lang="pt-br">Queijo de cabra</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Graviola</IRI>
+        <Literal xml:lang="pt-br">Graviola</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Graviola</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/cd4ad51e3ef278dffda7b240530a6cf7</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Guarana</IRI>
+        <Literal xml:lang="pt-br">Guaraná</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Guarana</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/da85d12cdbbedf2418030018c66cb0b0</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Jaraqui</IRI>
+        <Literal xml:lang="pt-br">Jaraqui</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Licurizeiro</IRI>
+        <Literal xml:lang="pt-br">Licurizeiro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>Licurizeiro</IRI>
+        <Literal xml:lang="pt-br">Coqueiro-cabeçudo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Licurizeiro</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/c9ed4cf096ed94bc9c318008ffadbdce</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <IRI>Licurizeiro</IRI>
+        <Literal xml:lang="pt-br">Licurizeiro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Mamona_em_baga</IRI>
+        <Literal xml:lang="pt-br">Mamona em baga</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/source"/>
+        <IRI>Massa_de_mandioca</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://periodicos.ufms.br/index.php/EIGEDIN/article/view/7327</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Massa_de_mandioca</IRI>
+        <Literal xml:lang="pt-br">Massa de mandioca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Maxixe</IRI>
+        <Literal xml:lang="pt-br">Maxixe</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Maxixe</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/2ba40885c990c681fbb1872fc59a5a16</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Murumuru</IRI>
+        <Literal xml:lang="pt-br">Murumuru</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Murumuzeiro</IRI>
+        <Literal xml:lang="pt-br">Palmeira murumuru</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>OWLClass_59217d1a_950e_4f2d_b80c_695e0fe9100dalm</IRI>
+        <Literal xml:lang="en">Hive product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>OWLClass_59217d1a_950e_4f2d_b80c_695e0fe9100dalm</IRI>
+        <Literal xml:lang="pt-br">Produto da apicultura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>OWLClass_76cbdf78_9da4_43ce_b015_50ee8259fab6alm</IRI>
+        <Literal xml:lang="en">Livestock product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>OWLClass_76cbdf78_9da4_43ce_b015_50ee8259fab6alm</IRI>
+        <Literal xml:lang="pt-br">Produto pecuário</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>OWLClass_a7c4f0d2_6654_4dc6_ae34_97ce99b35adealm</IRI>
+        <Literal xml:lang="pt-br">Produto da vida selvagem</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>OWLClass_a7c4f0d2_6654_4dc6_ae34_97ce99b35adealm</IRI>
+        <Literal xml:lang="en">Wildlife product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Oleo_de_buriti</IRI>
+        <Literal xml:lang="pt-br">Óleo de buriti</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Oleo_de_copaiba</IRI>
+        <Literal xml:lang="pt-br">Óleo de copaíba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Oleo_de_copaiba</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://aims.fao.org/aos/agrovoc/c_10091</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <IRI>Oleo_de_copaiba</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/29fb6a538d8ed7225c2787a2118752aa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Oleo_de_murumuru</IRI>
+        <Literal xml:lang="en">Murumuru oil</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Oleo_de_murumuru</IRI>
+        <Literal xml:lang="pt-br">Óleo de murumuru</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Oleo_de_pequi</IRI>
+        <Literal xml:lang="pt-br">Óleo de pequi</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Organism</IRI>
+        <Literal xml:lang="en">Organism</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Organism</IRI>
+        <Literal xml:lang="pt-br">Organismo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>Organism</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/OBI_0100026</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Ovo_de_galinha</IRI>
+        <Literal xml:lang="pt-br">Ovo de galinha</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Pepper</IRI>
+        <Literal xml:lang="en">Pepper</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Pepper</IRI>
+        <Literal xml:lang="pt-br">Pimenta do Reino</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>Pepper</IRI>
+        <Literal xml:lang="en">Black pepper</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Pinus</IRI>
+        <Literal xml:lang="en">Pinus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Pinus</IRI>
+        <Literal xml:lang="pt-br">Pinus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Plant_by-product</IRI>
+        <Literal xml:lang="en">Plant by-product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Plant_by-product</IRI>
+        <Literal xml:lang="pt-br">Subproduto de origem vegetal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Planta_produtora_de_celulose</IRI>
+        <Literal xml:lang="en">Cellulose-producing plant</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Planta_produtora_de_celulose</IRI>
+        <Literal xml:lang="pt-br">Planta produtora de celulose</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Po_cerifero</IRI>
+        <Literal xml:lang="pt-br">Pó cerífero</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Po_cerifero_de_carnauba</IRI>
+        <Literal xml:lang="pt-br">Pó cerífero de carnaúba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Polpa_de_abacaxi</IRI>
+        <Literal xml:lang="en">Polpa de abacaxi</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Polpa_de_acai</IRI>
+        <Literal xml:lang="en">Assai pulp</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Polpa_de_acai</IRI>
+        <Literal xml:lang="pt-br">Polpa de açaí</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Polpa_de_acerola</IRI>
+        <Literal xml:lang="pt-br">Polpa de acerola</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Polpa_de_tamarindo</IRI>
+        <Literal xml:lang="pt-br">Polpa de tamarindo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Polvilho</IRI>
+        <Literal xml:lang="pt-br">Polvilho</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>Polvilho</IRI>
+        <Literal xml:lang="pt-br">Fécula de mandioca</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <IRI>Polvilho</IRI>
+        <Literal xml:lang="pt-br">Polvilho</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Poultry_product</IRI>
+        <Literal xml:lang="en">Poultry product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Poultry_product</IRI>
+        <Literal xml:lang="pt-br">Produto da avicultura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Processed_animal_product</IRI>
+        <Literal xml:lang="en">Processed animal product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Processed_animal_product</IRI>
+        <Literal xml:lang="pt-br">Produto de origem animal processado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Product_type</IRI>
+        <Literal xml:lang="en">Product type</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Product_type</IRI>
+        <Literal xml:lang="pt-br">Tipo de produto</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Raw_animal_product</IRI>
+        <Literal xml:lang="pt-br">Produto de origem animal in natura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Raw_animal_product</IRI>
+        <Literal xml:lang="en">Raw animal product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Raw_plant_product</IRI>
+        <Literal xml:lang="pt-br">Produto de origem vegetal in natura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Raw_plant_product</IRI>
+        <Literal xml:lang="en">Raw plant product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Raw_product</IRI>
+        <Literal xml:lang="pt-br">Produto in natura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Raw_product</IRI>
+        <Literal xml:lang="en">Raw product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:relatedMatch"/>
+        <IRI>Raw_product</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://aims.fao.org/aos/agrovoc/c_24887</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
+        <IRI>Rice_flakes</IRI>
+        <Literal xml:lang="pt-br">Flocos de arroz são grãos de arroz que foram processados para se tornarem finos e achatados. Este processo envolve cozinhar os grãos, desidratá-los e prensá-los, resultando em flocos leves e crocantes. Eles são comumente usados em cereais matinais, barras de cereais e podem ser consumidos com leite, iogurte ou utilizados em receitas como bolos e biscoitos.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
+        <IRI>Rice_flakes</IRI>
+        <Literal xml:lang="en">Rice flakes are grains of rice that have been processed to become thin and flattened. This process involves cooking the grains, dehydrating them, and pressing them, resulting in light and crispy flakes. They are commonly used in breakfast cereals, cereal bars, and can be eaten with milk, yogurt, or used in recipes like cakes and cookies.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Rice_flakes</IRI>
+        <Literal xml:lang="pt-br">Flocos de arrroz</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Rice_flakes</IRI>
+        <Literal xml:lang="en">Rice flakes</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Sericulture_product</IRI>
+        <Literal xml:lang="pt-br">Produto da sericicultura</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Sericulture_product</IRI>
+        <Literal xml:lang="en">Sericulture product</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:relatedMatch"/>
+        <IRI>Sericulture_product</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">http://aims.fao.org/aos/agrovoc/c_6981</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Seringueira</IRI>
+        <Literal xml:lang="pt-br">Seringueira</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Seringueira</IRI>
+        <Literal xml:lang="en">Sharinga tree</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Soybean_meal</IRI>
+        <Literal xml:lang="pt-br">Farelo de soja</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Soybean_meal</IRI>
+        <Literal xml:lang="en">Soybean meal</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Sucroenergetico</IRI>
+        <Literal xml:lang="pt-br">Sucroenergético</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Sugar_plant</IRI>
+        <Literal xml:lang="pt-br">Planta produtora de açúcar</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Sugar_plant</IRI>
+        <Literal xml:lang="en">Sugar-producing plant</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Tamarindo</IRI>
+        <Literal xml:lang="en">Tamarind</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Tamarindo</IRI>
+        <Literal xml:lang="pt-br">Tamarindo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:relatedMatch"/>
+        <IRI>Tamarindo</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/5bf4ec8db1d13c79edfae0699ce662fe</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Tomato_extract</IRI>
+        <Literal xml:lang="pt-br">Extrato de tomate</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Tomato_extract</IRI>
+        <Literal xml:lang="en">Tomato extract</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>Triticum</IRI>
+        <Literal xml:lang="lat">Triticum</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <IRI>Triticum</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://www.gbif.org/species/2706388</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/source"/>
+        <IRI>algodaoPluma</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemasweb.agricultura.gov.br/sislegis/action/detalhaAto.do?method=visualizarAtoPortalMapa&amp;chave=1830175803#:~:text=3.1.-,Algod%C3%A3o%20em%20caro%C3%A7o%3A%20%C3%A9%20o%20produto%20maduro%20e%20fisiologicamente%20desenvolvido,3.2.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>algodaoPluma</IRI>
+        <Literal xml:lang="pt-br">Produto resultante da operação de beneficiamento do algodão em caroço.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>algodaoPluma</IRI>
+        <Literal xml:lang="pt-br">Algodão em pluma</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>amendoaandiroba</IRI>
+        <Literal xml:lang="pt-br">Amêndoa de andiroba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:broadMatch"/>
+        <IRI>amendoaandiroba</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/8d11f918a65e21f7695af788b28001d5</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>amendoabaru</IRI>
+        <Literal xml:lang="pt-br">Amêndoa de cumbaru</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>amendoabaru</IRI>
+        <Literal xml:lang="pt-br">Amêndoa de baru</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>amendoacacau</IRI>
+        <Literal xml:lang="pt-br">Amêndoa de cacau</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>amendoacacau</IRI>
+        <Literal xml:lang="en">Cocoa almond</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:broadMatch"/>
+        <IRI>amendoacacau</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/b049f571bb7165ea6fb5d377e5dfdfd2</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>amendoadeouricuri</IRI>
+        <Literal xml:lang="pt-br">Amêndoa de licuri</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>amendoadeouricuri</IRI>
+        <Literal xml:lang="pt-br">Licuri</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>amendoadeouricuri</IRI>
+        <Literal xml:lang="pt-br">Ouricuri</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>amendoamacauba</IRI>
+        <Literal xml:lang="pt-br">Amêndoa de macaúba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>amendoamacauba</IRI>
+        <Literal xml:lang="pt-br">Macaúba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <IRI>amendoamacauba</IRI>
+        <Literal xml:lang="pt-br">Amêndoa de macaúba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>azeitebabacu</IRI>
+        <Literal xml:lang="pt-br">Azeite de babaçu</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>azeitebabacu</IRI>
+        <Literal xml:lang="pt-br">Óleo de babaçu</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <IRI>azeitebabacu</IRI>
+        <Literal xml:lang="pt-br">Azeite de babaçu</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>azeitemacauba</IRI>
+        <Literal xml:lang="pt-br">Azeite de macaúba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:broadMatch"/>
+        <IRI>azeitemacauba</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/513d52ec57a549910bf9ced35be817a8</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>bebibalactea</IRI>
+        <Literal xml:lang="pt-br">Bebida láctea</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>bebibalactea</IRI>
+        <Literal xml:lang="en">Dairy drink</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>cheiroverde</IRI>
+        <Literal xml:lang="pt-br">Cheiro verde</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>etanolanidro</IRI>
+        <Literal xml:lang="pt-br">Etanol anidro</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>etanolhidratado</IRI>
+        <Literal xml:lang="pt-br">Etanol hidratado</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>fitweed</IRI>
+        <Literal xml:lang="pt-br">Chicória-do-Pará</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>fitweed</IRI>
+        <Literal xml:lang="en">Fitweed</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>fitweed</IRI>
+        <Literal xml:lang="pt-br">Coentro-bravo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>has_ingredient</IRI>
+        <Literal xml:lang="pt-br">Esta propriedade indica que um produto contém um ou mais ingredientes específicos.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>has_ingredient</IRI>
+        <Literal xml:lang="en">This property indicates that a product contains one or more specific ingredients.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>has_ingredient</IRI>
+        <Literal xml:lang="pt-br">contém ingrediente</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>has_ingredient</IRI>
+        <Literal xml:lang="en">has ingredient</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>is_a_hybrid_of</IRI>
+        <Literal xml:lang="pt-br">Esta propriedade indica que uma dada espécie é um híbrido de outras duas espécies.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>is_a_hybrid_of</IRI>
+        <Literal xml:lang="en">This property indicates that a given species is a hybrid of two other species.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>is_a_hybrid_of</IRI>
+        <Literal xml:lang="en">is a hybrid of</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>is_a_hybrid_of</IRI>
+        <Literal xml:lang="pt">é um híbrido de</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>is_ingredient_of</IRI>
+        <Literal xml:lang="pt-br">Esta propriedade indica que algo é um ingrediente de um produto específico.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>is_ingredient_of</IRI>
+        <Literal xml:lang="en">This property indicates that something is an ingredient of a specific product.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>is_ingredient_of</IRI>
+        <Literal xml:lang="en">is ingredient of</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>is_ingredient_of</IRI>
+        <Literal xml:lang="pt-br">é ingrediente de</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpaburiti</IRI>
+        <Literal xml:lang="pt-br">Polpa de buriti</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpacacau</IRI>
+        <Literal xml:lang="pt-br">Polpa de cacau</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpacaja</IRI>
+        <Literal xml:lang="pt-br">Polpa de cajá</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpacaju</IRI>
+        <Literal xml:lang="pt-br">Polpa de caju</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpaceriguela</IRI>
+        <Literal xml:lang="pt-br">Polpa de ceriguela</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <IRI>polpaceriguela</IRI>
+        <Literal xml:lang="pt-br">Polpa de seriguela</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <IRI>polpaceriguela</IRI>
+        <Literal xml:lang="pt-br">Polpa de ceriguela</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpacupuacu</IRI>
+        <Literal xml:lang="pt-br">Polpa de cupuaçu</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="skos:broadMatch"/>
+        <IRI>polpacupuacu</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://sistemas.sede.embrapa.br/agrotermos/resources/93091ce029083f6c99e904493ae41517</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpagoiaba</IRI>
+        <Literal xml:lang="pt-br">Polpa de goiaba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpagraviola</IRI>
+        <Literal xml:lang="pt-br">Polpa de graviola</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpajenipapo</IRI>
+        <Literal xml:lang="pt-br">Polpa de jenipapo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpamanga</IRI>
+        <Literal xml:lang="pt-br">Polpa de manga</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpamangaba</IRI>
+        <Literal xml:lang="pt-br">Polpa de mangaba</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpamaracuja</IRI>
+        <Literal xml:lang="pt-br">Polpa de maracujá</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>polpaumbu</IRI>
+        <Literal xml:lang="pt-br">Polpa de umbu</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>residue_of</IRI>
+        <Literal xml:lang="pt-br">A propriedade &quot;residue_of&quot; liga um subproduto ao produto cuja produção resulta nesse subproduto. Essa relação indica que o subproduto é um resíduo gerado durante o processo de produção do produto principal.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:comment"/>
+        <IRI>residue_of</IRI>
+        <Literal xml:lang="en">The &quot;residue_of&quot; property links a by-product to the product whose production results in this by-product. This relationship indicates that the by-product is a residue generated during the manufacturing process of the main product.</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>residue_of</IRI>
+        <Literal xml:lang="en">residue of</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>residue_of</IRI>
+        <Literal xml:lang="pt-br">resíduo da produção de</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>suinoVivo</IRI>
+        <Literal xml:lang="pt-br">Suíno vivo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>trigomelhorador</IRI>
+        <Literal xml:lang="pt-br">Trigo melhorador</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>vacaGorda</IRI>
+        <Literal xml:lang="pt-br">Vaca gorda</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1</IRI>
+        <Literal xml:lang="lat">Animalia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1069</IRI>
+        <Literal xml:lang="lat">Osteoglossiformes</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/10779983</IRI>
+        <Literal xml:lang="lat">Dipteryx odorata</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/10792217</IRI>
+        <Literal xml:lang="lat">Ilex</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1169</IRI>
+        <Literal xml:lang="lat">Asparagales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1176</IRI>
+        <Literal xml:lang="lat">Solanales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1334757</IRI>
+        <Literal xml:lang="lat">Apis</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1341976</IRI>
+        <Literal xml:lang="lat">Apis mellifera</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1351</IRI>
+        <Literal xml:lang="lat">Apiales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1353</IRI>
+        <Literal xml:lang="lat">Ericales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1354</IRI>
+        <Literal xml:lang="lat">Fagales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1369</IRI>
+        <Literal xml:lang="lat">Poales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1370</IRI>
+        <Literal xml:lang="lat">Fabales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1414</IRI>
+        <Literal xml:lang="lat">Malpighiales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1457</IRI>
+        <Literal xml:lang="lat">Hymenoptera</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1868660</IRI>
+        <Literal xml:lang="lat">Bombyx</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/1868664</IRI>
+        <Literal xml:lang="lat">Bombyx mori</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/194</IRI>
+        <Literal xml:lang="lat">Pinopsida</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/196</IRI>
+        <Literal xml:lang="lat">Liliopsida</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/212</IRI>
+        <Literal xml:lang="lat">Aves</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/216</IRI>
+        <Literal xml:lang="lat">Insecta</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/220</IRI>
+        <Literal xml:lang="lat">Magnoliopsida</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2352125</IRI>
+        <Literal xml:lang="lat">Semaprochilodus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2352126</IRI>
+        <Literal xml:lang="lat">Semaprochilodus insignis</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2352134</IRI>
+        <Literal xml:lang="lat">Semaprochilodus taeniurus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2352148</IRI>
+        <Literal xml:lang="lat">Prochilodus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2352151</IRI>
+        <Literal xml:lang="lat">Prochilodus brevis</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2352154</IRI>
+        <Literal xml:lang="lat">Prochilodus lineatus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2352177</IRI>
+        <Literal xml:lang="lat">Prochilodus argenteus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2353218</IRI>
+        <Literal xml:lang="lat">Piaractus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2353219</IRI>
+        <Literal xml:lang="lat">Piaractus mesopotamicus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2370578</IRI>
+        <Literal xml:lang="lat">Tilapia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2378</IRI>
+        <Literal xml:lang="lat">Passifloraceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2389</IRI>
+        <Literal xml:lang="lat">Convolvulaceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2396</IRI>
+        <Literal xml:lang="lat">Rutaceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2397</IRI>
+        <Literal xml:lang="lat">Meliaceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2398</IRI>
+        <Literal xml:lang="lat">Anacardiaceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2402332</IRI>
+        <Literal xml:lang="lat">Arapaima</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2441017</IRI>
+        <Literal xml:lang="lat">Bos</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2441022</IRI>
+        <Literal xml:lang="lat">Bos taurus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2441047</IRI>
+        <Literal xml:lang="lat">Capra</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2441056</IRI>
+        <Literal xml:lang="lat">Capra hircus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2441110</IRI>
+        <Literal xml:lang="lat">Ovis aries</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2441213</IRI>
+        <Literal xml:lang="lat">Sus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2473720</IRI>
+        <Literal xml:lang="lat">Gallus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2499</IRI>
+        <Literal xml:lang="lat">Juglandaceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2684241</IRI>
+        <Literal xml:lang="lat">Pinus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2684910</IRI>
+        <Literal xml:lang="lat">Araucaria</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2684940</IRI>
+        <Literal xml:lang="lat">Araucaria angustifolia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2699430</IRI>
+        <Literal xml:lang="lat">Ananas</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2703201</IRI>
+        <Literal xml:lang="lat">Cenchrus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/description"/>
+        <IRI>https://www.gbif.org/species/2703325</IRI>
+        <Literal xml:lang="en">A Man-made cereal grass crop obtained from hybridization of wheat (Triticum spp) with rye (Secale cereale).</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty IRI="http://purl.org/dc/elements/1.1/source"/>
+        <IRI>https://www.gbif.org/species/2703325</IRI>
+        <Literal datatypeIRI="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.1007/978-0-387-72297-9_9</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2703325</IRI>
+        <Literal xml:lang="lat">×Triticosecale</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2703455</IRI>
+        <Literal xml:lang="lat">Oryza</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2703459</IRI>
+        <Literal xml:lang="lat">Oryza sativa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2703464</IRI>
+        <Literal xml:lang="lat">Oryza glaberrima</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2703910</IRI>
+        <Literal xml:lang="lat">Saccharum</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705049</IRI>
+        <Literal xml:lang="lat">Zea</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705180</IRI>
+        <Literal xml:lang="lat">Sorghum</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705181</IRI>
+        <Literal xml:lang="lat">Sorghum bicolor</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705282</IRI>
+        <Literal xml:lang="lat">Avena</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705290</IRI>
+        <Literal xml:lang="lat">Avena sativa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705292</IRI>
+        <Literal xml:lang="lat">Avena byzantina</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705965</IRI>
+        <Literal xml:lang="lat">Secale</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2705966</IRI>
+        <Literal xml:lang="lat">Secale cereale</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/2706050</IRI>
+        <Literal xml:lang="lat">Hordeum</Literal>
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+        <IRI>https://www.gbif.org/species/8230360</IRI>
+        <Literal xml:lang="lat">Spondias tuberosa</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/8257011</IRI>
+        <Literal xml:lang="lat">Citrullus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/8413640</IRI>
+        <Literal xml:lang="lat">Mauritia</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/8522</IRI>
+        <Literal xml:lang="lat">Cichlidae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/8717303</IRI>
+        <Literal xml:lang="lat">Cucurbita pepo</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/8798</IRI>
+        <Literal xml:lang="lat">Rubiaceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/8832</IRI>
+        <Literal xml:lang="lat">Bombycidae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9188216</IRI>
+        <Literal xml:lang="lat">Ricinus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9206251</IRI>
+        <Literal xml:lang="lat">Helianthus annuus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9291</IRI>
+        <Literal xml:lang="lat">Annonaceae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9326020</IRI>
+        <Literal xml:lang="lat">Gallus gallus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/933</IRI>
+        <Literal xml:lang="lat">Sapindales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9331</IRI>
+        <Literal xml:lang="lat">Phasianidae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/941</IRI>
+        <Literal xml:lang="lat">Malvales</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9457155</IRI>
+        <Literal xml:lang="lat">Gallus gallus f. domesticus</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9531221</IRI>
+        <Literal xml:lang="lat">Ovis</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9614</IRI>
+        <Literal xml:lang="lat">Bovidae</Literal>
+    </AnnotationAssertion>
+    <AnnotationAssertion>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+        <IRI>https://www.gbif.org/species/9624496</IRI>
+        <Literal xml:lang="lat">Allium</Literal>
+    </AnnotationAssertion>
+    <SubAnnotationPropertyOf>
+        <AnnotationProperty abbreviatedIRI="skos:altLabel"/>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+    </SubAnnotationPropertyOf>
+    <SubAnnotationPropertyOf>
+        <AnnotationProperty abbreviatedIRI="skos:hiddenLabel"/>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+    </SubAnnotationPropertyOf>
+    <SubAnnotationPropertyOf>
+        <AnnotationProperty abbreviatedIRI="skos:prefLabel"/>
+        <AnnotationProperty abbreviatedIRI="rdfs:label"/>
+    </SubAnnotationPropertyOf>
+    <AnnotationPropertyRange>
+        <AnnotationProperty abbreviatedIRI="skos:broadMatch"/>
+        <AbbreviatedIRI>xsd:anyURI</AbbreviatedIRI>
+    </AnnotationPropertyRange>
+    <AnnotationPropertyRange>
+        <AnnotationProperty abbreviatedIRI="skos:closeMatch"/>
+        <AbbreviatedIRI>xsd:anyURI</AbbreviatedIRI>
+    </AnnotationPropertyRange>
+    <AnnotationPropertyRange>
+        <AnnotationProperty abbreviatedIRI="skos:exactMatch"/>
+        <AbbreviatedIRI>xsd:anyURI</AbbreviatedIRI>
+    </AnnotationPropertyRange>
+    <AnnotationPropertyRange>
+        <AnnotationProperty abbreviatedIRI="skos:narrowMatch"/>
+        <AbbreviatedIRI>xsd:anyURI</AbbreviatedIRI>
+    </AnnotationPropertyRange>
+    <AnnotationPropertyRange>
+        <AnnotationProperty abbreviatedIRI="skos:relatedMatch"/>
+        <AbbreviatedIRI>xsd:anyURI</AbbreviatedIRI>
+    </AnnotationPropertyRange>
+</Ontology>
+
+
+
+<!-- Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi -->
diff --git a/test/models/test_class_request_lang.rb b/test/models/test_class_request_lang.rb
index 2abd0745..1d84a160 100644
--- a/test/models/test_class_request_lang.rb
+++ b/test/models/test_class_request_lang.rb
@@ -21,15 +21,32 @@ def self.parse
                              process_rdf: true, index_search: false,
                              run_metrics: false, reasoning: false
     )
+    new('').submission_parse('APTO', 'Test parse ontology has iri label',
+                             'test/data/ontology_files/apto.owl', 1,
+                             process_rdf: true, index_search: false,
+                             run_metrics: false, reasoning: false
+    )
   end
 
   def teardown
     reset_lang
   end
 
+  def test_parse_ontology_has_iri_label
+    cls_label_1 = get_class_by_lang('http://aims.fao.org/aos/agrovoc/c_3376', 'APTO',
+    requested_lang: :'pt-br').label.first
+
+    assert_equal 'Hortaliça de folha', cls_label_1
+
+    cls_label_2 = get_class_by_lang('http://aims.fao.org/aos/agrovoc/c_3376', 'APTO',
+    requested_lang: :en).label.first
+
+    assert_equal 'Leaf vegetable', cls_label_2
+  end
+
   def test_requested_language_found
 
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', 'INRAETHES',
                             requested_lang: :FR)
     assert_equal 'industrialisation', cls.prefLabel
     assert_equal ['développement industriel'], cls.synonym
@@ -38,7 +55,7 @@ def test_requested_language_found
     assert_equal ['développement industriel'], properties.select { |x| x.to_s['altLabel'] }.values.first.map(&:to_s)
     assert_equal ['industrialisation'], properties.select { |x| x.to_s['prefLabel'] }.values.first.map(&:to_s)
 
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', 'INRAETHES',
                             requested_lang: :EN)
     assert_equal 'industrialization', cls.prefLabel
     assert_equal ['industrial development'], cls.synonym
@@ -47,7 +64,7 @@ def test_requested_language_found
     assert_equal ['industrial development'], properties.select { |x| x.to_s['altLabel'] }.values.first.map(&:to_s)
     assert_equal ['industrialization'], properties.select { |x| x.to_s['prefLabel'] }.values.first.map(&:to_s)
 
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_13078',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_13078', 'INRAETHES',
                             requested_lang: :FR)
     assert_equal 'carbone renouvelable', cls.prefLabel
 
@@ -55,11 +72,11 @@ def test_requested_language_found
 
   def test_requeststore_not_set
     skip 'need to be fixed in the futur for Virtuoso'
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', 'INRAETHES',
                             requested_lang: nil)
     assert_equal 'industrialization', cls.prefLabel
     assert_equal cls.prefLabel, cls.prefLabel(include_languages: true)
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', 'INRAETHES',
                             requested_lang: :ALL)
     assert_equal 'industrialization', cls.prefLabel
     assert_equal Hash, cls.prefLabel(include_languages: true).class
@@ -70,7 +87,7 @@ def test_requeststore_not_set
 
   def test_requested_language_not_found
 
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', 'INRAETHES',
                             requested_lang: :ES)
     assert_nil cls.prefLabel
     assert_empty cls.synonym
@@ -82,7 +99,7 @@ def test_requested_language_not_found
 
   def test_request_multiple_languages
 
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', 'INRAETHES',
                             requested_lang: [:EN, :FR])
     pref_label_all_languages = { en: 'industrialization', fr: 'industrialisation' }
     assert_includes pref_label_all_languages.values, cls.prefLabel
@@ -91,7 +108,7 @@ def test_request_multiple_languages
 
   def test_request_all_languages
 
-    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817',
+    cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', 'INRAETHES',
                             requested_lang: :ALL)
 
     pref_label_all_languages = { en: 'industrialization', fr: 'industrialisation' }
@@ -132,12 +149,12 @@ def get_class(cls, ont)
     LinkedData::Models::Class.find(cls).in(sub).first
   end
 
-  def get_class_by_lang(cls, requested_lang:, portal_languages: nil)
+  def get_class_by_lang(cls, ont, requested_lang:, portal_languages: nil)
     lang_set requested_lang: requested_lang, portal_languages: portal_languages
-    cls = get_class(cls, 'INRAETHES')
+    cls = get_class(cls, ont)
     refute_nil cls
     cls.bring_remaining
     cls.bring :unmapped
     cls
   end
-end
\ No newline at end of file
+end

From 194fcfb9a1c4660dabef738d16f32c210a23c343 Mon Sep 17 00:00:00 2001
From: Bilel Kihal <61744974+Bilelkihal@users.noreply.github.com>
Date: Fri, 24 Jan 2025 13:43:18 +0100
Subject: [PATCH 08/66] tag labels by none if they are not tagged with language
 tags (#182)

---
 .../submission_process/operations/submission_missing_labels.rb  | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/lib/ontologies_linked_data/services/submission_process/operations/submission_missing_labels.rb b/lib/ontologies_linked_data/services/submission_process/operations/submission_missing_labels.rb
index 9a4ca0d2..9d0ef3f9 100644
--- a/lib/ontologies_linked_data/services/submission_process/operations/submission_missing_labels.rb
+++ b/lib/ontologies_linked_data/services/submission_process/operations/submission_missing_labels.rb
@@ -194,6 +194,8 @@ def generate_missing_labels_each(artifacts = {}, logger, paging, page_classes, p
         if no_default_pref_label
           lang_rdfs_labels = c.label(include_languages: true)
 
+          lang_rdfs_labels = {none: lang_rdfs_labels} if lang_rdfs_labels.is_a?(Array) && !lang_rdfs_labels.blank?
+          
           # Set lang_rdfs_labels to { none: [] } if empty or no match for default label
           if Array(lang_rdfs_labels).empty? || (lang_rdfs_labels.keys & [portal_lang, :none, '@none']).empty?
             lang_rdfs_labels = { none: [] }

From 54ca6e05268746412fe4021207629d1b5c69700c Mon Sep 17 00:00:00 2001
From: Syphax bouazzouni <gs_bouazzouni@esi.dz>
Date: Fri, 7 Feb 2025 00:03:49 +0100
Subject: [PATCH 09/66] Feature: Migrate to Ruby 3.2 (#189)

* add ruby 3.2 ci testing

* migrate to ruby 3.2

* remove test CI for ruby 2.7

* unpin blocked gem as no more supporting ruby 2

* fix some code no more working in ruby 3

* fix ruby 3 warnings

* fix test_parse_ontology_has_iri_label for virtuoso
---
 .github/workflows/ruby-unit-tests.yml         |   6 +-
 Gemfile                                       |  17 +--
 Gemfile.lock                                  | 100 +++++++++++-------
 .../skos/skos_submission_roots.rb             |   2 +-
 .../diff/bubastis_diff.rb                     |   5 +-
 .../mappings/mappings.rb                      |   3 +-
 lib/ontologies_linked_data/models/class.rb    |   2 +-
 lib/ontologies_linked_data/models/metric.rb   |   2 +-
 .../models/mod/semantic_artefact.rb           |   2 -
 lib/ontologies_linked_data/models/ontology.rb |   3 +-
 .../models/ontology_submission.rb             |  16 +--
 .../models/provisional_class.rb               |   2 +-
 lib/ontologies_linked_data/models/resource.rb |   9 +-
 .../models/submission_status.rb               |   3 +-
 lib/ontologies_linked_data/parser/owlapi.rb   |   2 +-
 .../purl/purl_client.rb                       |   4 +-
 .../sample_data/ontology.rb                   |   8 +-
 .../serializers/jsonp.rb                      |   4 +-
 .../operations/submission_all_data_indexer.rb |   2 +-
 .../operations/submission_indexer.rb          |   3 +-
 .../operations/submission_obsolete_classes.rb |   3 +-
 lib/ontologies_linked_data/utils/file.rb      |   1 -
 .../utils/notifications.rb                    |   2 -
 lib/ontologies_linked_data/utils/triples.rb   |   2 +-
 mise.toml                                     |   2 +
 test/models/test_class_request_lang.rb        |  12 +--
 test/models/test_ontology_common.rb           |  51 ++++-----
 27 files changed, 145 insertions(+), 123 deletions(-)
 create mode 100644 mise.toml

diff --git a/.github/workflows/ruby-unit-tests.yml b/.github/workflows/ruby-unit-tests.yml
index 1ade7407..12d57325 100644
--- a/.github/workflows/ruby-unit-tests.yml
+++ b/.github/workflows/ruby-unit-tests.yml
@@ -9,8 +9,8 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        goo-slice: [ '20', '100', '500' ]
-        ruby-version: [ '2.7' ]
+        goo-slice: [ '100']
+        ruby-version: [ '3.2.0']
         triplestore: [ 'fs', 'ag', 'vo', 'gb' ]
     runs-on: ubuntu-latest
     steps:
@@ -34,7 +34,7 @@ jobs:
         # http://docs.codecov.io/docs/testing-with-docker
         run: |
           ci_env=`bash <(curl -s https://codecov.io/env)`
-          GOO_SLICES=${{ matrix.goo-slice }} bundle exec rake test:docker:${{ matrix.triplestore }} TESTOPTS="-v"
+          GOO_SLICES=${{ matrix.goo-slice }} RUBYOPT="-W0" bundle exec rake test:docker:${{ matrix.triplestore }} TESTOPTS="-v"
       - name: Upload coverage reports to Codecov
         uses: codecov/codecov-action@v3
         with:
diff --git a/Gemfile b/Gemfile
index a2e9a576..c6f36f2d 100644
--- a/Gemfile
+++ b/Gemfile
@@ -5,24 +5,25 @@ gem 'addressable', '~> 2.8'
 gem 'bcrypt', '~> 3.0'
 gem 'cube-ruby', require: 'cube'
 gem 'faraday', '~> 1.9'
-gem 'ffi', '~> 1.16.3'
+gem 'ffi'
 gem 'libxml-ruby'
 gem 'minitest'
 gem 'multi_json', '~> 1.0'
 gem 'oj'
 gem 'omni_logger'
 gem 'pony'
-gem 'rack', '~> 1.0'
-gem 'rack-test', '~> 0.6'
-gem 'rake', '~> 10.0'
+gem 'rack'
+gem 'rack-test'
+gem 'rake'
 gem 'rest-client'
 gem 'rsolr', '~> 1.0'
 gem 'rubyzip', '~> 1.0'
 gem 'thin'
 gem 'request_store'
 gem 'jwt'
-gem 'json-ld', '~> 3.0.2'
+gem 'json-ld', '~> 3.2.0'
 gem "parallel", "~> 1.24"
+gem 'rdf-raptor', github:'ruby-rdf/rdf-raptor', ref: '6392ceabf71c3233b0f7f0172f662bd4a22cd534' # use version 3.3.0 when available
 
 
 # Testing
@@ -40,5 +41,9 @@ group :development do
   gem 'rubocop', require: false
 end
 # NCBO gems (can be from a local dev path or from rubygems/git)
-gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'development'
+gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'feature/migrate-ruby-3.2'
 gem 'sparql-client', github: 'ontoportal-lirmm/sparql-client', branch: 'development'
+
+gem 'net-ftp'
+gem 'public_suffix', '~> 5.1.1'
+gem 'net-imap', '~> 0.4.18'
diff --git a/Gemfile.lock b/Gemfile.lock
index fdc2b9a8..e8f2516a 100644
--- a/Gemfile.lock
+++ b/Gemfile.lock
@@ -1,12 +1,12 @@
 GIT
   remote: https://github.com/ontoportal-lirmm/goo.git
-  revision: 27300f28ca6c656c7e78af65013d88b792a6312f
-  branch: development
+  revision: dd3ea6c0f583c2044622a9f872a0bd18e898bb79
+  branch: feature/migrate-ruby-3.2
   specs:
     goo (0.0.2)
       addressable (~> 2.8)
       pry
-      rdf (= 3.2.11)
+      rdf
       rdf-raptor
       rdf-rdfxml
       rdf-vocab
@@ -18,13 +18,22 @@ GIT
 
 GIT
   remote: https://github.com/ontoportal-lirmm/sparql-client.git
-  revision: 4364d34e9e4c411f1dd0ea706bf052465bf0b467
+  revision: 736b7650e28db3ce5e3e49511ac30f958a29e8f1
   branch: development
   specs:
     sparql-client (3.2.2)
       net-http-persistent (~> 4.0, >= 4.0.2)
       rdf (~> 3.2, >= 3.2.11)
 
+GIT
+  remote: https://github.com/ruby-rdf/rdf-raptor.git
+  revision: 6392ceabf71c3233b0f7f0172f662bd4a22cd534
+  ref: 6392ceabf71c3233b0f7f0172f662bd4a22cd534
+  specs:
+    rdf-raptor (3.3.0)
+      ffi (~> 1.15)
+      rdf (~> 3.3)
+
 GEM
   remote: https://rubygems.org/
   specs:
@@ -39,6 +48,7 @@ GEM
     ansi (1.5.0)
     ast (2.4.2)
     base64 (0.2.0)
+    bcp47_spec (0.2.1)
     bcrypt (3.1.20)
     bigdecimal (3.1.9)
     builder (3.3.0)
@@ -83,7 +93,7 @@ GEM
     faraday-patron (1.0.0)
     faraday-rack (1.0.0)
     faraday-retry (1.0.3)
-    ffi (1.16.3)
+    ffi (1.17.1)
     hashdiff (1.1.2)
     hashie (5.0.0)
     htmlentities (4.3.4)
@@ -93,15 +103,21 @@ GEM
     i18n (0.9.5)
       concurrent-ruby (~> 1.0)
     json (2.9.1)
-    json-ld (3.0.2)
-      multi_json (~> 1.12)
-      rdf (>= 2.2.8, < 4.0)
+    json-canonicalization (0.4.0)
+    json-ld (3.2.5)
+      htmlentities (~> 4.3)
+      json-canonicalization (~> 0.3, >= 0.3.2)
+      link_header (~> 0.0, >= 0.0.8)
+      multi_json (~> 1.15)
+      rack (>= 2.2, < 4)
+      rdf (~> 3.2, >= 3.2.10)
     jwt (2.10.1)
       base64
-    language_server-protocol (3.17.0.3)
-    launchy (3.0.1)
+    language_server-protocol (3.17.0.4)
+    launchy (3.1.0)
       addressable (~> 2.8)
       childprocess (~> 5.0)
+      logger (~> 1.6)
     libxml-ruby (5.0.3)
     link_header (0.0.8)
     logger (1.6.5)
@@ -116,7 +132,7 @@ GEM
     mime-types (3.6.0)
       logger
       mime-types-data (~> 3.2015)
-    mime-types-data (3.2025.0107)
+    mime-types-data (3.2025.0204)
     mini_mime (1.1.5)
     minitest (4.7.5)
     minitest-reporters (0.14.24)
@@ -126,6 +142,9 @@ GEM
       powerbar
     multi_json (1.15.0)
     multipart-post (2.4.1)
+    net-ftp (0.3.8)
+      net-protocol
+      time
     net-http-persistent (4.0.5)
       connection_pool (~> 2.2)
     net-imap (0.4.18)
@@ -135,7 +154,7 @@ GEM
       net-protocol
     net-protocol (0.2.2)
       timeout
-    net-smtp (0.5.0)
+    net-smtp (0.5.1)
       net-protocol
     netrc (0.11.0)
     oj (3.16.9)
@@ -145,7 +164,7 @@ GEM
       logger
     ostruct (0.6.1)
     parallel (1.26.3)
-    parser (3.3.7.0)
+    parser (3.3.7.1)
       ast (~> 2.4.1)
       racc
     pony (1.13.1)
@@ -157,25 +176,24 @@ GEM
       method_source (~> 1.0)
     public_suffix (5.1.1)
     racc (1.8.1)
-    rack (1.6.13)
-    rack-test (0.8.3)
-      rack (>= 1.0, < 3)
+    rack (2.2.10)
+    rack-test (2.2.0)
+      rack (>= 1.3)
     rainbow (3.1.1)
-    rake (10.5.0)
-    rdf (3.2.11)
+    rake (13.2.1)
+    rdf (3.3.2)
+      bcp47_spec (~> 0.2)
+      bigdecimal (~> 3.1, >= 3.1.5)
       link_header (~> 0.0, >= 0.0.8)
-    rdf-raptor (3.2.0)
-      ffi (~> 1.15)
-      rdf (~> 3.2)
-    rdf-rdfxml (3.2.2)
-      builder (~> 3.2)
+    rdf-rdfxml (3.3.0)
+      builder (~> 3.2, >= 3.2.4)
       htmlentities (~> 4.3)
-      rdf (~> 3.2)
-      rdf-xsd (~> 3.2)
-    rdf-vocab (3.2.7)
-      rdf (~> 3.2, >= 3.2.4)
-    rdf-xsd (3.2.1)
-      rdf (~> 3.2)
+      rdf (~> 3.3)
+      rdf-xsd (~> 3.3)
+    rdf-vocab (3.3.2)
+      rdf (~> 3.3)
+    rdf-xsd (3.3.0)
+      rdf (~> 3.3)
       rexml (~> 3.2)
     redis (5.3.0)
       redis-client (>= 0.22.0)
@@ -192,17 +210,17 @@ GEM
     rexml (3.4.0)
     rsolr (1.1.2)
       builder (>= 2.1.2)
-    rubocop (1.70.0)
+    rubocop (1.71.2)
       json (~> 2.3)
       language_server-protocol (>= 3.17.0)
       parallel (~> 1.10)
       parser (>= 3.3.0.2)
       rainbow (>= 2.2.2, < 4.0)
       regexp_parser (>= 2.9.3, < 3.0)
-      rubocop-ast (>= 1.36.2, < 2.0)
+      rubocop-ast (>= 1.38.0, < 2.0)
       ruby-progressbar (~> 1.7)
       unicode-display_width (>= 2.4.0, < 4.0)
-    rubocop-ast (1.37.0)
+    rubocop-ast (1.38.0)
       parser (>= 3.3.1.0)
     ruby-progressbar (1.13.0)
     ruby2_keywords (0.0.5)
@@ -224,6 +242,8 @@ GEM
       eventmachine (~> 1.0, >= 1.0.4)
       rack (>= 1, < 3)
     thread_safe (0.3.6)
+    time (0.4.1)
+      date
     timeout (0.4.3)
     tzinfo (0.3.62)
     unicode-display_width (3.1.4)
@@ -246,22 +266,26 @@ DEPENDENCIES
   cube-ruby
   email_spec
   faraday (~> 1.9)
-  ffi (~> 1.16.3)
+  ffi
   goo!
-  json-ld (~> 3.0.2)
+  json-ld (~> 3.2.0)
   jwt
   libxml-ruby
   minitest
   minitest-reporters (>= 0.5.0)
   multi_json (~> 1.0)
+  net-ftp
+  net-imap (~> 0.4.18)
   oj
   omni_logger
   parallel (~> 1.24)
   pony
   pry
-  rack (~> 1.0)
-  rack-test (~> 0.6)
-  rake (~> 10.0)
+  public_suffix (~> 5.1.1)
+  rack
+  rack-test
+  rake
+  rdf-raptor!
   request_store
   rest-client
   rsolr (~> 1.0)
@@ -275,4 +299,4 @@ DEPENDENCIES
   webmock
 
 BUNDLED WITH
-   2.1.4
+   2.6.3
diff --git a/lib/ontologies_linked_data/concerns/ontology_submissions/skos/skos_submission_roots.rb b/lib/ontologies_linked_data/concerns/ontology_submissions/skos/skos_submission_roots.rb
index 717afb3a..624c792d 100644
--- a/lib/ontologies_linked_data/concerns/ontology_submissions/skos/skos_submission_roots.rb
+++ b/lib/ontologies_linked_data/concerns/ontology_submissions/skos/skos_submission_roots.rb
@@ -33,7 +33,7 @@ def roots_by_query(query_body, page, paged, pagesize)
           #needs to get cached
           class_ids = []
 
-          Goo.sparql_query_client.query(root_skos, { graphs: [self.id] }).each_solution do |s|
+          Goo.sparql_query_client.query(root_skos, **{ graphs: [self.id] }).each_solution do |s|
             class_ids << s[:root]
           end
 
diff --git a/lib/ontologies_linked_data/diff/bubastis_diff.rb b/lib/ontologies_linked_data/diff/bubastis_diff.rb
index ff72ffb4..0184edd7 100644
--- a/lib/ontologies_linked_data/diff/bubastis_diff.rb
+++ b/lib/ontologies_linked_data/diff/bubastis_diff.rb
@@ -77,7 +77,7 @@ def setup_environment
         if (not Dir.exist?(@output_repo))
           begin
             FileUtils.mkdir_p(@output_repo)
-          rescue SystemCallError => e
+          rescue SystemCallError
             raise MkdirException, "Output folder #{@output_repo} folder cannot be created."
           end
         end
@@ -116,8 +116,7 @@ def call_bubastis_java_cmd
           Diff.logger.info(stdout)
         end
         if not File.exist?(@file_diff_path)
-          raise Diff::BubastisDiffException, "Bubastis diff command exited with status=#{status.exitstatus}. " +\
-          "Output file #{@file_diff_path} cannot be found."
+          raise Diff::BubastisDiffException, "Bubastis diff command exited with status=#{status.exitstatus}. " + "Output file #{@file_diff_path} cannot be found."
         else
           Diff.logger.info("Output size #{File.stat(@file_diff_path).size} in `#{@file_diff_path}`")
         end
diff --git a/lib/ontologies_linked_data/mappings/mappings.rb b/lib/ontologies_linked_data/mappings/mappings.rb
index 6f0fde64..f4dd99ad 100644
--- a/lib/ontologies_linked_data/mappings/mappings.rb
+++ b/lib/ontologies_linked_data/mappings/mappings.rb
@@ -66,7 +66,6 @@ def self.mapping_ontologies_count(sub1, sub2, reload_cache = false)
       eos
       group_count = sub2.nil? ? {} : nil
       count = 0
-      latest_sub_ids = self.retrieve_latest_submission_ids
       epr = Goo.sparql_query_client(:main)
 
       mapping_predicates().each do |_source, mapping_predicate|
@@ -698,7 +697,7 @@ def self.mappings_ont_build_query(class_id, page, size, sub1, sub2)
     def self.mappings_union_template(class_id, sub1, sub2, predicate, bind)
       class_id_subject = class_id.nil? ? '?s1' :  "<#{class_id.to_s}>"
       target_graph = sub2.nil? ? '?g' :  "<#{sub2.to_s}>"
-      union_template = <<-eos
+      return  <<-eos
 {
   GRAPH <#{sub1.to_s}> {
       #{class_id_subject} <#{predicate}> ?o .
diff --git a/lib/ontologies_linked_data/models/class.rb b/lib/ontologies_linked_data/models/class.rb
index 87431a36..e4a18ff6 100644
--- a/lib/ontologies_linked_data/models/class.rb
+++ b/lib/ontologies_linked_data/models/class.rb
@@ -447,7 +447,7 @@ def retrieve_descendants(page=nil, size=nil)
         total_size = ids.length
         if !page.nil?
           ids = ids.to_a.sort
-          rstart = (page -1) * size
+          rstart = (page - 1) * size
           rend = (page * size) -1
           ids = ids[rstart..rend]
         end
diff --git a/lib/ontologies_linked_data/models/metric.rb b/lib/ontologies_linked_data/models/metric.rb
index 2d39be66..e3950efb 100644
--- a/lib/ontologies_linked_data/models/metric.rb
+++ b/lib/ontologies_linked_data/models/metric.rb
@@ -40,7 +40,7 @@ def self.ontology_submission_links(m)
             ont.bring(:acronym) if ont.bring?(:acronym)
             acronym_link = "ontologies/#{ont.acronym}"
             submission_link = "/submissions/#{m.submission.first.submissionId}"
-          rescue Exception => e
+          rescue Exception
             acronym_link = ""
             submission_link = ""
           end
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index 98919381..14f5aaa1 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -217,7 +217,6 @@ def distribution(dist_id)
             end
         
             def all_distributions(options = {})
-                status = options[:status]
                 to_bring = options[:includes]
                 @ontology.bring(:submissions)
         
@@ -235,4 +234,3 @@ def analytics
         end
     end
 end
-  
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/models/ontology.rb b/lib/ontologies_linked_data/models/ontology.rb
index 9b93fc8a..625bf203 100644
--- a/lib/ontologies_linked_data/models/ontology.rb
+++ b/lib/ontologies_linked_data/models/ontology.rb
@@ -202,7 +202,6 @@ def next_submission_id
       end
 
       def highest_submission_id(options = {})
-        reload = options[:reload] || false
         status = options[:status] || :ready
 
         LinkedData::Models::Ontology.where.models([self])
@@ -215,7 +214,7 @@ def highest_submission_id(options = {})
 
         begin
           subs = self.submissions
-        rescue Exception => e
+        rescue Exception
           i = 0
           num_calls = LinkedData.settings.num_retries_4store
           subs = nil
diff --git a/lib/ontologies_linked_data/models/ontology_submission.rb b/lib/ontologies_linked_data/models/ontology_submission.rb
index 53f4cf28..ff9d4469 100644
--- a/lib/ontologies_linked_data/models/ontology_submission.rb
+++ b/lib/ontologies_linked_data/models/ontology_submission.rb
@@ -179,7 +179,7 @@ def self.agents_attrs
       end
 
       # Hypermedia settings
-      embed *%i[contact ontology metrics] + agents_attrs
+      embed *(%i[contact ontology metrics] + agents_attrs)
 
       def self.embed_values_hash
         out = {
@@ -237,7 +237,7 @@ def self.ontology_link(m)
           begin
             m.ontology.bring(:acronym) if m.ontology.bring?(:acronym)
             ontology_link = "ontologies/#{m.ontology.acronym}"
-          rescue Exception => e
+          rescue Exception
             ontology_link = ""
           end
         end
@@ -301,7 +301,7 @@ def self.clear_indexed_content(ontology)
         conn = Goo.init_search_connection(:ontology_data)
         begin
           conn.delete_by_query("ontology_t:\"#{ontology}\"")
-        rescue StandardError => e
+        rescue StandardError
           # puts e.message
         end
         conn
@@ -340,7 +340,7 @@ def sanity_check
 
         begin
           sum_only = self.ontology.summaryOnly
-        rescue Exception => e
+        rescue Exception
           i = 0
           num_calls = LinkedData.settings.num_retries_4store
           sum_only = nil
@@ -354,7 +354,7 @@ def sanity_check
               self.ontology.bring(:summaryOnly)
               sum_only = self.ontology.summaryOnly
               puts "Success getting summaryOnly for #{self.id.to_s} after retrying #{i} times..."
-            rescue Exception => e1
+            rescue Exception
               sum_only = nil
 
               raise $!, "#{$!} after retrying #{i} times...", $!.backtrace if i == num_calls
@@ -540,7 +540,7 @@ def metrics_from_file(logger = nil)
 
         begin
           metrics = CSV.read(m_path)
-        rescue Exception => e
+        rescue Exception
           logger.error("Unable to find metrics file: #{m_path}")
           logger.flush
         end
@@ -852,7 +852,7 @@ def parsable?(logger: Logger.new($stdout))
         parsable = true
         begin
           owlapi.parse
-        rescue StandardError => e
+        rescue StandardError
           parsable = false
         end
         parsable
@@ -892,7 +892,7 @@ def check_ftp_file(uri)
         ftp.login
         begin
           file_exists = ftp.size(uri.path) > 0
-        rescue Exception => e
+        rescue Exception
           # Check using another method
           path = uri.path.split("/")
           filename = path.pop
diff --git a/lib/ontologies_linked_data/models/provisional_class.rb b/lib/ontologies_linked_data/models/provisional_class.rb
index 1f4b06c4..ff8306ad 100644
--- a/lib/ontologies_linked_data/models/provisional_class.rb
+++ b/lib/ontologies_linked_data/models/provisional_class.rb
@@ -33,7 +33,7 @@ class ProvisionalClass < LinkedData::Models::Base
                   else
                     ""
                   end
-                rescue Exception => e
+                rescue Exception
                   ""
                 end
               }, Goo.vocabulary["Ontology"])
diff --git a/lib/ontologies_linked_data/models/resource.rb b/lib/ontologies_linked_data/models/resource.rb
index 6caf601e..beec6889 100644
--- a/lib/ontologies_linked_data/models/resource.rb
+++ b/lib/ontologies_linked_data/models/resource.rb
@@ -80,7 +80,7 @@ def namespaces
 
       def transform_to_prefixes(ns_count, prefixes, uris)
         uris.each do |uri|
-          namespace, id = namespace_predicate(uri)
+          namespace, _ = namespace_predicate(uri)
           next if namespace.nil? || prefixes.value?(namespace)
 
           prefix, prefix_namespace = Goo.namespaces.select { |_k, v| v.to_s.eql?(namespace) }.first
@@ -177,12 +177,13 @@ def get_type(value)
       end
 
       def namespace_predicate(property_url)
-        return nil if property_url.is_a?(RDF::Literal) || !URI.regexp.match?(property_url)
-        regex = /^(?<namespace>.*[\/#])(?<id>[^\/#]+)$/
+        return nil if property_url.is_a?(RDF::Literal) || !URI::DEFAULT_PARSER.make_regexp.match?(property_url)
+
+        regex = %r{^(?<namespace>.*[/#])(?<id>[^/#]+)$}
         match = regex.match(property_url.to_s)
         [match[:namespace], match[:id]] if match
       end
 
     end
   end
-end
\ No newline at end of file
+end
diff --git a/lib/ontologies_linked_data/models/submission_status.rb b/lib/ontologies_linked_data/models/submission_status.rb
index d7c74363..04797343 100644
--- a/lib/ontologies_linked_data/models/submission_status.rb
+++ b/lib/ontologies_linked_data/models/submission_status.rb
@@ -89,7 +89,7 @@ def self.readable_statuses(statuses)
 
             begin
               readable_stats = statuses_raw.map { |s| s.bring(:code); s.code }
-            rescue Exception => e
+            rescue Exception
               readable_stats = nil
 
               if i == num_calls
@@ -145,4 +145,3 @@ def ==(that)
     end
   end
 end
-
diff --git a/lib/ontologies_linked_data/parser/owlapi.rb b/lib/ontologies_linked_data/parser/owlapi.rb
index 20cfc971..d8720f60 100644
--- a/lib/ontologies_linked_data/parser/owlapi.rb
+++ b/lib/ontologies_linked_data/parser/owlapi.rb
@@ -124,7 +124,7 @@ def call_owlapi_java_command
           end
           if not File.exist?(File.join([@output_repo, "owlapi.xrdf"]))
             raise Parser::OWLAPIParserException, "OWLAPI java command exited with"+
-            "  #{w.value.exitstatus}. " +\
+            "  #{w.value.exitstatus}. " + \
             "Output file #{File.join([@output_repo, "owlapi.xrdf"])} cannot be found."
           else
             @file_triples_path = File.join([@output_repo, "owlapi.xrdf"])
diff --git a/lib/ontologies_linked_data/purl/purl_client.rb b/lib/ontologies_linked_data/purl/purl_client.rb
index 6180d07b..eaa560bf 100644
--- a/lib/ontologies_linked_data/purl/purl_client.rb
+++ b/lib/ontologies_linked_data/purl/purl_client.rb
@@ -63,7 +63,7 @@ def purl_exists(acronym)
     def delete_purl(acronym)
       headers = purl_server_login()
       http = get_http()
-      res, data = http.delete(PURL_ADMIN_PATH.call(acronym), headers)
+      res, _ = http.delete(PURL_ADMIN_PATH.call(acronym), headers)
 
       return res.code == "200"
     end
@@ -78,4 +78,4 @@ def get_http()
       return http
     end
   end
-end
\ No newline at end of file
+end
diff --git a/lib/ontologies_linked_data/sample_data/ontology.rb b/lib/ontologies_linked_data/sample_data/ontology.rb
index 61dcc04d..b7a363e9 100644
--- a/lib/ontologies_linked_data/sample_data/ontology.rb
+++ b/lib/ontologies_linked_data/sample_data/ontology.rb
@@ -116,7 +116,7 @@ def self.create_ontologies_and_submissions(options = {})
 
               begin
                 ss.process_submission(tmp_log, process_options)
-              rescue Exception => e
+              rescue Exception
                 puts "Error processing submission: #{ss.id.to_s}"
                 puts "See test log for errors: #{test_log_file.path}"
                 raise
@@ -132,7 +132,7 @@ def self.load_semantic_types_ontology(options = {})
         file_path = options[:file_path]
         file_path = "../../../../test/data/ontology_files/umls_semantictypes.ttl" if file_path.nil?
 
-        count, acronyms, sty = create_ontologies_and_submissions({
+        _, _, sty = create_ontologies_and_submissions({
                                                                    ont_count: 1,
                                                                    submission_count: 1,
                                                                    process_submission: true,
@@ -176,7 +176,7 @@ def self.delete_ontologies_and_submissions
 
       def self.sample_owl_ontologies(process_submission: false, process_options: nil)
         process_options ||= {process_rdf: true, extract_metadata: false, index_search: false}
-        count, acronyms, bro = create_ontologies_and_submissions({
+        _, _, bro = create_ontologies_and_submissions({
                                                                    process_submission: process_submission,
                                                                    process_options: process_options,
                                                                    acronym: "BROTEST",
@@ -187,7 +187,7 @@ def self.sample_owl_ontologies(process_submission: false, process_options: nil)
                                                                  })
 
         # This one has some nasty looking IRIS with slashes in the anchor
-        count, acronyms, mccl = create_ontologies_and_submissions({
+        _, _, mccl = create_ontologies_and_submissions({
                                                                     process_submission: process_submission,
                                                                     process_options: process_options,
                                                                     acronym: "MCCLTEST",
diff --git a/lib/ontologies_linked_data/serializers/jsonp.rb b/lib/ontologies_linked_data/serializers/jsonp.rb
index 48a28ccf..58cb5e1c 100644
--- a/lib/ontologies_linked_data/serializers/jsonp.rb
+++ b/lib/ontologies_linked_data/serializers/jsonp.rb
@@ -5,7 +5,7 @@ def self.serialize(obj, options)
         callback = options[:params]["callback"] || options[:params]["jsonp"] || "?"
         variable = options[:params]["variable"]
         json = LinkedData::Serializers::JSON.serialize(obj, options)
-        response = begin
+        begin
           if callback && variable
             "var #{variable} = #{json};\n#{callback}(#{variable});"
           elsif variable
@@ -19,4 +19,4 @@ def self.serialize(obj, options)
       end
     end
   end
-end
\ No newline at end of file
+end
diff --git a/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb b/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb
index e236883c..6d2d080b 100644
--- a/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb
+++ b/lib/ontologies_linked_data/services/submission_process/operations/submission_all_data_indexer.rb
@@ -6,7 +6,7 @@ class OntologySubmissionAllDataIndexer < OntologySubmissionProcess
       def process(logger, options = nil)
         status = LinkedData::Models::SubmissionStatus.find('INDEXED_ALL_DATA').first
         begin
-          index_all_data(logger, options)
+          index_all_data(logger, **options)
           @submission.add_submission_status(status)
         rescue StandardError => e
           logger.error("Error indexing all data for submission: #{e.message} : #{e.backtrace.join("\n")}")
diff --git a/lib/ontologies_linked_data/services/submission_process/operations/submission_indexer.rb b/lib/ontologies_linked_data/services/submission_process/operations/submission_indexer.rb
index ac8b22f4..471df1f9 100644
--- a/lib/ontologies_linked_data/services/submission_process/operations/submission_indexer.rb
+++ b/lib/ontologies_linked_data/services/submission_process/operations/submission_indexer.rb
@@ -117,7 +117,7 @@ def index(logger, commit = true, optimize = true)
                     begin
                       # this cal is needed for indexing of properties
                       LinkedData::Models::Class.map_attributes(c, paging.equivalent_predicates, include_languages: true)
-                    rescue Exception => e
+                    rescue Exception
                       i = 0
                       num_calls = LinkedData.settings.num_retries_4store
                       success = nil
@@ -195,4 +195,3 @@ def index(logger, commit = true, optimize = true)
     end
   end
 end
-
diff --git a/lib/ontologies_linked_data/services/submission_process/operations/submission_obsolete_classes.rb b/lib/ontologies_linked_data/services/submission_process/operations/submission_obsolete_classes.rb
index aedb70a4..42086c72 100644
--- a/lib/ontologies_linked_data/services/submission_process/operations/submission_obsolete_classes.rb
+++ b/lib/ontologies_linked_data/services/submission_process/operations/submission_obsolete_classes.rb
@@ -70,7 +70,7 @@ def generate_obsolete_classes(logger, file_path)
             fsave.write(LinkedData::Utils::Triples.obselete_class_triple(class_id) + "\n")
           end
           fsave.close()
-          result = Goo.sparql_data_client.append_triples_from_file(
+          Goo.sparql_data_client.append_triples_from_file(
             @submission.id,
             save_in_file,
             mime_type = "application/x-turtle")
@@ -79,4 +79,3 @@ def generate_obsolete_classes(logger, file_path)
     end
   end
 end
-
diff --git a/lib/ontologies_linked_data/utils/file.rb b/lib/ontologies_linked_data/utils/file.rb
index dd517877..59bf5fb9 100644
--- a/lib/ontologies_linked_data/utils/file.rb
+++ b/lib/ontologies_linked_data/utils/file.rb
@@ -124,7 +124,6 @@ def self.download_file(uri, limit = 10)
           file, filename = download_file_ftp(uri)
         else
           file = Tempfile.new('ont-rest-file')
-          file_size = 0
           filename = nil
           http_session = Net::HTTP.new(uri.host, uri.port)
           http_session.verify_mode = OpenSSL::SSL::VERIFY_NONE
diff --git a/lib/ontologies_linked_data/utils/notifications.rb b/lib/ontologies_linked_data/utils/notifications.rb
index cae49e50..6950bc62 100644
--- a/lib/ontologies_linked_data/utils/notifications.rb
+++ b/lib/ontologies_linked_data/utils/notifications.rb
@@ -81,7 +81,6 @@ def self.new_user(user)
                                .gsub('%email%', user.email.to_s)
                                .gsub('%site_url%', LinkedData.settings.ui_host)
                                .gsub('%ui_name%', LinkedData.settings.ui_name)
-        recipients = LinkedData.settings.admin_emails
 
         Notifier.notify_support_grouped subject, body
       end
@@ -96,7 +95,6 @@ def self.new_ontology(ont)
                                    .gsub('%site_url%', LinkedData.settings.ui_host)
                                    .gsub('%ont_url%', LinkedData::Hypermedia.generate_links(ont)['ui'])
                                    .gsub('%ui_name%', LinkedData.settings.ui_name)
-        recipients = LinkedData.settings.admin_emails
 
         Notifier.notify_support_grouped subject, body
       end
diff --git a/lib/ontologies_linked_data/utils/triples.rb b/lib/ontologies_linked_data/utils/triples.rb
index fe6542c3..ff9b46a4 100644
--- a/lib/ontologies_linked_data/utils/triples.rb
+++ b/lib/ontologies_linked_data/utils/triples.rb
@@ -79,7 +79,7 @@ def self.label_for_class_triple(class_id, property, label, language=nil)
           params[:datatype] = RDF.langString
           params[:language] = lang.to_sym
         end
-        triple(class_id, property, RDF::Literal.new(label, params))
+        triple(class_id, property, RDF::Literal.new(label, **params))
       end
 
       def self.generated_label(class_id, existing_label)
diff --git a/mise.toml b/mise.toml
new file mode 100644
index 00000000..47a05ac7
--- /dev/null
+++ b/mise.toml
@@ -0,0 +1,2 @@
+[tools]
+ruby = "3.2.0"
diff --git a/test/models/test_class_request_lang.rb b/test/models/test_class_request_lang.rb
index 1d84a160..e3b12455 100644
--- a/test/models/test_class_request_lang.rb
+++ b/test/models/test_class_request_lang.rb
@@ -33,15 +33,15 @@ def teardown
   end
 
   def test_parse_ontology_has_iri_label
-    cls_label_1 = get_class_by_lang('http://aims.fao.org/aos/agrovoc/c_3376', 'APTO',
-    requested_lang: :'pt-br').label.first
+    cls_labels_1 = get_class_by_lang('http://aims.fao.org/aos/agrovoc/c_3376', 'APTO',
+    requested_lang: :'pt-br').label
 
-    assert_equal 'Hortaliça de folha', cls_label_1
+    assert_includes cls_labels_1 , 'Hortaliça de folha'
 
-    cls_label_2 = get_class_by_lang('http://aims.fao.org/aos/agrovoc/c_3376', 'APTO',
-    requested_lang: :en).label.first
+    cls_labels_2 = get_class_by_lang('http://aims.fao.org/aos/agrovoc/c_3376', 'APTO',
+    requested_lang: :en).label
 
-    assert_equal 'Leaf vegetable', cls_label_2
+    assert_includes cls_labels_2,  'Leaf vegetable'
   end
 
   def test_requested_language_found
diff --git a/test/models/test_ontology_common.rb b/test/models/test_ontology_common.rb
index a0673129..ce5696f1 100644
--- a/test/models/test_ontology_common.rb
+++ b/test/models/test_ontology_common.rb
@@ -7,20 +7,21 @@ def create_count_mapping
       LinkedData::Mappings.create_mapping_counts(Logger.new(TestLogFile.new))
       LinkedData::Models::MappingCount.where.all.length
     end
+
     def submission_dependent_objects(format, acronym, user_name, name_ont)
-      #ontology format
+      # ontology format
       owl = LinkedData::Models::OntologyFormat.where(:acronym => format).first
       assert_instance_of LinkedData::Models::OntologyFormat, owl
 
-      #user test_linked_models
+      # user test_linked_models
       user = LinkedData::Models::User.where(:username => user_name).first
       if user.nil?
-        user = LinkedData::Models::User.new(:username => user_name, :email => "some@email.org" )
+        user = LinkedData::Models::User.new(:username => user_name, :email => "some@email.org")
         user.passwordHash = "some random pass hash"
         user.save
       end
       #
-      #ontology
+      # ontology
       ont = LinkedData::Models::Ontology.where(:acronym => acronym).first
       if ont.nil?
 
@@ -35,7 +36,7 @@ def submission_dependent_objects(format, acronym, user_name, name_ont)
       contact = LinkedData::Models::Contact.where(name: contact_name, email: contact_email).first
       contact = LinkedData::Models::Contact.new(name: contact_name, email: contact_email).save if contact.nil?
 
-      #Submission Status
+      # Submission Status
       return owl, ont, user, contact
     end
 
@@ -47,7 +48,7 @@ def submission_dependent_objects(format, acronym, user_name, name_ont)
     #   diff              = false
     #   delete            = true  # delete any existing submissions
     ##############################################
-    def submission_parse(acronym, name, ontologyFile, id, parse_options={})
+    def submission_parse(acronym, name, ontologyFile, id, parse_options = {})
       if Goo.backend_vo?
         old_slices = Goo.slice_loading_size
         Goo.slice_loading_size = 20
@@ -67,7 +68,7 @@ def submission_parse(acronym, name, ontologyFile, id, parse_options={})
           end
         end
       end
-      ont_submission =  LinkedData::Models::OntologySubmission.new({ :submissionId => id})
+      ont_submission = LinkedData::Models::OntologySubmission.new({ :submissionId => id })
       ont_submission.uri = RDF::URI.new('https://test.com')
       ont_submission.description = 'description example'
       ont_submission.status = 'beta'
@@ -85,7 +86,7 @@ def submission_parse(acronym, name, ontologyFile, id, parse_options={})
         ontology_type = "UMLS"
       end
 
-      ont_format, ont, user, contact = submission_dependent_objects(ontology_type, acronym, "test_linked_models", name)
+      ont_format, ont, _, contact = submission_dependent_objects(ontology_type, acronym, "test_linked_models", name)
       ont_submission.contact = [contact]
       ont_submission.released = DateTime.now - 4
       ont_submission.hasOntologyLanguage = ont_format
@@ -105,7 +106,7 @@ def submission_parse(acronym, name, ontologyFile, id, parse_options={})
 
       ont_submission.save
 
-      assert_equal true, ont_submission.exist?(reload=true)
+      assert_equal true, ont_submission.exist?(reload = true)
       begin
         tmp_log = Logger.new(TestLogFile.new)
         t = Benchmark.measure do
@@ -124,12 +125,11 @@ def submission_parse(acronym, name, ontologyFile, id, parse_options={})
 
     def init_test_ontology_msotest(acr)
       ont = LinkedData::Models::Ontology.find(acr)
-                .include(submissions: [:submissionStatus]).first
+                                        .include(submissions: [:submissionStatus]).first
       if not ont.nil?
-        return
         LinkedData::TestCase.backend_4s_delete
       end
-      ont_submission =  LinkedData::Models::OntologySubmission.new({ :submissionId => 1 })
+      ont_submission = LinkedData::Models::OntologySubmission.new({ :submissionId => 1 })
       ont_submission.uri = RDF::URI.new('https://test.com')
       ont_submission.description = 'description example'
       ont_submission.status = 'beta'
@@ -145,7 +145,7 @@ def init_test_ontology_msotest(acr)
       uploadFilePath = LinkedData::Models::OntologySubmission.copy_file_repository(acr, 1, file_path)
       ont_submission.uploadFilePath = uploadFilePath
       owl, ont, user, contact = submission_dependent_objects("OWL", acr, "test_linked_models",
-                                                             "%s ont created by mso for testing"%acr)
+                                                             "%s ont created by mso for testing" % acr)
       ont.administeredBy = [user]
       ont_submission.contact = [contact]
       ont_submission.released = DateTime.now - 4
@@ -166,8 +166,8 @@ def init_test_ontology_msotest(acr)
       ont_submission.authorProperty = RDF::URI.new("http://bioportal.bioontology.org/ontologies/msotes#myAuthor")
       assert (ont_submission.valid?)
       ont_submission.save
-      assert_equal true, ont_submission.exist?(reload=true)
-      parse_options = {process_rdf: true, extract_metadata: false}
+      assert_equal true, ont_submission.exist?(reload = true)
+      parse_options = { process_rdf: true, extract_metadata: false }
       begin
         tmp_log = Logger.new(TestLogFile.new)
         ont_submission.process_submission(tmp_log, parse_options)
@@ -177,8 +177,8 @@ def init_test_ontology_msotest(acr)
       end
 
       roots = ont_submission.roots
-      #class99 is equivalent to intersection of ...
-      #it shouldnt be at the root
+      # class99 is equivalent to intersection of ...
+      # it shouldnt be at the root
       if acr["OBSPROPSDISC"]
         assert roots.length == 5
       elsif acr["OBSPROPS"]
@@ -189,13 +189,13 @@ def init_test_ontology_msotest(acr)
         assert roots.length == 6
       end
       assert !roots.map { |x| x.id.to_s }
-              .include?("http://bioportal.bioontology.org/ontologies/msotes#class99")
+                   .include?("http://bioportal.bioontology.org/ontologies/msotes#class99")
 
-      #test to see if custom properties were saved in the graph
-      custom_props = [ "http://bioportal.bioontology.org/ontologies/msotes#myPrefLabel",
-        "http://bioportal.bioontology.org/ontologies/msotes#myDefinition",
-        "http://bioportal.bioontology.org/ontologies/msotes#mySynonymLabel",
-        "http://bioportal.bioontology.org/ontologies/msotes#myAuthor"]
+      # test to see if custom properties were saved in the graph
+      custom_props = ["http://bioportal.bioontology.org/ontologies/msotes#myPrefLabel",
+                      "http://bioportal.bioontology.org/ontologies/msotes#myDefinition",
+                      "http://bioportal.bioontology.org/ontologies/msotes#mySynonymLabel",
+                      "http://bioportal.bioontology.org/ontologies/msotes#myAuthor"]
       custom_props.each do |p|
         query = <<eos
 SELECT * WHERE {
@@ -205,7 +205,7 @@ def init_test_ontology_msotest(acr)
 eos
         count = 0
         Goo.sparql_query_client.query(query).each_solution do |sol|
-          if (sol[:super].to_s.include? "skos") || (sol[:super].to_s.include? "elements") ||  (sol[:super].to_s.include? "metadata")
+          if (sol[:super].to_s.include? "skos") || (sol[:super].to_s.include? "elements") || (sol[:super].to_s.include? "metadata")
             count += 1
           end
         end
@@ -230,7 +230,7 @@ def start_server
       server_thread = Thread.new do
         Rack::Server.start(
           app: lambda do |e|
-            [200, {'Content-Type' => 'text/plain'}, ['test file']]
+            [200, { 'Content-Type' => 'text/plain' }, ['test file']]
           end,
           Port: server_port
         )
@@ -241,6 +241,7 @@ def start_server
     end
 
     private
+
     def port_in_use?(port)
       begin
         server = TCPServer.new(port)

From bc64d9054137f763d0e78a5e0b8b30d75834e00c Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Wed, 12 Feb 2025 04:26:50 +0100
Subject: [PATCH 10/66] Fix: Add default serialization attributes for agents
 (#190)

* add default serialization attributes for agents

* Remove affiliations from default serialized attributes to improve performance
---
 lib/ontologies_linked_data/models/agents/agent.rb      | 2 ++
 lib/ontologies_linked_data/models/agents/identifier.rb | 2 ++
 2 files changed, 4 insertions(+)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 24601748..ab7f8daa 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -19,6 +19,8 @@ class Agent < LinkedData::Models::Base
       embed :identifiers, :affiliations
       embed_values affiliations: LinkedData::Models::Agent.goo_attrs_to_load + [identifiers: LinkedData::Models::AgentIdentifier.goo_attrs_to_load]
       serialize_methods :usages
+      
+      serialize_default :name, :agentType, :acronym, :email, :homepage, :identifiers
 
       write_access :creator
       access_control_load :creator
diff --git a/lib/ontologies_linked_data/models/agents/identifier.rb b/lib/ontologies_linked_data/models/agents/identifier.rb
index 5e7d77cc..3a3f9cc0 100644
--- a/lib/ontologies_linked_data/models/agents/identifier.rb
+++ b/lib/ontologies_linked_data/models/agents/identifier.rb
@@ -13,6 +13,8 @@ class AgentIdentifier < LinkedData::Models::Base
 
       embedded true
 
+      serialize_default  :notation, :schemaAgency
+    
       write_access :creator
       access_control_load :creator
 

From 09b5de3b25f5b27019532361886b55bb36864c65 Mon Sep 17 00:00:00 2001
From: Syphax bouazzouni <gs_bouazzouni@esi.dz>
Date: Fri, 14 Feb 2025 05:29:11 +0100
Subject: [PATCH 11/66] Revert "Fix: Add default serialization attributes for
 agents (#190)" (#193)

This reverts commit bc64d9054137f763d0e78a5e0b8b30d75834e00c.
---
 lib/ontologies_linked_data/models/agents/agent.rb      | 2 --
 lib/ontologies_linked_data/models/agents/identifier.rb | 2 --
 2 files changed, 4 deletions(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index ab7f8daa..24601748 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -19,8 +19,6 @@ class Agent < LinkedData::Models::Base
       embed :identifiers, :affiliations
       embed_values affiliations: LinkedData::Models::Agent.goo_attrs_to_load + [identifiers: LinkedData::Models::AgentIdentifier.goo_attrs_to_load]
       serialize_methods :usages
-      
-      serialize_default :name, :agentType, :acronym, :email, :homepage, :identifiers
 
       write_access :creator
       access_control_load :creator
diff --git a/lib/ontologies_linked_data/models/agents/identifier.rb b/lib/ontologies_linked_data/models/agents/identifier.rb
index 3a3f9cc0..5e7d77cc 100644
--- a/lib/ontologies_linked_data/models/agents/identifier.rb
+++ b/lib/ontologies_linked_data/models/agents/identifier.rb
@@ -13,8 +13,6 @@ class AgentIdentifier < LinkedData::Models::Base
 
       embedded true
 
-      serialize_default  :notation, :schemaAgency
-    
       write_access :creator
       access_control_load :creator
 

From 728ac871578d607d1c4e4e7a4f0800e8d263890f Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Sat, 15 Feb 2025 04:37:38 +0100
Subject: [PATCH 12/66] Fix: add paging by default when calling /artefacts
 (#192)

* add paging when getting all artefacts

* fix tests

* fix paging assertions

* remove total_pages from test

* remove test all artefacts
---
 .../models/mod/semantic_artefact.rb               | 15 ++++++---------
 test/models/mod/test_artefact.rb                  |  1 +
 2 files changed, 7 insertions(+), 9 deletions(-)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index 14f5aaa1..7c8c2328 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -190,20 +190,17 @@ def bring(*attributes)
                 end
             end
 
-            def self.all_artefacts(options = {})
-                onts = if options[:also_include_views]
-                        Ontology.where.to_a
-                    else
-                        Ontology.where.filter(Goo::Filter.new(:viewOf).unbound).include(:acronym).to_a
-                    end
-        
-                onts.map do |o|
+            def self.all_artefacts(attributes, page, pagesize)
+                all_count = Ontology.where.count
+                onts = Ontology.where.include(:acronym).page(page, pagesize).page_count_set(all_count).all
+                all_artefacts = onts.map do |o|
                     new.tap do |sa|
                         sa.ontology = o
                         sa.acronym = o.acronym
-                        sa.bring(*options[:includes]) if options[:includes]
+                        sa.bring(*attributes) if attributes
                     end
                 end
+                Goo::Base::Page.new(page, pagesize, all_count, all_artefacts)
             end
 
             def latest_distribution(status)
diff --git a/test/models/mod/test_artefact.rb b/test/models/mod/test_artefact.rb
index 8d254040..e9336531 100644
--- a/test/models/mod/test_artefact.rb
+++ b/test/models/mod/test_artefact.rb
@@ -63,6 +63,7 @@ def test_bring_attrs
         assert_equal r.analytics, ont.analytics
     end
 
+
     def test_latest_distribution
         create_test_ontology
         sa = LinkedData::Models::SemanticArtefact.find('STY')

From 6ec7a7250f0ebb44c807f4aee1ea5d2438dcb074 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Mon, 17 Feb 2025 09:34:31 +0100
Subject: [PATCH 13/66] Fix: hide private artefacts when getting all artefacts
 (#187)

* get only public ontologies

* add read_restriction_based_on based on ontology

* update Gemfile.lock

* fix tests

* update gemfile to use goo development branch
---
 Gemfile                                       |  2 +-
 Gemfile.lock                                  | 20 ++++++++++---------
 .../models/mod/semantic_artefact.rb           | 10 ++++++----
 .../mod/semantic_artefact_distribution.rb     |  5 ++++-
 test/models/test_class.rb                     | 10 ++++------
 5 files changed, 26 insertions(+), 21 deletions(-)

diff --git a/Gemfile b/Gemfile
index c6f36f2d..82592b99 100644
--- a/Gemfile
+++ b/Gemfile
@@ -41,7 +41,7 @@ group :development do
   gem 'rubocop', require: false
 end
 # NCBO gems (can be from a local dev path or from rubygems/git)
-gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'feature/migrate-ruby-3.2'
+gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'development'
 gem 'sparql-client', github: 'ontoportal-lirmm/sparql-client', branch: 'development'
 
 gem 'net-ftp'
diff --git a/Gemfile.lock b/Gemfile.lock
index e8f2516a..2415b8cd 100644
--- a/Gemfile.lock
+++ b/Gemfile.lock
@@ -1,7 +1,7 @@
 GIT
   remote: https://github.com/ontoportal-lirmm/goo.git
-  revision: dd3ea6c0f583c2044622a9f872a0bd18e898bb79
-  branch: feature/migrate-ruby-3.2
+  revision: e48a2d13a65cc2dd1c12d116cfc9da9061106861
+  branch: development
   specs:
     goo (0.0.2)
       addressable (~> 2.8)
@@ -102,7 +102,7 @@ GEM
       domain_name (~> 0.5)
     i18n (0.9.5)
       concurrent-ruby (~> 1.0)
-    json (2.9.1)
+    json (2.10.1)
     json-canonicalization (0.4.0)
     json-ld (3.2.5)
       htmlentities (~> 4.3)
@@ -120,7 +120,8 @@ GEM
       logger (~> 1.6)
     libxml-ruby (5.0.3)
     link_header (0.0.8)
-    logger (1.6.5)
+    lint_roller (1.1.0)
+    logger (1.6.6)
     macaddr (1.7.2)
       systemu (~> 2.6.5)
     mail (2.8.1)
@@ -147,7 +148,7 @@ GEM
       time
     net-http-persistent (4.0.5)
       connection_pool (~> 2.2)
-    net-imap (0.4.18)
+    net-imap (0.4.19)
       date
       net-protocol
     net-pop (0.1.2)
@@ -176,7 +177,7 @@ GEM
       method_source (~> 1.0)
     public_suffix (5.1.1)
     racc (1.8.1)
-    rack (2.2.10)
+    rack (2.2.11)
     rack-test (2.2.0)
       rack (>= 1.3)
     rainbow (3.1.1)
@@ -210,9 +211,10 @@ GEM
     rexml (3.4.0)
     rsolr (1.1.2)
       builder (>= 2.1.2)
-    rubocop (1.71.2)
+    rubocop (1.72.1)
       json (~> 2.3)
-      language_server-protocol (>= 3.17.0)
+      language_server-protocol (~> 3.17.0.2)
+      lint_roller (~> 1.1.0)
       parallel (~> 1.10)
       parser (>= 3.3.0.2)
       rainbow (>= 2.2.2, < 4.0)
@@ -251,7 +253,7 @@ GEM
     unicode-emoji (4.0.4)
     uuid (2.3.9)
       macaddr (~> 1.0)
-    webmock (3.24.0)
+    webmock (3.25.0)
       addressable (>= 2.8.0)
       crack (>= 0.3.2)
       hashdiff (>= 0.4.0, < 2.0.0)
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index 7c8c2328..17388c20 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -117,7 +117,7 @@ def attribute_mapped(name, **options)
             attribute_mapped :metrics, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :metrics}
 
 
-            attribute :ontology, type: :ontology
+            attribute :ontology, type: :ontology, enforce: [:existence]
             
             links_load :acronym
             link_to LinkedData::Hypermedia::Link.new("distributions", lambda {|s| "artefacts/#{s.acronym}/distributions"}, LinkedData::Models::SemanticArtefactDistribution.type_uri),
@@ -132,7 +132,9 @@ def attribute_mapped(name, **options)
                     LinkedData::Hypermedia::Link.new("collection", lambda {|s| "artefacts/#{s.acronym}/collections"}, LinkedData::Models::SKOS::Collection.uri_type),
                     LinkedData::Hypermedia::Link.new("labels", lambda {|s| "artefacts/#{s.acronym}/labels"}, LinkedData::Models::SKOS::Label.uri_type)
 
-            
+            # Access control
+            read_restriction_based_on ->(artefct) { artefct.ontology }
+
             serialize_default :acronym, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
                               :license, :rightsHolder, :description, :landingPage, :keyword, :bibliographicCitation, :contactPoint,
                               :contributor, :publisher, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, 
@@ -157,7 +159,7 @@ def self.type_uri
             end
 
             def self.find(artefact_id)
-                ont = Ontology.find(artefact_id).include(:acronym).first
+                ont = Ontology.find(artefact_id).include(:acronym, :viewingRestriction, :administeredBy, :acl).first
                 return nil unless ont
 
                 new.tap do |sa|
@@ -192,7 +194,7 @@ def bring(*attributes)
 
             def self.all_artefacts(attributes, page, pagesize)
                 all_count = Ontology.where.count
-                onts = Ontology.where.include(:acronym).page(page, pagesize).page_count_set(all_count).all
+                onts = Ontology.where.include(:acronym, :viewingRestriction, :administeredBy, :acl).page(page, pagesize).page_count_set(all_count).all
                 all_artefacts = onts.map do |o|
                     new.tap do |sa|
                         sa.ontology = o
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
index 03583c66..e613a82a 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
@@ -60,6 +60,9 @@ def attribute_mapped(name, **options)
 
             # Attr special to SemanticArtefactDistribution
             attribute :submission, type: :ontology_submission
+
+            # Access control
+            read_restriction_based_on ->(artefct_distribution) { artefct_distribution.submission.ontology }
             
             serialize_default :distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, 
                               :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, 
@@ -80,7 +83,7 @@ def self.distribution_id_generator(ss)
             def initialize(sub)
                 super()
                 @submission = sub
-                @submission.bring(*[:submissionId, :ontology=>[:acronym]])
+                @submission.bring(*[:submissionId, :ontology=>[:acronym, :administeredBy, :acl, :viewingRestriction]])
                 @distributionId = sub.submissionId
             end
 
diff --git a/test/models/test_class.rb b/test/models/test_class.rb
index bd69bc33..1a37c7a8 100644
--- a/test/models/test_class.rb
+++ b/test/models/test_class.rb
@@ -42,9 +42,8 @@ def test_class_parents
     assert_equal(cls.parents[0].submission, os)
 
     # transitive
-    assert_raises ArgumentError do
-      cls.bring(:ancestors)
-    end
+    cls.bring(:ancestors)
+    assert_includes cls.loaded_attributes.to_a, :ancestors
     ancestors = cls.ancestors.dup
     ancestors.each do |a|
       assert !a.submission.nil?
@@ -83,9 +82,8 @@ def test_class_children
     assert_equal(cls.children[0].submission, os)
 
     # transitive
-    assert_raises ArgumentError do
-      cls.bring(:descendants)
-    end
+    cls.bring(:descendants)
+    assert_includes cls.loaded_attributes.to_a, :descendants
     descendants = cls.descendants.dup
     descendants.map! { |a| a.id.to_s }
     data_descendants = ["http://bioportal.bioontology.org/ontologies/msotes#class_5",

From f7498ac4fe44fdb2330301dbb540ba802ebf555a Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Mon, 17 Feb 2025 10:02:47 +0100
Subject: [PATCH 14/66] Feature: Add SemanticArtefactCatalog model (#183)

* add semantic catalog model

* define all the attributes in the catalog scheme

* use default attributes from the catalog scheme yaml file

* fix catalog tests

* ajouter calucaltion of some computed attributes

* Fixing the SemanticArtefactCatalog model structure and code

* update the SemanticArtefactCatalog model and scheme

* remove default values from fundedBy and federated_portals

* fix tests in test_class.rb

* make the ui_host a url

* remove https from the ui_host config

---------

Co-authored-by: Syphax bouazzouni <gs_bouazzouni@esi.dz>
---
 config/schemes/semantic_artefact_catalog.yml  | 677 ++++++++++++++++++
 lib/ontologies_linked_data/models/base.rb     |   2 +-
 lib/ontologies_linked_data/models/metric.rb   |  14 +
 .../models/mod/semantic_artefact_catalog.rb   | 285 ++++++++
 test/models/mod/test_artefact_catalog.rb      |  37 +
 test/models/test_class.rb                     |   1 -
 6 files changed, 1014 insertions(+), 2 deletions(-)
 create mode 100644 config/schemes/semantic_artefact_catalog.yml
 create mode 100644 lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
 create mode 100644 test/models/mod/test_artefact_catalog.rb

diff --git a/config/schemes/semantic_artefact_catalog.yml b/config/schemes/semantic_artefact_catalog.yml
new file mode 100644
index 00000000..06ced74e
--- /dev/null
+++ b/config/schemes/semantic_artefact_catalog.yml
@@ -0,0 +1,677 @@
+###Template
+
+#propname:
+#  display: "general" / 
+#  label: ""
+#  helpText: ""
+#  example: ''
+#  description: [ 
+#    "ACRO: description.",
+#    "ACRO: description." ]
+#  extractedMetadata: true / false
+#  enforcedValues: {
+#    "..",
+#    ".." }
+#  metadataMappings: [ "ns:propname", ".." ]
+#  default: ""
+
+acronym:
+  display: "general" 
+  label: "Acronym"
+  helpText: "The Acronym of the catalog which is described by these metadata."
+  example: 'agroportal'
+  default: 'OntoPortal'
+
+title:
+  display: "general" 
+  label: "Title"
+  helpText: "The Title of the catalog which is described by these metadata."
+  example: 'Title example'
+  default: 'OntoPortal'
+
+color:
+  display: "general"
+  label: "Color"
+  helpText: "The Main color of the catalog which is described by these metadata."
+  example: '#5499A3'
+  default: '#5499A3'
+
+description:
+  display: "description"
+  label: "Description"
+  helpText: "The description of the catalog which is described by these metadata."
+  example: 'Welcome to OntoPortal Appliance, your ontology repository for your ontologies'
+  default: 'Welcome to OntoPortal Appliance, your ontology repository for your ontologies'
+
+logo:
+  display: "general"
+  label: "Logo"
+  helpText: "The logo of the catalog which is described by these metadata."
+  example: 'https://ontoportal.org/images/logo.png'
+  default: https://ontoportal.org/images/logo.png
+
+versionInfo:
+  display: "general"
+  label: "Version info"
+  helpText: "Version information."
+  example: 'v1.0.1'
+  default: 'v3.0.2'
+
+fundedBy:
+  display: "general"
+  label: "Funded By"
+  helpText: "Founder of the catalog"
+  example: ''
+  enforcedValues: [img_src: "", url: "" ]
+  default: []
+
+federated_portals:
+  display: "general"
+  label: "Federated Portals"
+  helpText: "The Federated portal"
+  example: ''
+  enforcedValues: [name: "", api: "", ui: "", apikey: "", color: "" ]
+  default: []
+
+homepage:
+  display: "general"
+  label: "Homepage"
+  helpText: "The homepage URL of the catalog."
+  example: "https://example.com"
+
+identifier:
+  display: "general"
+  label: "Identifier"
+  helpText: "The identifier URL of the catalog."
+  example: "https://example.com/id"
+  default: null
+
+status:
+  display: "general"
+  label: "Status"
+  helpText: "The status of the catalog."
+  example: "alpha"
+  default: alpha
+
+deprecated:
+  display: "general"
+  label: "Deprecated"
+  helpText: "Whether the catalog is deprecated."
+  example: false
+  default: false
+
+language:
+  display: "general"
+  label: "Language"
+  helpText: "The language of the catalog."
+  example: "English"
+  default:
+    - English
+
+accessRights:
+  display: "licensing"
+  label: "Access Rights"
+  helpText: "Access rights of the catalog."
+  example: "private"
+  default: "public"
+
+license:
+  display: "licensing"
+  label: "License"
+  helpText: "License URL of the catalog."
+  example: "https://example.com/license"
+  default: "https://opensource.org/licenses/BSD-2-Clause"
+
+useGuidelines:
+  display: "general"
+  label: "Use Guidelines"
+  helpText: "Guidelines for using the catalog."
+  example: ""
+  default: null
+
+morePermissions:
+  display: "general"
+  label: "More Permissions"
+  helpText: "Additional permissions for the catalog."
+  example: ""
+  default: null
+
+rightsHolder:
+  display: "general"
+  label: "Rights Holder"
+  helpText: "The rights holder of the catalog."
+  example: ""
+  default: null
+
+landingPage:
+  display: "general"
+  label: "Landing Page"
+  helpText: "Landing page URL of the catalog."
+  example: "https://agroportal.lirmm.fr/"
+
+comment:
+  display: "general"
+  label: "Comment"
+  helpText: "Comments on the catalog."
+  example: ["comment 1", "comment 2"]
+  default: []
+
+keyword:
+  display: "general"
+  label: "Keyword"
+  helpText: "Keywords associated with the catalog."
+  example: ["keyword1", "keyword2"]
+  default: []
+
+alternative:
+  display: "general"
+  label: "Alternative"
+  helpText: "Alternative titles or names for the catalog."
+  example: ["alternative 1", "alternative 2"]
+  default: []
+
+hiddenLabel:
+  display: "general"
+  label: "Hidden Label"
+  helpText: "Labels hidden from users."
+  example: ["hiddenLabel 1", "hiddenLabel 2"]
+  default: []
+
+abstract:
+  display: "general"
+  label: "Abstract"
+  helpText: "Abstract or summary of the catalog."
+  example: "This catalog is about..."
+  default: ""
+
+bibliographicCitation:
+  display: "general"
+  label: "Bibliographic Citation"
+  helpText: "Citation information for the catalog."
+  example: ["Citation 1", "Citation 2"]
+  default: []
+
+created:
+  display: "general"
+  label: "Created Date"
+  helpText: "The creation date of the catalog."
+  example: "2025-01-01"
+  default: null
+
+modified:
+  display: "general"
+  label: "Modified Date"
+  helpText: "The last modification date of the catalog."
+  example: "2025-01-02"
+
+curatedOn:
+  display: "general"
+  label: "Curated On"
+  helpText: "The date the catalog was curated."
+  example: "2025-01-03"
+  default: null
+
+contactPoint:
+  display: "general"
+  label: "Contact Point"
+  helpText: "Contact information for the catalog."
+  example: []
+  default: []
+
+creator:
+  display: "general"
+  label: "Creator"
+  helpText: "The creator of the catalog."
+  example: []
+  default: []
+
+contributor:
+  display: "general"
+  label: "Contributor"
+  helpText: "Contributors to the catalog."
+  example: []
+  default: []
+
+curatedBy:
+  display: "general"
+  label: "Curated By"
+  helpText: "The person or organization that curated the catalog."
+  example: []
+  default: []
+
+translator:
+  display: "general"
+  label: "Translator"
+  helpText: "Translator information for the catalog."
+  example: []
+  default: []
+
+publisher:
+  display: "general"
+  label: "Publisher"
+  helpText: "The publisher of the catalog."
+  example: []
+  default: []
+
+endorsedBy:
+  display: "general"
+  label: "Endorsed By"
+  helpText: "Entities endorsing the catalog."
+  example: []
+  default: []
+
+group:
+  display: "general"
+  label: "Group"
+  helpText: "Groups associated with the catalog."
+  example: "Group 1"
+  default: ""
+
+usedInProject:
+  display: "general"
+  label: "Used in Project"
+  helpText: "Portal url /projects, the projects that are in the catalog."
+  example: null
+
+audience:
+  display: "general"
+  label: "Audience"
+  helpText: "Target audience for the catalog."
+  example: "Audience 1"
+  default: ""
+
+analytics:
+  display: "general"
+  label: "Analytics"
+  helpText: "url to /analytics, the analytics data related to the catalog."
+  example: null
+
+repository:
+  display: "general"
+  label: "Repository"
+  helpText: "Repository information for the catalog."
+  example: ""
+  default: ""
+
+bugDatabase:
+  display: "general"
+  label: "Bug Database"
+  helpText: "Bug database information for the catalog."
+  example: ""
+  default: ""
+
+mailingList:
+  display: "general"
+  label: "Mailing List"
+  helpText: "Mailing list for the catalog."
+  example: null
+  default: null
+
+toDoList:
+  display: "general"
+  label: "To-Do List"
+  helpText: "To-Do list for the catalog."
+  example: []
+  default: []
+
+award:
+  display: "general"
+  label: "Award"
+  helpText: "Awards related to the catalog."
+  example: []
+  default: []
+
+knownUsage:
+  display: "general"
+  label: "Known Usage"
+  helpText: "Known usage of the catalog."
+  example: []
+  default: []
+
+subject:
+  display: "general"
+  label: "Subject"
+  helpText: "The subject of the catalog."
+  example: []
+  default: []
+
+coverage:
+  display: "general"
+  label: "Coverage"
+  helpText: "Coverage details of the catalog."
+  example: []
+  default: []
+
+example:
+  display: "general"
+  label: "Example"
+  helpText: "Examples related to the catalog."
+  example: []
+  default: []
+
+createdWith:
+  display: "general"
+  label: "Created With"
+  helpText: "The tool or method used to create the catalog."
+  example: []
+  default: []
+
+accrualMethod:
+  display: "general"
+  label: "Accrual Method"
+  helpText: "The accrual method for the catalog."
+  example: []
+  default: []
+
+accrualPeriodicity:
+  display: "general"
+  label: "Accrual Periodicity"
+  helpText: "The periodicity of data accrual for the catalog."
+  example: []
+  default: []
+
+accrualPolicy:
+  display: "general"
+  label: "Accrual Policy"
+  helpText: "The accrual policy for the catalog."
+  example: []
+  default: []
+
+wasGeneratedBy:
+  display: "general"
+  label: "Was Generated By"
+  helpText: "The process or entity that generated the catalog."
+  example: []
+  default: []
+
+accessURL:
+  display: "general"
+  label: "Access URL"
+  helpText: "the api access URL for the catalog."
+  example: null
+
+uriLookupEndpoint:
+  display: "general"
+  label: "URI Lookup Endpoint"
+  helpText: "Portal url /search, the URI lookup endpoint for the catalog."
+  example: null
+
+openSearchDescription:
+  display: "general"
+  label: "Open Search Description"
+  helpText: "Portal url /search, the description of open search functionality."
+  example: null
+
+source:
+  display: "general"
+  label: "Source"
+  helpText: "The source of the catalog data."
+  example: []
+  default: []
+
+endpoint:
+  display: "general"
+  label: "Endpoint"
+  helpText: "The SPARQL url endpoint of the catalog."
+  example: null
+
+isPartOf:
+  display: "general"
+  label: "Is Part Of"
+  helpText: "Indicates if the catalog is part of a larger collection."
+  example: []
+  default: []
+
+hasPart:
+  display: "general"
+  label: "Has Part"
+  helpText: "Indicates if the catalog has subparts."
+  example: []
+  default: []
+
+relation:
+  display: "general"
+  label: "Relation"
+  helpText: "Related resources or entities to the catalog."
+  example: "relation 1"
+  default: ""
+
+uriRegexPattern:
+  display: "general"
+  label: "URI Regex Pattern"
+  helpText: "Regex pattern for URIs in the catalog."
+  example: "^[a-zA-Z0-9]+$"
+
+preferredNamespaceUri:
+  display: "general"
+  label: "Preferred Namespace URI"
+  helpText: "The preferred namespace URI for the catalog."
+  example: ""
+
+preferredNamespacePrefix:
+  display: "general"
+  label: "Preferred Namespace Prefix"
+  helpText: "The preferred namespace prefix for the catalog."
+  example: ""
+
+metadataVoc:
+  display: "general"
+  label: "Metadata Vocabulary"
+  helpText: "Metadata vocabulary used by the catalog."
+  example: "Dublin Core"
+
+changes:
+  display: "general"
+  label: "Changes"
+  helpText: "Change history of the catalog."
+  example: []
+  default: []
+
+associatedMedia:
+  display: "general"
+  label: "Associated Media"
+  helpText: "Media associated with the catalog."
+  example: []
+  default: []
+
+depiction:
+  display: "general"
+  label: "Depiction"
+  helpText: "Image or visual depiction of the catalog."
+  example: []
+  default: []
+
+hasPolicy:
+  display: "general"
+  label: "Has Policy"
+  helpText: "Policies associated with the catalog."
+  example: "Usage Policy"
+  default: ""
+
+isReferencedBy:
+  display: "general"
+  label: "Is Referenced By"
+  helpText: "Entities or resources referencing the catalog."
+  example: []
+  default: []
+
+funding:
+  display: "general"
+  label: "Funding"
+  helpText: "Funding information for the catalog."
+  example: []
+  default: []
+
+qualifiedAttribution:
+  display: "general"
+  label: "Qualified Attribution"
+  helpText: "Attribution information for the catalog."
+  example: []
+  default: []
+
+publishingPrinciples:
+  display: "general"
+  label: "Publishing Principles"
+  helpText: "Publishing principles for the catalog."
+  example: []
+  default: []
+
+qualifiedRelation:
+  display: "general"
+  label: "Qualified Relation"
+  helpText: "Qualified relationships for the catalog."
+  example: []
+  default: []
+
+fairScore:
+  display: "general"
+  label: "FAIR Score"
+  helpText: "The FAIR score of the catalog."
+  example: null
+  default: null
+
+featureList:
+  display: "general"
+  label: "Feature List"
+  helpText: "Features of the catalog."
+  example: []
+
+supportedSchema:
+  display: "general"
+  label: "Supported Schema"
+  helpText: "Supported schemas by the catalog."
+  example: []
+
+conformsTo:
+  display: "general"
+  label: "Conforms To"
+  helpText: "Standards or specifications the catalog conforms to."
+  example: "https://w3id.org/mod"
+
+catalog:
+  display: "general"
+  label: "Catalog"
+  helpText: "Catalog associated with this entry."
+  example: []
+  default: []
+
+dataset:
+  display: "general"
+  label: "Dataset"
+  helpText: "/artefacts, the list of datasets in the catalog."
+  example: null
+
+service:
+  display: "general"
+  label: "Service"
+  helpText: "Services offered by the catalog."
+  example: []
+
+record:
+  display: "general"
+  label: "Record"
+  helpText: "/records, the list of records maintained in the catalog."
+  example: null
+
+themeTaxonomy:
+  display: "general"
+  label: "Theme Taxonomy"
+  helpText: "Taxonomy themes of the catalog."
+  example: "UNESCO Thesaurus"
+  default: "UNESCO Thesaurus"
+
+distribution:
+  display: "general"
+  label: "Distribution"
+  helpText: "/distribution, the list of distribution information for the catalog."
+  example: null
+
+numberOfArtefacts:
+  display: "general"
+  label: "Number of Artefacts"
+  helpText: "The total number of artefacts in the catalog."
+  example: 10
+
+metrics:
+  display: "general"
+  label: "Metrics"
+  helpText: "The link to the metrics object associated with the catalog."
+  example: null
+
+numberOfClasses:
+  display: "general"
+  label: "Number of Classes"
+  helpText: "The total number of classes in the catalog."
+  example: 100
+
+numberOfIndividuals:
+  display: "general"
+  label: "Number of Individuals"
+  helpText: "The total number of individuals in the catalog."
+  example: 100
+
+numberOfProperties:
+  display: "general"
+  label: "Number of Properties"
+  helpText: "The total number of properties in the catalog."
+  example: 100
+
+numberOfAxioms:
+  display: "general"
+  label: "Number of Axioms"
+  helpText: "The total number of axioms in the catalog."
+  example: 100
+
+numberOfObjectProperties:
+  display: "general"
+  label: "Number of Object Properties"
+  helpText: "The total number of object properties in the catalog."
+  example: 100
+
+numberOfDataProperties:
+  display: "general"
+  label: "Number of Data Properties"
+  helpText: "The total number of data properties in the catalog."
+  example: 100
+
+numberOfLabels:
+  display: "general"
+  label: "Number of Labels"
+  helpText: "The total number of labels in the catalog."
+  example: 100
+
+numberOfDeprecated:
+  display: "general"
+  label: "Number of Deprecated"
+  helpText: "The total number of deprecated items in the catalog."
+  example: 100
+
+numberOfUsingProjects:
+  display: "general"
+  label: "Number of Using Projects"
+  helpText: "The total number of projects using this catalog."
+  example: 100
+
+numberOfEndorsements:
+  display: "general"
+  label: "Number of Endorsements"
+  helpText: "The total number of endorsements for the catalog."
+  example: 100
+
+numberOfMappings:
+  display: "general"
+  label: "Number of Mappings"
+  helpText: "The total number of mappings in the catalog."
+  example: 100
+
+numberOfUsers:
+  display: "general"
+  label: "Number of Users"
+  helpText: "The total number of users interacting with the catalog."
+  example: 100
+
+numberOfAgents:
+  display: "general"
+  label: "Number of Agents"
+  helpText: "The total number of agents associated with the catalog."
+  example: 100
diff --git a/lib/ontologies_linked_data/models/base.rb b/lib/ontologies_linked_data/models/base.rb
index 9c2b330d..8f3652b0 100644
--- a/lib/ontologies_linked_data/models/base.rb
+++ b/lib/ontologies_linked_data/models/base.rb
@@ -44,7 +44,7 @@ def self.goo_attrs_to_load(attributes = [], level = 0)
         # Get attributes, either provided, all, or default
         default_attrs = if !attributes.empty?
                           if attributes.first == :all
-                            (self.attributes + hypermedia_settings[:serialize_default]).uniq
+                            (self.attributes(:all) + hypermedia_settings[:serialize_default]).uniq
                           else
                             attributes - hypermedia_settings[:serialize_never]
                           end
diff --git a/lib/ontologies_linked_data/models/metric.rb b/lib/ontologies_linked_data/models/metric.rb
index e3950efb..65688db7 100644
--- a/lib/ontologies_linked_data/models/metric.rb
+++ b/lib/ontologies_linked_data/models/metric.rb
@@ -20,6 +20,20 @@ class Metric < LinkedData::Models::Base
       attribute :numberOfAxioms, namespace: :omv, type: :integer
       attribute :entities, namespace: :void, type: :integer
 
+      attribute :numberOfNotes, namespace: :mod, type: :integer
+      attribute :numberOfUsingProjects, namespace: :mod, type: :integer
+      attribute :numberOfEnsorments, namespace: :mod, type: :integer
+      attribute :numberOfEvaluations, namespace: :mod, type: :integer
+      attribute :numberOfAgents, namespace: :mod, type: :integer
+      attribute :numberOfObjectProperties, namespace: :mod, type: :integer
+      attribute :numberOfDataProperties, namespace: :mod, type: :integer
+      attribute :numberOfLabels, namespace: :mod, type: :integer
+      attribute :numberOfDeprecated, namespace: :mod, type: :integer
+      attribute :classesWithNoLabel, namespace: :mod, type: :integer
+      attribute :classesWithNoAuthorMetadata, namespace: :mod, type: :integer
+      attribute :classesWithNoDateMetadata, namespace: :mod, type: :integer
+      attribute :numberOfMappings, namespace: :mod, type: :integer
+
       cache_timeout 14400 # 4 hours
 
       # Hypermedia links
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
new file mode 100644
index 00000000..2f57ed7f
--- /dev/null
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -0,0 +1,285 @@
+require 'yaml'
+
+module LinkedData
+    module Models
+        class SemanticArtefactCatalog < LinkedData::Models::Base
+
+
+            model :SemanticArtefactCatalog, namespace: :mod, scheme: File.join(__dir__, '../../../../config/schemes/semantic_artefact_catalog.yml'),
+                                                            name_with: ->(s) { RDF::URI.new(LinkedData.settings.id_url_prefix) }
+
+
+            attribute :acronym, namespace: :omv, enforce: [:unique, :string]
+            attribute :title, namespace: :dcterms, enforce: [:string]
+            attribute :color, enforce: [:string, :valid_hash_code]
+            attribute :description, namespace: :dcterms, enforce: [:string]
+            attribute :versionInfo, namespace: :owl, enforce: [:string]
+            attribute :identifier, namespace: :dcterms, enforce: [:string]
+            attribute :status, namespace: :mod, enforce: [:string]
+            attribute :accessRights, namespace: :dcterms, enforce: [:string]
+            attribute :useGuidelines, namespace: :cc, enforce: [:string]
+            attribute :morePermissions, namespace: :cc, enforce: [:string]
+            attribute :abstract, namespace: :dcterms, enforce: [:string]
+            attribute :group, namespace: :mod, enforce: [:string]
+            attribute :audience, namespace: :dcterms, enforce: [:string]
+            attribute :repository, namespace: :doap, enforce: [:string]
+            attribute :bugDatabase, namespace: :doap, enforce: [:string]
+            attribute :relation, namespace: :dcterms, enforce: [:string]
+            attribute :hasPolicy, namespace: :mod, enforce: [:string]
+            attribute :themeTaxonomy, namespace: :mod, enforce: [:string]
+            
+            attribute :created, namespace: :dcterms, enforce: [:date]
+            attribute :curatedOn, namespace: :pav, enforce: [:date]
+            
+            attribute :deprecated, namespace: :owl, enforce: [:boolean]
+            
+            attribute :homepage, namespace: :foaf, enforce: [:url], default: ->(s) { RDF::URI("http://#{LinkedData.settings.ui_host}") }
+            attribute :logo, namespace: :foaf, enforce: [:url]
+            attribute :license, namespace: :dcterms, enforce: [:url]
+            attribute :mailingList, namespace: :mod, enforce: [:url]
+            attribute :fairScore, namespace: :mod, enforce: [:url]
+            
+            attribute :federated_portals, enforce: [:list]
+            attribute :fundedBy, namespace: :foaf, enforce: [:list]
+            attribute :language, namespace: :dcterms, enforce: [:list]
+            attribute :comment, namespace: :rdfs, enforce: [:list]
+            attribute :keyword, namespace: :dcat, enforce: [:list]
+            attribute :alternative, namespace: :dcterms, enforce: [:list]
+            attribute :hiddenLabel, namespace: :skos, enforce: [:list]
+            attribute :bibliographicCitation, namespace: :dcterms, enforce: [:list]
+            attribute :toDoList, namespace: :mod, enforce: [:list]
+            attribute :award, namespace: :schema, enforce: [:list]
+            attribute :knownUsage, namespace: :mod, enforce: [:list]
+            attribute :subject, namespace: :dcterms, enforce: [:list]
+            attribute :coverage, namespace: :dcterms, enforce: [:list]
+            attribute :example, namespace: :vann, enforce: [:list]
+            attribute :createdWith, namespace: :pav, enforce: [:list]
+            attribute :accrualMethod, namespace: :dcterms, enforce: [:list]
+            attribute :accrualPeriodicity, namespace: :dcterms, enforce: [:list]
+            attribute :accrualPolicy, namespace: :dcterms, enforce: [:list]
+            attribute :wasGeneratedBy, namespace: :prov, enforce: [:list]
+            attribute :source, namespace: :dcterms, enforce: [:list]
+            attribute :isPartOf, namespace: :dcterms, enforce: [:list]
+            attribute :hasPart, namespace: :dcterms, enforce: [:list]
+            attribute :changes, namespace: :vann, enforce: [:list]
+            attribute :associatedMedia, namespace: :schema, enforce: [:list]
+            attribute :depiction, namespace: :foaf, enforce: [:list]
+            attribute :isReferencedBy, namespace: :mod, enforce: [:list]
+            attribute :funding, namespace: :mod, enforce: [:list]
+            attribute :qualifiedAttribution, namespace: :mod, enforce: [:list]
+            attribute :publishingPrinciples, namespace: :mod, enforce: [:list]
+            attribute :qualifiedRelation, namespace: :mod, enforce: [:list]
+            attribute :catalog, namespace: :mod, enforce: [:list]
+            
+            attribute :rightsHolder, namespace: :dcterms, type: %i[Agent]
+            attribute :contactPoint, namespace: :dcat, type: %i[list Agent]
+            attribute :creator, namespace: :dcterms, type: %i[list Agent]
+            attribute :contributor, namespace: :dcterms, type: %i[list Agent]
+            attribute :curatedBy, namespace: :pav, type: %i[list Agent]
+            attribute :translator, namespace: :schema, type: %i[list Agent]
+            attribute :publisher, namespace: :dcterms, type: %i[list Agent]
+            attribute :endorsedBy, namespace: :mod, type: %i[list Agent]
+
+            # Computed Values
+            attribute :landingPage, namespace: :dcat, enforce: [:url], handler: :ui_url
+            attribute :modified, namespace: :dcterms, enforce: [:date_time], handler: :modification_date
+            attribute :usedInProject, namespace: :mod, enforce: [:url], handler: :projects_url
+            attribute :analytics, namespace: :mod, enforce: [:url], handler: :analytics_url
+            attribute :accessURL, namespace: :dcat, enforce: [:url], handler: :api_url
+            attribute :uriLookupEndpoint, namespace: :void, enforce: [:url], handler: :search_url
+            attribute :openSearchDescription, namespace: :void, enforce: [:url], handler: :search_url
+            attribute :endpoint, namespace: :sd, enforce: [:url], handler: :sparql_url
+            attribute :uriRegexPattern, namespace: :void, enforce: [:url], handler: :set_uri_regex_pattern
+            attribute :preferredNamespaceUri, namespace: :vann, enforce: [:url], handler: :set_preferred_namespace_uri
+            attribute :preferredNamespacePrefix, namespace: :vann, enforce: [:url], handler: :set_preferred_namespace_prefix
+            attribute :metadataVoc, namespace: :mod, enforce: [:url], handler: :set_metadata_voc
+            attribute :featureList, namespace: :schema, enforce: [:url], handler: :set_feature_list
+            attribute :supportedSchema, namespace: :adms, enforce: [:url], handler: :set_supported_schema
+            attribute :conformsTo, namespace: :dcterms, enforce: [:url], handler: :mod_uri
+            
+            attribute :dataset, namespace: :dcat, enforce: [:url], handler: :artefacts_url
+            attribute :service, namespace: :dcat, enforce: [:url], handler: :get_services
+            attribute :record, namespace: :dcat, enforce: [:url], handler: :records_url
+            attribute :distribution, namespace: :dcat, enforce: [:url], handler: :distributions_url
+            attribute :numberOfArtefacts, namespace: :mod, enforce: [:integer], handler: :ontologies_count
+            attribute :metrics, namespace: :mod, enforce: [:url], handler: :metrics_url
+            attribute :numberOfClasses, namespace: :mod, enforce: [:integer], handler: :class_count
+            attribute :numberOfIndividuals, namespace: :mod, enforce: [:integer], handler: :individuals_count
+            attribute :numberOfProperties, namespace: :mod, enforce: [:integer], handler: :propoerties_count
+            attribute :numberOfAxioms, namespace: :mod, enforce: [:integer], handler: :axioms_counts
+            attribute :numberOfObjectProperties, namespace: :mod, enforce: [:integer], handler: :object_properties_counts
+            attribute :numberOfDataProperties, namespace: :mod, enforce: [:integer], handler: :data_properties_counts
+            attribute :numberOfLabels, namespace: :mod, enforce: [:integer], handler: :labels_counts
+            attribute :numberOfDeprecated, namespace: :mod, enforce: [:integer], handler: :deprecated_counts
+            attribute :numberOfUsingProjects, namespace: :mod, enforce: [:integer], handler: :using_projects_counts
+            attribute :numberOfEndorsements, namespace: :mod, enforce: [:integer], handler: :endorsements_counts
+            attribute :numberOfMappings, namespace: :mod, enforce: [:integer], handler: :mappings_counts
+            attribute :numberOfUsers, namespace: :mod, enforce: [:integer], handler: :users_counts
+            attribute :numberOfAgents, namespace: :mod, enforce: [:integer], handler: :agents_counts
+
+            serialize_default :acronym, :title, :color, :description, :logo, :fundedBy, :versionInfo, :homepage, :numberOfArtefacts, :federated_portals
+
+            def ontologies_count
+                LinkedData::Models::Ontology.where(viewingRestriction: 'public').count
+            end
+
+            def modification_date
+                nil
+            end
+
+            def ui_url
+                RDF::URI(LinkedData.settings.ui_host)
+            end
+
+            def api_url
+                RDF::URI(LinkedData.settings.ui_host)
+            end
+
+            def projects_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('projects')
+            end
+
+            def analytics_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('analytics')
+            end
+
+            def search_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('search')
+            end
+
+            def sparql_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('sparql')
+            end
+
+            def set_uri_regex_pattern
+                ""
+            end
+
+            def set_preferred_namespace_uri
+                ""
+            end
+            
+            def set_preferred_namespace_prefix
+                ""
+            end
+            
+            def set_metadata_voc
+                ""
+            end
+
+            def mod_uri
+                 RDF::URI("https://w3id.org/mod")
+            end
+            
+            def set_feature_list
+                []
+            end
+            
+            def set_supported_schema
+                []
+            end
+            
+            def metrics_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('metrics')
+            end
+
+            def artefacts_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('artefacts')
+            end
+
+            def get_services
+                []
+            end
+
+            def records_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('records')
+            end
+
+            def distributions_url
+                RDF::URI(LinkedData.settings.id_url_prefix).join('distributions')
+            end
+            
+            def class_count
+                calculate_attr_from_metrics(:classes)
+            end
+            
+            def individuals_count
+                calculate_attr_from_metrics(:individuals)
+            end
+            
+            def propoerties_count
+                calculate_attr_from_metrics(:properties)
+            end
+            
+            def axioms_counts
+                calculate_attr_from_metrics(:numberOfAxioms)
+            end
+            
+            def object_properties_counts
+                calculate_attr_from_metrics(:numberOfObjectProperties)
+            end
+            
+            def data_properties_counts
+                calculate_attr_from_metrics(:numberOfDataProperties)
+            end
+            
+            def labels_counts
+                calculate_attr_from_metrics(:numberOfLabels)
+            end
+            
+            def deprecated_counts
+                calculate_attr_from_metrics(:numberOfDeprecated)
+            end
+            
+            def using_projects_counts
+                calculate_attr_from_metrics(:numberOfUsingProjects)
+            end
+            
+            def endorsements_counts
+                calculate_attr_from_metrics(:numberOfEnsorments)
+            end
+            
+            def mappings_counts
+                calculate_attr_from_metrics(:numberOfMappings)
+            end
+            
+            def users_counts
+                LinkedData::Models::User.all.count
+            end
+            
+            def agents_counts
+                LinkedData::Models::Agent.all.count
+            end
+
+            def self.valid_hash_code(inst, attr)
+                inst.bring(attr) if inst.bring?(attr)
+                str = inst.send(attr)
+        
+                return if (/^#(?:[0-9a-fA-F]{3}|[0-9a-fA-F]{6})$/ === str)
+                [:valid_hash_code,
+                 "Invalid hex color code: '#{str}'. Please provide a valid hex code in the format '#FFF' or '#FFFFFF'."]
+            end
+
+            private
+
+            def calculate_attr_from_metrics(attr)
+                attr_to_get = attr.to_sym
+                submissions = LinkedData::Models::OntologySubmission.where.include(OntologySubmission.goo_attrs_to_load([attr_to_get]))
+                metrics_to_include = LinkedData::Models::Metric.goo_attrs_to_load([attr_to_get])
+                LinkedData::Models::OntologySubmission.where.models(submissions).include(metrics: metrics_to_include).all
+                somme = 0
+                submissions.each do |x|
+                    if x.metrics
+                      begin
+                        somme += x.metrics.send(attr_to_get)
+                      rescue
+                        next
+                      end
+                    end
+                end
+                somme
+            end
+
+        end
+    end
+end
\ No newline at end of file
diff --git a/test/models/mod/test_artefact_catalog.rb b/test/models/mod/test_artefact_catalog.rb
new file mode 100644
index 00000000..c091b582
--- /dev/null
+++ b/test/models/mod/test_artefact_catalog.rb
@@ -0,0 +1,37 @@
+require_relative "../../test_case"
+require_relative '../test_ontology_common'
+
+class TestArtefactCatalog < LinkedData::TestOntologyCommon
+
+  def test_create_artefact_catalog
+      sac = LinkedData::Models::SemanticArtefactCatalog.new
+      assert_equal LinkedData::Models::SemanticArtefactCatalog , sac.class
+      assert_equal "http://data.bioontology.org/", sac.id.to_s
+  end
+
+  def test_goo_attrs_to_load
+      all_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:all])
+      assert_equal LinkedData::Models::SemanticArtefactCatalog.attributes(:all), all_attrs
+
+      default_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([])
+      assert_equal [:acronym, :title, :color, :description, :logo, :fundedBy, :versionInfo, :homepage, :numberOfArtefacts, :federated_portals], default_attrs
+
+      specified_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:acronym, :title, :keyword, :featureList])
+      assert_equal [:acronym, :title, :keyword, :featureList], specified_attrs
+
+      computed_attrs = [:modified, :numberOfArtefacts, :metrics, :numberOfClasses, :numberOfIndividuals, :numberOfProperties,
+        :numberOfAxioms, :numberOfObjectProperties, :numberOfDataProperties, :numberOfLabels, :numberOfDeprecated,
+        :numberOfUsingProjects, :numberOfEndorsements, :numberOfMappings, :numberOfUsers, :numberOfAgents]
+      computed_attrs_bring = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load(computed_attrs)
+      assert_equal computed_attrs, computed_attrs_bring
+  end
+
+  def test_bring_attrs
+    sac = LinkedData::Models::SemanticArtefactCatalog.new
+    assert_equal true, sac.valid?
+    sac.save
+    all_attrs_to_bring = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:all])
+    sac.bring(*all_attrs_to_bring)
+    assert_equal all_attrs_to_bring, sac.loaded_attributes.to_a
+  end
+end
\ No newline at end of file
diff --git a/test/models/test_class.rb b/test/models/test_class.rb
index 1a37c7a8..540c56c2 100644
--- a/test/models/test_class.rb
+++ b/test/models/test_class.rb
@@ -90,7 +90,6 @@ def test_class_children
                         "http://bioportal.bioontology.org/ontologies/msotes#class2",
                         "http://bioportal.bioontology.org/ontologies/msotes#class_7"]
     assert descendants.sort == data_descendants.sort
-
     page = cls.retrieve_descendants(page = 2, size = 2)
     assert page.total_pages == 2
     assert page.prev_page == 1

From e7a0e8fe452d0adbc2bf564d94199416c213a86d Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Tue, 18 Feb 2025 13:33:58 +0100
Subject: [PATCH 15/66] optimize metric calculation

---
 .../models/mod/semantic_artefact_catalog.rb      | 16 ++--------------
 1 file changed, 2 insertions(+), 14 deletions(-)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index 2f57ed7f..33cbd1a7 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -263,21 +263,9 @@ def self.valid_hash_code(inst, attr)
             private
 
             def calculate_attr_from_metrics(attr)
-                attr_to_get = attr.to_sym
-                submissions = LinkedData::Models::OntologySubmission.where.include(OntologySubmission.goo_attrs_to_load([attr_to_get]))
-                metrics_to_include = LinkedData::Models::Metric.goo_attrs_to_load([attr_to_get])
-                LinkedData::Models::OntologySubmission.where.models(submissions).include(metrics: metrics_to_include).all
-                somme = 0
-                submissions.each do |x|
-                    if x.metrics
-                      begin
-                        somme += x.metrics.send(attr_to_get)
-                      rescue
-                        next
-                      end
-                    end
+                LinkedData::Models::Metric.where.include(attr).all.sum do |metric|
+                    metric.loaded_attributes.include?(attr) ? metric.send(attr).to_i : 0
                 end
-                somme
             end
 
         end

From e7446c0f121c7eaa3f2179dabf360f4a315eab08 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 21 Feb 2025 07:51:49 +0100
Subject: [PATCH 16/66] Fix: refactor catalog model code (#195)

* refactor catalog model code

* use Metric to optimize the metric calculation

* cache the metrics
---
 .../models/mod/semantic_artefact_catalog.rb   | 135 +++++-------------
 1 file changed, 37 insertions(+), 98 deletions(-)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index 33cbd1a7..02004105 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -96,59 +96,56 @@ class SemanticArtefactCatalog < LinkedData::Models::Base
             attribute :featureList, namespace: :schema, enforce: [:url], handler: :set_feature_list
             attribute :supportedSchema, namespace: :adms, enforce: [:url], handler: :set_supported_schema
             attribute :conformsTo, namespace: :dcterms, enforce: [:url], handler: :mod_uri
-            
             attribute :dataset, namespace: :dcat, enforce: [:url], handler: :artefacts_url
             attribute :service, namespace: :dcat, enforce: [:url], handler: :get_services
             attribute :record, namespace: :dcat, enforce: [:url], handler: :records_url
             attribute :distribution, namespace: :dcat, enforce: [:url], handler: :distributions_url
             attribute :numberOfArtefacts, namespace: :mod, enforce: [:integer], handler: :ontologies_count
             attribute :metrics, namespace: :mod, enforce: [:url], handler: :metrics_url
-            attribute :numberOfClasses, namespace: :mod, enforce: [:integer], handler: :class_count
-            attribute :numberOfIndividuals, namespace: :mod, enforce: [:integer], handler: :individuals_count
-            attribute :numberOfProperties, namespace: :mod, enforce: [:integer], handler: :propoerties_count
-            attribute :numberOfAxioms, namespace: :mod, enforce: [:integer], handler: :axioms_counts
-            attribute :numberOfObjectProperties, namespace: :mod, enforce: [:integer], handler: :object_properties_counts
-            attribute :numberOfDataProperties, namespace: :mod, enforce: [:integer], handler: :data_properties_counts
-            attribute :numberOfLabels, namespace: :mod, enforce: [:integer], handler: :labels_counts
-            attribute :numberOfDeprecated, namespace: :mod, enforce: [:integer], handler: :deprecated_counts
-            attribute :numberOfUsingProjects, namespace: :mod, enforce: [:integer], handler: :using_projects_counts
-            attribute :numberOfEndorsements, namespace: :mod, enforce: [:integer], handler: :endorsements_counts
-            attribute :numberOfMappings, namespace: :mod, enforce: [:integer], handler: :mappings_counts
             attribute :numberOfUsers, namespace: :mod, enforce: [:integer], handler: :users_counts
-            attribute :numberOfAgents, namespace: :mod, enforce: [:integer], handler: :agents_counts
 
+            METRICS_ATTRIBUTES = {
+                numberOfClasses: { mapped_to: :classes, handler: :class_count },
+                numberOfIndividuals: { mapped_to: :individuals, handler: :individuals_count },
+                numberOfProperties: { mapped_to: :properties, handler: :properties_count },
+                numberOfAxioms: :axioms_counts,
+                numberOfObjectProperties: :object_properties_counts,
+                numberOfDataProperties: :data_properties_counts,
+                numberOfLabels: :labels_counts,
+                numberOfDeprecated: :deprecated_counts,
+                numberOfUsingProjects: :using_projects_counts,
+                numberOfEndorsements: :endorsements_counts,
+                numberOfMappings: :mappings_counts,
+                numberOfAgents: :agents_counts
+            }
+              
+            METRICS_ATTRIBUTES.each do |attr_name, config|
+                handler = config.is_a?(Hash) ? config[:handler] : config
+                mapped_to = config.is_a?(Hash) ? config[:mapped_to] : attr_name
+                attribute attr_name, namespace: :mod, enforce: [:integer], handler: handler
+                define_method(handler) { calculate_attr_from_metrics(mapped_to) }
+            end
+              
             serialize_default :acronym, :title, :color, :description, :logo, :fundedBy, :versionInfo, :homepage, :numberOfArtefacts, :federated_portals
 
             def ontologies_count
                 LinkedData::Models::Ontology.where(viewingRestriction: 'public').count
             end
 
+            def users_counts
+                LinkedData::Models::User.all.count
+            end
+
             def modification_date
                 nil
             end
 
             def ui_url
-                RDF::URI(LinkedData.settings.ui_host)
+                RDF::URI("http://#{LinkedData.settings.ui_host}")
             end
 
             def api_url
-                RDF::URI(LinkedData.settings.ui_host)
-            end
-
-            def projects_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('projects')
-            end
-
-            def analytics_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('analytics')
-            end
-
-            def search_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('search')
-            end
-
-            def sparql_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('sparql')
+                RDF::URI(LinkedData.settings.id_url_prefix)
             end
 
             def set_uri_regex_pattern
@@ -178,77 +175,15 @@ def set_feature_list
             def set_supported_schema
                 []
             end
-            
-            def metrics_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('metrics')
-            end
-
-            def artefacts_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('artefacts')
-            end
 
             def get_services
                 []
             end
 
-            def records_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('records')
-            end
-
-            def distributions_url
-                RDF::URI(LinkedData.settings.id_url_prefix).join('distributions')
-            end
-            
-            def class_count
-                calculate_attr_from_metrics(:classes)
-            end
-            
-            def individuals_count
-                calculate_attr_from_metrics(:individuals)
-            end
-            
-            def propoerties_count
-                calculate_attr_from_metrics(:properties)
-            end
-            
-            def axioms_counts
-                calculate_attr_from_metrics(:numberOfAxioms)
-            end
-            
-            def object_properties_counts
-                calculate_attr_from_metrics(:numberOfObjectProperties)
-            end
-            
-            def data_properties_counts
-                calculate_attr_from_metrics(:numberOfDataProperties)
-            end
-            
-            def labels_counts
-                calculate_attr_from_metrics(:numberOfLabels)
-            end
-            
-            def deprecated_counts
-                calculate_attr_from_metrics(:numberOfDeprecated)
-            end
-            
-            def using_projects_counts
-                calculate_attr_from_metrics(:numberOfUsingProjects)
-            end
-            
-            def endorsements_counts
-                calculate_attr_from_metrics(:numberOfEnsorments)
-            end
-            
-            def mappings_counts
-                calculate_attr_from_metrics(:numberOfMappings)
-            end
-            
-            def users_counts
-                LinkedData::Models::User.all.count
-            end
-            
-            def agents_counts
-                LinkedData::Models::Agent.all.count
+            %w[projects analytics search sparql metrics artefacts records distributions].each do |name|
+                define_method("#{name}_url") do
+                    RDF::URI(LinkedData.settings.id_url_prefix).join(name)
+                end
             end
 
             def self.valid_hash_code(inst, attr)
@@ -263,7 +198,11 @@ def self.valid_hash_code(inst, attr)
             private
 
             def calculate_attr_from_metrics(attr)
-                LinkedData::Models::Metric.where.include(attr).all.sum do |metric|
+                @latest_metrics ||= LinkedData::Models::Metric.where.include(LinkedData::Models::Metric.goo_attrs_to_load([:all])).all
+                    .group_by { |x| x.id.split('/')[-4] }
+                    .transform_values { |metrics| metrics.max_by { |x| x.id.split('/')[-2].to_i } }
+
+                @latest_metrics.values.sum do |metric|
                     metric.loaded_attributes.include?(attr) ? metric.send(attr).to_i : 0
                 end
             end

From dd2578f4022364abee328591da084551ca8f14e0 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 21 Feb 2025 10:20:04 +0100
Subject: [PATCH 17/66] Feature: add metrics in artefacts distributions (#194)

* add metrics to artefacts and distributions

* code refactoring and metrics value to 0

* fix tests artefacts and distributions

* add concerns and refactor code

* fix

* fix endorsement metric attribute
---
 .../semantic_artefact/attribute_fetcher.rb    |  52 ++++
 .../semantic_artefact/attribute_mapping.rb    |  27 +++
 lib/ontologies_linked_data/models/metric.rb   |   4 +-
 .../models/mod/semantic_artefact.rb           | 222 ++++++++----------
 .../mod/semantic_artefact_distribution.rb     | 105 ++++-----
 test/models/mod/test_artefact.rb              |  18 +-
 test/models/mod/test_artefact_distribution.rb |  35 ++-
 7 files changed, 267 insertions(+), 196 deletions(-)
 create mode 100644 lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
 create mode 100644 lib/ontologies_linked_data/concerns/semantic_artefact/attribute_mapping.rb

diff --git a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
new file mode 100644
index 00000000..6ef9b7a6
--- /dev/null
+++ b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
@@ -0,0 +1,52 @@
+module LinkedData
+    module Concerns
+        module SemanticArtefact
+            module AttributeFetcher
+                def bring(*attributes)
+                    attributes = [attributes] unless attributes.is_a?(Array)
+                
+                    attributes.each do |attr|
+                        
+                        mapping = self.class.attribute_mappings[attr]
+                        next if mapping.nil?
+                
+                        model = mapping[:model]
+                        mapped_attr = mapping[:attribute]
+                
+                        case model
+                        when :ontology
+                            fetch_from_ontology(attr, mapped_attr)
+                        when :ontology_submission
+                            fetch_from_submission(attr, mapped_attr)
+                        when :metric
+                            fetch_from_metrics(attr, mapped_attr)
+                        end
+                    end
+                end
+            
+                private
+            
+                def fetch_from_ontology(attr, mapped_attr)
+                    @ontology.bring(*mapped_attr)
+                    self.send("#{attr}=", @ontology.send(mapped_attr)) if @ontology.respond_to?(mapped_attr)
+                end
+            
+                def fetch_from_submission(attr, mapped_attr)
+                    latest = defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
+                    return unless latest
+                    latest.bring(*mapped_attr)
+                    self.send("#{attr}=", latest.send(mapped_attr)) if latest.respond_to?(mapped_attr)
+                end
+            
+                def fetch_from_metrics(attr, mapped_attr)
+                    latest = defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
+                    return unless latest
+                    latest.bring(metrics: [mapped_attr])
+                    metrics = latest.metrics
+                    metric_value = metrics&.respond_to?(mapped_attr) ? metrics.send(mapped_attr) || 0 : 0
+                    self.send("#{attr}=", metric_value)
+                end
+            end
+        end
+    end
+end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_mapping.rb b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_mapping.rb
new file mode 100644
index 00000000..27f25e91
--- /dev/null
+++ b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_mapping.rb
@@ -0,0 +1,27 @@
+module LinkedData
+    module Concerns
+        module SemanticArtefact
+            module AttributeMapping
+                def self.included(base)
+                    base.extend ClassMethods
+                end
+            
+                module ClassMethods
+                    attr_accessor :attribute_mappings
+            
+                    def attribute_mapped(name, **options)
+                        mapped_to = options.delete(:mapped_to)
+                        attribute(name, **options)
+                        @attribute_mappings ||= {}
+                        mapped_to[:attribute] ||= name if mapped_to
+                        @attribute_mappings[name] = mapped_to if mapped_to
+                    end
+
+                    def type_uri
+                        namespace[model_name].to_s
+                    end
+                end
+            end
+        end
+    end
+end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/models/metric.rb b/lib/ontologies_linked_data/models/metric.rb
index 65688db7..e94b0d24 100644
--- a/lib/ontologies_linked_data/models/metric.rb
+++ b/lib/ontologies_linked_data/models/metric.rb
@@ -22,7 +22,7 @@ class Metric < LinkedData::Models::Base
 
       attribute :numberOfNotes, namespace: :mod, type: :integer
       attribute :numberOfUsingProjects, namespace: :mod, type: :integer
-      attribute :numberOfEnsorments, namespace: :mod, type: :integer
+      attribute :numberOfEndorsements, namespace: :mod, type: :integer
       attribute :numberOfEvaluations, namespace: :mod, type: :integer
       attribute :numberOfAgents, namespace: :mod, type: :integer
       attribute :numberOfObjectProperties, namespace: :mod, type: :integer
@@ -30,9 +30,11 @@ class Metric < LinkedData::Models::Base
       attribute :numberOfLabels, namespace: :mod, type: :integer
       attribute :numberOfDeprecated, namespace: :mod, type: :integer
       attribute :classesWithNoLabel, namespace: :mod, type: :integer
+      attribute :classesWithNoFormalDefinition, namespace: :mod, type: :integer      
       attribute :classesWithNoAuthorMetadata, namespace: :mod, type: :integer
       attribute :classesWithNoDateMetadata, namespace: :mod, type: :integer
       attribute :numberOfMappings, namespace: :mod, type: :integer
+      attribute :numberOfUsers, namespace: :mod, type: :integer
 
       cache_timeout 14400 # 4 hours
 
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index 17388c20..c0b97333 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -8,114 +8,112 @@ module LinkedData
     module Models
 
         class SemanticArtefact < LinkedData::Models::Base
-
-            class << self
-                attr_accessor :attribute_mappings
-                def attribute_mapped(name, **options)
-                  mapped_to = options.delete(:mapped_to)
-                  attribute(name, **options)
-                  @attribute_mappings ||= {}
-                  @attribute_mappings[name] = mapped_to if mapped_to
-                end
-            end
+            include LinkedData::Concerns::SemanticArtefact::AttributeMapping
+            include LinkedData::Concerns::SemanticArtefact::AttributeFetcher
 
             model :SemanticArtefact, namespace: :mod, name_with: ->(s) { artefact_id_generator(s) }
             
             # # SemanticArtefact attrs that map with ontology
-            attribute_mapped :acronym, namespace: :mod, mapped_to: { model: :ontology, attribute: :acronym }
+            attribute_mapped :acronym, namespace: :mod, mapped_to: { model: :ontology }
             attribute_mapped :title, namespace: :dcterms, mapped_to: { model: :ontology, attribute: :name }
             attribute_mapped :accessRights, namespace: :dcterms , mapped_to: { model: :ontology, attribute: :viewingRestriction }
             attribute_mapped :hasEvaluation, namespace: :mod, mapped_to: { model: :ontology, attribute: :reviews }
-            attribute_mapped :group, namespace: :mod, mapped_to: { model: :ontology, attribute: :group }
+            attribute_mapped :group, namespace: :mod, mapped_to: { model: :ontology }
             attribute_mapped :subject, namespace: :dcterms, mapped_to: { model: :ontology, attribute: :hasDomain }
             attribute_mapped :usedInProject, namespace: :mod, mapped_to: { model: :ontology, attribute: :projects }
-            attribute_mapped :isPartOf, namespace: :dcterms, mapped_to:{model: :ontology, attribute: :viewOf}
-            attribute_mapped :propertyPartition, namespace: :void, mapped_to:{model: :ontology, attribute: :properties}
-            attribute_mapped :hasVersion, namespace: :dcterms, mapped_to:{model: :ontology, attribute: :submissions}
+            attribute_mapped :isPartOf, namespace: :dcterms, mapped_to:{ model: :ontology, attribute: :viewOf}
+            attribute_mapped :propertyPartition, namespace: :void, mapped_to:{ model: :ontology, attribute: :properties}
+            attribute_mapped :hasVersion, namespace: :dcterms, mapped_to:{ model: :ontology, attribute: :submissions}
 
             # SemanticArtefact attrs that maps with submission
-            attribute_mapped :URI, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :URI}
-            attribute_mapped :versionIRI, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :versionIRI}
-            attribute_mapped :identifier, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :identifier}
+            attribute_mapped :URI, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :versionIRI, namespace: :owl, mapped_to: { model: :ontology_submission }
+            attribute_mapped :identifier, namespace: :dcterms, mapped_to: { model: :ontology_submission }
             attribute_mapped :creator, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :hasCreator }
-            attribute_mapped :versionInfo, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :version}
-            attribute_mapped :status, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :status}
-            attribute_mapped :deprecated, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :deprecated}
-            attribute_mapped :language, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :naturalLanguage}
-            attribute_mapped :type, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :isOfType}
-            attribute_mapped :license, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasLicense}
-            attribute_mapped :useGuidelines, namespace: :cc, mapped_to: {model: :ontology_submission, attribute: :useGuidelines}
-            attribute_mapped :morePermissions, namespace: :cc, mapped_to: {model: :ontology_submission, attribute: :morePermissions}
-            attribute_mapped :rightsHolder, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :copyrightHolder}
-            attribute_mapped :description, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :description}
-            attribute_mapped :homepage, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :homepage}
-            attribute_mapped :landingPage, namespace: :dcat, mapped_to: {model: :ontology_submission, attribute: :documentation}
-            attribute_mapped :comment, namespace: :rdfs, mapped_to: {model: :ontology_submission, attribute: :notes}
-            attribute_mapped :keyword, namespace: :dcat, mapped_to: {model: :ontology_submission, attribute: :keywords}
-            attribute_mapped :alternative, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :alternative}
-            attribute_mapped :hiddenLabel, namespace: :skos, mapped_to: {model: :ontology_submission, attribute: :hiddenLabel}
-            attribute_mapped :abstract, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :abstract}
-            attribute_mapped :bibliographicCitation, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :publication}
-            attribute_mapped :contactPoint, namespace: :dcat, mapped_to: {model: :ontology_submission, attribute: :contact}
-            attribute_mapped :contributor, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasContributor}
-            attribute_mapped :curatedBy, namespace: :pav, mapped_to: {model: :ontology_submission, attribute: :curatedBy}
-            attribute_mapped :translator, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :translator}
-            attribute_mapped :publisher, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :publisher}
-            attribute_mapped :fundedBy, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :fundedBy}
-            attribute_mapped :endorsedBy, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :endorsedBy}
-            attribute_mapped :comment, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :notes}
-            attribute_mapped :audience, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :audience}
-            attribute_mapped :repository, namespace: :doap, mapped_to: {model: :ontology_submission, attribute: :repository}
-            attribute_mapped :bugDatabase, namespace: :doap, mapped_to: {model: :ontology_submission, attribute: :bugDatabase}
-            attribute_mapped :mailingList, namespace: :doap, mapped_to: {model: :ontology_submission, attribute: :mailingList}
-            attribute_mapped :toDoList, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :toDoList}
-            attribute_mapped :award, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :award}
-            attribute_mapped :knownUsage, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :knownUsage}
-            attribute_mapped :designedForTask, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :designedForOntologyTask}
-            attribute_mapped :coverage, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :coverage}
-            attribute_mapped :example, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :example}
-            attribute_mapped :createdWith, namespace: :pav, mapped_to: {model: :ontology_submission, attribute: :usedOntologyEngineeringTool}
-            attribute_mapped :accrualMethod, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :accrualMethod}
-            attribute_mapped :accrualPeriodicity, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :accrualPeriodicity}
-            attribute_mapped :accrualPolicy, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :accrualPolicy}
-            attribute_mapped :competencyQuestion, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :competencyQuestion}
-            attribute_mapped :wasGeneratedBy, namespace: :prov, mapped_to: {model: :ontology_submission, attribute: :wasGeneratedBy}
-            attribute_mapped :wasInvalidatedBy, namespace: :prov, mapped_to: {model: :ontology_submission, attribute: :wasInvalidatedBy}
-            attribute_mapped :isFormatOf, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :isFormatOf}
-            attribute_mapped :hasFormat, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasFormat}
-            attribute_mapped :uriLookupEndpoint, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :uriLookupEndpoint}
-            attribute_mapped :openSearchDescription, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :openSearchDescription}
-            attribute_mapped :source, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :source}
-            attribute_mapped :includedInDataCatalog, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :includedInDataCatalog}
-            attribute_mapped :priorVersion, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :hasPriorVersion}
-            attribute_mapped :hasPart, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :hasPart}
-            attribute_mapped :relation, namespace: :dcterms, mapped_to: {model: :ontology_submission, attribute: :ontologyRelatedTo}
-            attribute_mapped :semanticArtefactRelation, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :ontologyRelatedTo}
-            attribute_mapped :specializes, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :explanationEvolution}
-            attribute_mapped :generalizes, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :generalizes}
-            attribute_mapped :usedBy, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :usedBy}
-            attribute_mapped :reliesOn, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :ontologyRelatedTo}
-            attribute_mapped :similar, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :similarTo}
-            attribute_mapped :comesFromTheSameDomain, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :comesFromTheSameDomain}
-            attribute_mapped :hasEquivalencesWith, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :isAlignedTo}
-            attribute_mapped :backwardCompatibleWith, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :isBackwardCompatibleWith}
-            attribute_mapped :incompatibleWith, namespace: :owl, mapped_to: {model: :ontology_submission, attribute: :isIncompatibleWith}
-            attribute_mapped :hasDisparateModellingWith, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :hasDisparateModelling}
-            attribute_mapped :hasDisjunctionsWith, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :hasDisjunctionsWith}
-            attribute_mapped :workTranslation, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :workTranslation}
-            attribute_mapped :translationOfWork, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :translationOfWork}
-            attribute_mapped :uriRegexPattern, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :uriRegexPattern}
-            attribute_mapped :preferredNamespaceUri, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :preferredNamespaceUri}
-            attribute_mapped :preferredNamespacePrefix, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :preferredNamespacePrefix}
-            attribute_mapped :exampleResource, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :exampleIdentifier}
-            attribute_mapped :primaryTopic, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :keyClasses}
-            attribute_mapped :rootResource, namespace: :void, mapped_to: {model: :ontology_submission, attribute: :roots}
-            attribute_mapped :changes, namespace: :vann, mapped_to: {model: :ontology_submission, attribute: :diffFilePath}
-            attribute_mapped :associatedMedia, namespace: :schema, mapped_to: {model: :ontology_submission, attribute: :associatedMedia}
-            attribute_mapped :depiction, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :depiction}
-            attribute_mapped :logo, namespace: :foaf, mapped_to: {model: :ontology_submission, attribute: :logo}
-            attribute_mapped :metrics, namespace: :mod, mapped_to: {model: :ontology_submission, attribute: :metrics}
-
+            attribute_mapped :versionInfo, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :version}
+            attribute_mapped :status, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :deprecated, namespace: :owl, mapped_to: { model: :ontology_submission }
+            attribute_mapped :language, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :naturalLanguage}
+            attribute_mapped :type, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :isOfType}
+            attribute_mapped :license, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :hasLicense}
+            attribute_mapped :useGuidelines, namespace: :cc, mapped_to: { model: :ontology_submission }
+            attribute_mapped :morePermissions, namespace: :cc, mapped_to: { model: :ontology_submission }
+            attribute_mapped :rightsHolder, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :copyrightHolder}
+            attribute_mapped :description, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :homepage, namespace: :foaf, mapped_to: { model: :ontology_submission }
+            attribute_mapped :landingPage, namespace: :dcat, mapped_to: { model: :ontology_submission, attribute: :documentation}
+            attribute_mapped :comment, namespace: :rdfs, mapped_to: { model: :ontology_submission, attribute: :notes}
+            attribute_mapped :keyword, namespace: :dcat, mapped_to: { model: :ontology_submission, attribute: :keywords}
+            attribute_mapped :alternative, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :hiddenLabel, namespace: :skos, mapped_to: { model: :ontology_submission }
+            attribute_mapped :abstract, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :bibliographicCitation, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :publication}
+            attribute_mapped :contactPoint, namespace: :dcat, mapped_to: { model: :ontology_submission, attribute: :contact}
+            attribute_mapped :contributor, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :hasContributor}
+            attribute_mapped :curatedBy, namespace: :pav, mapped_to: { model: :ontology_submission }
+            attribute_mapped :translator, namespace: :schema, mapped_to: { model: :ontology_submission }
+            attribute_mapped :publisher, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :fundedBy, namespace: :foaf, mapped_to: { model: :ontology_submission }
+            attribute_mapped :endorsedBy, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :comment, namespace: :schema, mapped_to: { model: :ontology_submission, attribute: :notes}
+            attribute_mapped :audience, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :repository, namespace: :doap, mapped_to: { model: :ontology_submission }
+            attribute_mapped :bugDatabase, namespace: :doap, mapped_to: { model: :ontology_submission }
+            attribute_mapped :mailingList, namespace: :doap, mapped_to: { model: :ontology_submission }
+            attribute_mapped :toDoList, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :award, namespace: :schema, mapped_to: { model: :ontology_submission }
+            attribute_mapped :knownUsage, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :designedForTask, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :designedForOntologyTask}
+            attribute_mapped :coverage, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :example, namespace: :vann, mapped_to: { model: :ontology_submission }
+            attribute_mapped :createdWith, namespace: :pav, mapped_to: { model: :ontology_submission, attribute: :usedOntologyEngineeringTool}
+            attribute_mapped :accrualMethod, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :accrualPeriodicity, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :accrualPolicy, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :competencyQuestion, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :wasGeneratedBy, namespace: :prov, mapped_to: { model: :ontology_submission }
+            attribute_mapped :wasInvalidatedBy, namespace: :prov, mapped_to: { model: :ontology_submission }
+            attribute_mapped :isFormatOf, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :hasFormat, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :uriLookupEndpoint, namespace: :void, mapped_to: { model: :ontology_submission }
+            attribute_mapped :openSearchDescription, namespace: :void, mapped_to: { model: :ontology_submission }
+            attribute_mapped :source, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :includedInDataCatalog, namespace: :schema, mapped_to: { model: :ontology_submission }
+            attribute_mapped :priorVersion, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :hasPriorVersion}
+            attribute_mapped :hasPart, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :relation, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :ontologyRelatedTo}
+            attribute_mapped :semanticArtefactRelation, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :ontologyRelatedTo}
+            attribute_mapped :specializes, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :explanationEvolution}
+            attribute_mapped :generalizes, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :usedBy, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :reliesOn, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :ontologyRelatedTo}
+            attribute_mapped :similar, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :similarTo}
+            attribute_mapped :comesFromTheSameDomain, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :hasEquivalencesWith, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :isAlignedTo}
+            attribute_mapped :backwardCompatibleWith, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :isBackwardCompatibleWith}
+            attribute_mapped :incompatibleWith, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :isIncompatibleWith}
+            attribute_mapped :hasDisparateModellingWith, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasDisparateModelling}
+            attribute_mapped :hasDisjunctionsWith, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :workTranslation, namespace: :schema, mapped_to: { model: :ontology_submission }
+            attribute_mapped :translationOfWork, namespace: :schema, mapped_to: { model: :ontology_submission }
+            attribute_mapped :uriRegexPattern, namespace: :void, mapped_to: { model: :ontology_submission }
+            attribute_mapped :preferredNamespaceUri, namespace: :vann, mapped_to: { model: :ontology_submission }
+            attribute_mapped :preferredNamespacePrefix, namespace: :vann, mapped_to: { model: :ontology_submission }
+            attribute_mapped :exampleResource, namespace: :void, mapped_to: { model: :ontology_submission, attribute: :exampleIdentifier}
+            attribute_mapped :primaryTopic, namespace: :foaf, mapped_to: { model: :ontology_submission, attribute: :keyClasses}
+            attribute_mapped :rootResource, namespace: :void, mapped_to: { model: :ontology_submission, attribute: :roots}
+            attribute_mapped :changes, namespace: :vann, mapped_to: { model: :ontology_submission, attribute: :diffFilePath}
+            attribute_mapped :associatedMedia, namespace: :schema, mapped_to: { model: :ontology_submission }
+            attribute_mapped :depiction, namespace: :foaf, mapped_to: { model: :ontology_submission }
+            attribute_mapped :logo, namespace: :foaf, mapped_to: { model: :ontology_submission }
+            attribute_mapped :metrics, namespace: :mod, mapped_to: { model: :ontology_submission }
+
+            attribute_mapped :numberOfNotes, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfUsingProjects, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfEndorsements, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfEvaluations, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfUsers, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfAgents, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
 
             attribute :ontology, type: :ontology, enforce: [:existence]
             
@@ -150,14 +148,6 @@ def self.artefact_id_generator(ss)
                 )
             end
 
-            def initialize
-                super
-            end
-
-            def self.type_uri
-                self.namespace[self.model_name].to_s
-            end
-
             def self.find(artefact_id)
                 ont = Ontology.find(artefact_id).include(:acronym, :viewingRestriction, :administeredBy, :acl).first
                 return nil unless ont
@@ -168,30 +158,6 @@ def self.find(artefact_id)
                 end
             end
 
-            # Method to fetch specific attributes and populate the SemanticArtefact instance
-            def bring(*attributes)
-                attributes = [attributes] unless attributes.is_a?(Array)
-                latest = @ontology.latest_submission(status: :ready)
-                attributes.each do |attr|
-                    mapping = self.class.attribute_mappings[attr]
-                    next if mapping.nil?
-
-                    model = mapping[:model]
-                    mapped_attr = mapping[:attribute]
-                    
-                    case model
-                    when :ontology
-                        @ontology.bring(*mapped_attr)
-                        self.send("#{attr}=", @ontology.send(mapped_attr)) if @ontology.respond_to?(mapped_attr)
-                    when :ontology_submission
-                        if latest
-                            latest.bring(*mapped_attr)
-                            self.send("#{attr}=", latest.send(mapped_attr))
-                        end
-                    end
-                end
-            end
-
             def self.all_artefacts(attributes, page, pagesize)
                 all_count = Ontology.where.count
                 onts = Ontology.where.include(:acronym, :viewingRestriction, :administeredBy, :acl).page(page, pagesize).page_count_set(all_count).all
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
index e613a82a..21ad3299 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
@@ -2,62 +2,65 @@ module LinkedData
     module Models
 
         class SemanticArtefactDistribution < LinkedData::Models::Base
-            
-            class << self
-                attr_accessor :attribute_mappings
-                def attribute_mapped(name, **options)
-                  mapped_to = options.delete(:mapped_to)
-                  attribute(name, **options)
-                  @attribute_mappings ||= {}
-                  @attribute_mappings[name] = mapped_to if mapped_to
-                end
-            end
+            include LinkedData::Concerns::SemanticArtefact::AttributeMapping
+            include LinkedData::Concerns::SemanticArtefact::AttributeFetcher
 
             model :SemanticArtefactDistribution, namespace: :mod, name_with: ->(s) { distribution_id_generator(s) }
             
             # SAD attrs that map with submission
             attribute_mapped :distributionId, mapped_to: { model: :ontology_submission, attribute: :submissionId }
             attribute_mapped :title, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :URI }
-            attribute_mapped :deprecated, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :deprecated }
+            attribute_mapped :deprecated, namespace: :owl, mapped_to: { model: :ontology_submission }
             attribute_mapped :hasRepresentationLanguage, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasOntologyLanguage }
-            attribute_mapped :hasFormalityLevel, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasFormalityLevel }
+            attribute_mapped :hasFormalityLevel, namespace: :mod, mapped_to: { model: :ontology_submission }
             attribute_mapped :hasSyntax, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasOntologySyntax }
-            attribute_mapped :useGuidelines, namespace: :cc, mapped_to: { model: :ontology_submission, attribute: :useGuidelines }
-            attribute_mapped :description, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :description }
+            attribute_mapped :useGuidelines, namespace: :cc, mapped_to: { model: :ontology_submission }
+            attribute_mapped :description, namespace: :dcterms, mapped_to: { model: :ontology_submission }
             attribute_mapped :created, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :released }
             attribute_mapped :modified, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :modificationDate }
-            attribute_mapped :valid, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :valid }
-            attribute_mapped :curatedOn, namespace: :pav, mapped_to: { model: :ontology_submission, attribute: :curatedOn }
+            attribute_mapped :valid, namespace: :dcterms, mapped_to: { model: :ontology_submission }
+            attribute_mapped :curatedOn, namespace: :pav, mapped_to: { model: :ontology_submission }
             attribute_mapped :dateSubmitted, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :creationDate }
-            attribute_mapped :conformsToKnowledgeRepresentationParadigm, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :conformsToKnowledgeRepresentationParadigm }
+            attribute_mapped :conformsToKnowledgeRepresentationParadigm, namespace: :mod, mapped_to: { model: :ontology_submission }
             attribute_mapped :usedEngineeringMethodology, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :usedOntologyEngineeringMethodology }
-            attribute_mapped :prefLabelProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :prefLabelProperty }
-            attribute_mapped :synonymProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :synonymProperty }
-            attribute_mapped :definitionProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :definitionProperty }
-            attribute_mapped :authorProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :authorProperty }
-            attribute_mapped :obsoleteProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :obsoleteProperty }
-            attribute_mapped :createdProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :createdProperty }
-            attribute_mapped :modifiedProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :modifiedProperty }
-            attribute_mapped :hierarchyProperty, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hierarchyProperty }
+            attribute_mapped :prefLabelProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :synonymProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :definitionProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :authorProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :obsoleteProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :createdProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :modifiedProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :hierarchyProperty, namespace: :mod, mapped_to: { model: :ontology_submission }
             attribute_mapped :accessURL, namespace: :dcat, mapped_to: { model: :ontology_submission, attribute: :pullLocation }
             attribute_mapped :downloadURL, namespace: :dcat, mapped_to: { model: :ontology_submission, attribute: :dataDump }
-            attribute_mapped :endpoint, namespace: :sd, mapped_to: { model: :ontology_submission, attribute: :endpoint }
+            attribute_mapped :endpoint, namespace: :sd, mapped_to: { model: :ontology_submission }
             attribute_mapped :imports, namespace: :owl, mapped_to: { model: :ontology_submission, attribute: :useImports }
-            attribute_mapped :obsoleteParent, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :obsoleteParent }
-            attribute_mapped :metadataVoc, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :metadataVoc }
-            attribute_mapped :metrics, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :metrics }
-            attribute_mapped :numberOfClasses, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :class_count }
+            attribute_mapped :obsoleteParent, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :metadataVoc, namespace: :mod, mapped_to: { model: :ontology_submission }
+            attribute_mapped :metrics, namespace: :mod, mapped_to: { model: :ontology_submission }
 
             # SAD attrs that map with metrics
-            attribute_mapped :numberOfAxioms, namespace: :mod, mapped_to: { model: :metric, attribute: :numberOfAxioms }
-            attribute_mapped :maxDepth, namespace: :mod, mapped_to: { model: :metric, attribute: :maxDepth }
-            attribute_mapped :maxChildCount, namespace: :mod, mapped_to: { model: :metric, attribute: :maxChildCount }
-            attribute_mapped :averageChildCount, namespace: :mod, mapped_to: { model: :metric, attribute: :averageChildCount }
-            attribute_mapped :classesWithOneChild, namespace: :mod, mapped_to: { model: :metric, attribute: :classesWithOneChild }
-            attribute_mapped :classesWithMoreThan25Children, namespace: :mod, mapped_to: { model: :metric, attribute: :classesWithMoreThan25Children }
-            attribute_mapped :classesWithNoDefinition, namespace: :mod, mapped_to: { model: :metric, attribute: :classesWithNoDefinition }
-
-
+            attribute_mapped :numberOfClasses, namespace: :mod, mapped_to: { model: :metric, attribute: :classes }
+            attribute_mapped :numberOfAxioms, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :maxDepth, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :maxChildCount, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :averageChildCount, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :classesWithOneChild, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :classesWithMoreThan25Children, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :classesWithNoDefinition, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :numberOfIndividuals, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric, attribute: :individuals}
+            attribute_mapped :numberOfProperties, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric, attribute: :properties}
+            attribute_mapped :numberOfAgents, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfObjectProperties, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric}
+            attribute_mapped :numberOfDataProperties, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric}
+            attribute_mapped :numberOfLabels, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfDeprecated, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :classesWithNoFormalDefinition, namespace: :mod, mapped_to: { model: :metric }
+            attribute_mapped :classesWithNoLabel, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :classesWithNoAuthorMetadata, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :classesWithNoDateMetadata, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :numberOfMappings, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            
             # Attr special to SemanticArtefactDistribution
             attribute :submission, type: :ontology_submission
 
@@ -87,30 +90,6 @@ def initialize(sub)
                 @distributionId = sub.submissionId
             end
 
-            def self.type_uri
-                self.namespace[self.model_name].to_s
-            end
-
-            # Method to fetch specific attributes and populate the SemanticArtefact instance
-            def bring(*attributes)
-                attributes = [attributes] unless attributes.is_a?(Array)
-                attributes.each do |attr|
-                    mapping = self.class.attribute_mappings[attr]
-                    next if mapping.nil?
-
-                    model = mapping[:model]
-                    mapped_attr = mapping[:attribute]
-                    
-                    case model
-                    when :ontology_submission
-                        @submission.bring(*mapped_attr)
-                        self.send("#{attr}=", @submission.send(mapped_attr)) if @submission.respond_to?(mapped_attr)
-                    when :metrics
-                        next
-                        # TO-DO
-                    end
-                end
-            end
 
         end
 
diff --git a/test/models/mod/test_artefact.rb b/test/models/mod/test_artefact.rb
index e9336531..cf764c0d 100644
--- a/test/models/mod/test_artefact.rb
+++ b/test/models/mod/test_artefact.rb
@@ -16,7 +16,6 @@ def test_find_artefact
         assert_equal "STY", sa.ontology.acronym
     end
 
-
     def test_goo_attrs_to_load
         attrs = LinkedData::Models::SemanticArtefact.goo_attrs_to_load([])
         assert_equal [:acronym, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
@@ -42,10 +41,15 @@ def test_bring_attrs
                 value_ontology_attr = ont.send(mapped_attr)
                 if value_ontology_attr.is_a?(Array)
                     value_artefact_attr.each_with_index do |v, i|
-                        assert_equal v.id, value_ontology_attr[i].id
+                        expected_value = value_ontology_attr[i]
+                        if expected_value.respond_to?(:id) && v.respond_to?(:id)
+                            assert_equal expected_value.id, v.id
+                        else
+                            assert_equal expected_value, v
+                        end
                     end
                 else
-                    assert_equal value_artefact_attr, value_ontology_attr
+                    assert_equal value_ontology_attr, value_artefact_attr 
                 end
             when :ontology_submission
                 value_submission_attr = latest_sub.send(mapped_attr)
@@ -57,6 +61,14 @@ def test_bring_attrs
                 else
                     assert_equal value_artefact_attr, value_submission_attr
                 end
+            when :metric
+                metrics_obj = latest_sub.metrics
+                value_submission_metric_attr = if metrics_obj && metrics_obj.respond_to?(mapped_attr)
+                                                    metrics_obj.send(mapped_attr) || 0
+                                                else
+                                                    0
+                                                end
+                assert_equal value_artefact_attr, value_submission_metric_attr
             end
         end
 
diff --git a/test/models/mod/test_artefact_distribution.rb b/test/models/mod/test_artefact_distribution.rb
index 2219967a..e99b26d3 100644
--- a/test/models/mod/test_artefact_distribution.rb
+++ b/test/models/mod/test_artefact_distribution.rb
@@ -23,8 +23,41 @@ def test_bring_attrs
         create_test_ontology
         sa = LinkedData::Models::SemanticArtefact.find('STY')
         sa.ontology.bring(*:submissions)
-        sad = LinkedData::Models::SemanticArtefactDistribution.new(sa.ontology.submissions[0])
+        latest_sub = sa.ontology.submissions[0]
+        sad = LinkedData::Models::SemanticArtefactDistribution.new(latest_sub)
         sad.bring(*LinkedData::Models::SemanticArtefactDistribution.goo_attrs_to_load([:all]))
+        latest_sub.bring(*LinkedData::Models::OntologySubmission.goo_attrs_to_load([:all]))
+
+        LinkedData::Models::SemanticArtefactDistribution.attribute_mappings.each do |distribution_key, mapping|
+            value_distribution_attr = sad.send(distribution_key)
+            mapped_attr = mapping[:attribute]
+
+            case mapping[:model]
+            when :ontology_submission
+                value_submission_attr = latest_sub.send(mapped_attr)
+
+                if value_submission_attr.is_a?(Array)
+                    value_distribution_attr.each_with_index do |v, i|
+                        expected_value = value_submission_attr[i]
+                        if expected_value.respond_to?(:id) && v.respond_to?(:id)
+                            assert_equal expected_value.id, v.id
+                        else
+                            assert_equal expected_value, v
+                        end
+                    end
+                else
+                    assert_equal value_submission_attr, value_distribution_attr
+                end
+            when :metric
+                metrics_obj = latest_sub.metrics
+                value_submission_metric_attr = if metrics_obj && metrics_obj.respond_to?(mapped_attr)
+                                                    metrics_obj.send(mapped_attr) || 0
+                                                else
+                                                    0
+                                                end
+                assert_equal value_distribution_attr, value_submission_metric_attr
+            end
+        end
     end
 
     private

From b321d73a28b4f60fc5969da7a071b3c19c1a84f3 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Mon, 24 Feb 2025 10:04:35 +0100
Subject: [PATCH 18/66] Fix: remove all in goo attr to load (#197)

* remove :all in goo_attrs_to_load

* fix catalog tests

* fix

* Fix attributes displayed by default

* fix tests
---
 lib/ontologies_linked_data/models/base.rb                | 2 +-
 .../models/mod/semantic_artefact.rb                      | 2 +-
 .../models/mod/semantic_artefact_catalog.rb              | 4 +++-
 test/models/mod/test_artefact.rb                         | 2 +-
 test/models/mod/test_artefact_catalog.rb                 | 9 ++++-----
 5 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/lib/ontologies_linked_data/models/base.rb b/lib/ontologies_linked_data/models/base.rb
index 8f3652b0..9c2b330d 100644
--- a/lib/ontologies_linked_data/models/base.rb
+++ b/lib/ontologies_linked_data/models/base.rb
@@ -44,7 +44,7 @@ def self.goo_attrs_to_load(attributes = [], level = 0)
         # Get attributes, either provided, all, or default
         default_attrs = if !attributes.empty?
                           if attributes.first == :all
-                            (self.attributes(:all) + hypermedia_settings[:serialize_default]).uniq
+                            (self.attributes + hypermedia_settings[:serialize_default]).uniq
                           else
                             attributes - hypermedia_settings[:serialize_never]
                           end
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index c0b97333..c7c4c415 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -133,7 +133,7 @@ class SemanticArtefact < LinkedData::Models::Base
             # Access control
             read_restriction_based_on ->(artefct) { artefct.ontology }
 
-            serialize_default :acronym, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
+            serialize_default :acronym, :title, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
                               :license, :rightsHolder, :description, :landingPage, :keyword, :bibliographicCitation, :contactPoint,
                               :contributor, :publisher, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, 
                               :competencyQuestion, :wasGeneratedBy, :hasFormat, :includedInDataCatalog, :semanticArtefactRelation
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index 02004105..46787f32 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -126,7 +126,9 @@ class SemanticArtefactCatalog < LinkedData::Models::Base
                 define_method(handler) { calculate_attr_from_metrics(mapped_to) }
             end
               
-            serialize_default :acronym, :title, :color, :description, :logo, :fundedBy, :versionInfo, :homepage, :numberOfArtefacts, :federated_portals
+            serialize_default :acronym, :title, :identifier, :status, :language, :type, :accessRights, :license, :rightsHolder, :description,
+                              :landingPage, :keyword, :bibliographicCitation, :created, :modified , :contactPoint, :creator, :contributor, 
+                              :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL
 
             def ontologies_count
                 LinkedData::Models::Ontology.where(viewingRestriction: 'public').count
diff --git a/test/models/mod/test_artefact.rb b/test/models/mod/test_artefact.rb
index cf764c0d..ecabe518 100644
--- a/test/models/mod/test_artefact.rb
+++ b/test/models/mod/test_artefact.rb
@@ -18,7 +18,7 @@ def test_find_artefact
 
     def test_goo_attrs_to_load
         attrs = LinkedData::Models::SemanticArtefact.goo_attrs_to_load([])
-        assert_equal [:acronym, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
+        assert_equal [:acronym, :title, :accessRights, :subject, :URI, :versionIRI, :creator, :identifier, :status, :language, 
         :license, :rightsHolder, :description, :landingPage, :keyword, :bibliographicCitation, :contactPoint,
         :contributor, :publisher, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, 
         :competencyQuestion, :wasGeneratedBy, :hasFormat, :includedInDataCatalog, :semanticArtefactRelation], attrs
diff --git a/test/models/mod/test_artefact_catalog.rb b/test/models/mod/test_artefact_catalog.rb
index c091b582..a6c46c05 100644
--- a/test/models/mod/test_artefact_catalog.rb
+++ b/test/models/mod/test_artefact_catalog.rb
@@ -10,11 +10,10 @@ def test_create_artefact_catalog
   end
 
   def test_goo_attrs_to_load
-      all_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:all])
-      assert_equal LinkedData::Models::SemanticArtefactCatalog.attributes(:all), all_attrs
-
       default_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([])
-      assert_equal [:acronym, :title, :color, :description, :logo, :fundedBy, :versionInfo, :homepage, :numberOfArtefacts, :federated_portals], default_attrs
+      assert_equal [:acronym, :title, :identifier, :status, :language, :type, :accessRights, :license, :rightsHolder, 
+        :description, :landingPage, :keyword, :bibliographicCitation, :created, :modified, :contactPoint, :creator, 
+        :contributor, :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL], default_attrs
 
       specified_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:acronym, :title, :keyword, :featureList])
       assert_equal [:acronym, :title, :keyword, :featureList], specified_attrs
@@ -32,6 +31,6 @@ def test_bring_attrs
     sac.save
     all_attrs_to_bring = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:all])
     sac.bring(*all_attrs_to_bring)
-    assert_equal all_attrs_to_bring, sac.loaded_attributes.to_a
+    assert_equal all_attrs_to_bring.sort, (sac.loaded_attributes.to_a + [:type]).sort
   end
 end
\ No newline at end of file

From df89cf52a2e338fade728b04542b251bac921164 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 5 Mar 2025 10:54:50 +0100
Subject: [PATCH 19/66] update project model and imlement external api
 connectors

---
 .../concerns/connectors/anr_connector.rb      | 115 ++++++++++++++++++
 .../concerns/connectors/base_connector.rb     |  84 +++++++++++++
 .../concerns/connectors/cordis_connector.rb   |  82 +++++++++++++
 lib/ontologies_linked_data/models/project.rb  |  42 ++++++-
 4 files changed, 318 insertions(+), 5 deletions(-)
 create mode 100644 lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
 create mode 100644 lib/ontologies_linked_data/concerns/connectors/base_connector.rb
 create mode 100644 lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
new file mode 100644
index 00000000..31e464de
--- /dev/null
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -0,0 +1,115 @@
+require_relative 'base_connector'
+
+module Connectors
+  class AnrConnector < BaseConnector
+    DATASET_MAPPINGS = {
+      'ods_france2030-projets' => {
+        acronym: 'acronyme',
+        name: 'action_nom',
+        description: 'resume',
+        homepage: 'lien',
+        grant_number: 'eotp_projet',
+        start_date: 'date_debut_projet',
+        end_date: 'date_fin',
+        region: 'region_du_projet',
+        year: 'annee_de_contractualisation'
+      },
+      'aapg-projets' => {
+        acronym: 'acronyme_projet',
+        name: 'intitule_complet_du_comite',
+        description: nil,
+        homepage: 'lien',
+        grant_number: 'code_projet_anr',
+        start_date: nil,
+        end_date: nil,
+        region: 'libelle_de_region_tutelle_hebergeante',
+        year: 'edition'
+      }
+    }.freeze
+
+    ANR_FUNDER = {
+      type: 'Agent',
+      name: "Agence Nationale de la Recherche",
+      homepage: "https://anr.fr"
+    }.freeze
+
+    private
+    def build_url
+      dataset_id = params[:dataset_id]
+      raise ConnectorError, "Dataset ID is required" unless dataset_id
+      "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/#{dataset_id}/records"
+    end
+
+    def build_params(params)
+      raise ConnectorError, "Query parameter is required" unless params[:query]
+      {
+        limit: params[:limit] || 20,
+        where: build_query_conditions(params)
+      }
+    end
+
+    def build_query_conditions(params)
+      mapping = get_dataset_mapping      
+      if params[:query]
+        query_term = params[:query]
+        acronym_field = mapping[:acronym]
+        grant_field = mapping[:grant_number]
+        "(#{acronym_field} LIKE '*#{query_term}*' OR #{grant_field} LIKE '*#{query_term}*')"
+      else
+        raise ConnectorError, "Query parameter is required"
+      end
+    end
+    
+    def map_response(data)
+      raise ConnectorError, "No projects found matching search criteria" if data['results'].empty?      
+      mapping = get_dataset_mapping
+      data['results'].map { |result| build_project_data(result, mapping) }     
+    end
+
+    def get_dataset_mapping
+      mapping = DATASET_MAPPINGS[params[:dataset_id]]
+      raise ConnectorError, "Unsupported dataset: #{params[:dataset_id]}" unless mapping
+      mapping
+    end
+
+    def find_matching_project(results, mapping)
+      if params[:id]
+        results.find { |r| r[mapping[:grant_number]] == params[:id] }
+      elsif params[:acronym]
+        results.find { |r| r[mapping[:acronym]] == params[:acronym] }
+      end
+    end
+
+    def build_project_data(result, mapping)
+      {
+        source: 'ANR',
+        type: 'FundedProject',
+        acronym: result[mapping[:acronym]],
+        name: result[mapping[:name]],
+        description: get_description(result, mapping),
+        homepage: result[mapping[:homepage]],
+        ontologyUsed: [],
+        creator: nil,
+        created: DateTime.now,
+        updated: DateTime.now,
+        keywords: [],
+        contact: nil,
+        institution: nil,
+        coordinator: nil,
+        logo: nil,
+        grant_number: result[mapping[:grant_number]],
+        start_date: result[mapping[:start_date]],
+        end_date: result[mapping[:end_date]],
+        funder: ANR_FUNDER
+      }
+    end
+
+    def get_description(result, mapping)
+      if params[:dataset_id] == 'ods_france2030-projets'
+        result[mapping[:description]] || result['action_nom_long']
+      else
+        nil
+      end
+    end
+  end
+end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
new file mode 100644
index 00000000..39b2c159
--- /dev/null
+++ b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
@@ -0,0 +1,84 @@
+require 'net/http'
+require 'json'
+
+module Connectors
+  class ConnectorError < StandardError; end
+
+  class BaseConnector
+    attr_reader :params
+
+    def initialize
+      @params = {}
+    end
+
+    def fetch_projects(params)
+      @params = params
+      url = build_url
+      query_params = build_params(params)      
+      uri = URI(url)
+      uri.query = URI.encode_www_form(query_params)
+      response = fetch_data(uri)
+      map_response(response)
+    end
+
+    private
+    def fetch_data(uri)
+      begin        
+        http = Net::HTTP.new(uri.host, uri.port)
+        http.use_ssl = (uri.scheme == 'https')
+        request = Net::HTTP::Get.new(uri)
+        response = http.request(request)
+        handle_response(response)
+      rescue StandardError => e
+        raise ConnectorError, "External API error: #{e.message}"
+      end
+    end
+    
+    def handle_response(response)      
+      case response
+      when Net::HTTPSuccess
+        content_type = response.content_type || ''
+        if content_type.include?('xml')
+          response.body 
+        elsif content_type.include?('json')
+          JSON.parse(response.body)
+        else
+          # try JSON first fallback to raw body
+          begin
+            JSON.parse(response.body)
+          rescue JSON::ParserError
+            response.body
+          end
+        end
+      else
+        raise ConnectorError, "External API returned error: #{response.code}"
+      end
+    end
+
+    # To be implemented by child classes
+    def build_url
+      raise NotImplementedError
+    end
+
+    def build_params(params)
+      raise NotImplementedError
+    end
+
+    def map_response(data)
+      raise NotImplementedError
+    end
+  end
+  
+  class Factory
+    def self.create(source)
+      case source&.upcase
+      when 'ANR'
+        AnrConnector.new
+      when 'CORDIS'
+        CordisConnector.new
+      else
+        raise ConnectorError, "Unsupported source: #{source}"
+      end
+    end
+  end
+end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
new file mode 100644
index 00000000..e6fe0dec
--- /dev/null
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -0,0 +1,82 @@
+require 'rexml/document'
+
+module Connectors
+  class CordisConnector < BaseConnector
+    private
+
+    def build_url
+      project_id = params[:id]
+      raise ConnectorError, "Project ID is required" unless project_id
+      "https://cordis.europa.eu/project/id/#{project_id}"
+    end
+
+    def build_params(params)
+      {format: 'xml'}
+    end
+
+    def map_response(xml_data)
+      begin
+        doc = REXML::Document.new(xml_data)
+        project = doc.elements['project']
+        
+        raise ConnectorError, "Invalid XML response" unless project
+    
+        coordinator = extract_coordinator(project)
+        project_url = extract_project_url(project)
+        keywords = extract_keywords(project)
+        {
+          source: 'CORDIS',
+          type: 'FundedProject',
+          source: 'CORDIS',
+          acronym: project.elements['acronym']&.text,
+          name: project.elements['title']&.text,
+          description: project.elements['objective']&.text,
+          homepage: project_url,
+          ontologyUsed: [],  
+          creator: nil,      
+          created: DateTime.now,  
+          updated: DateTime.now, 
+          keywords: keywords,
+          contact: nil,     
+          institution: nil,  
+          coordinator: coordinator,
+          logo: nil,       
+          grant_number: project.elements['id']&.text,
+          start_date: project.elements['startDate']&.text,
+          end_date: project.elements['endDate']&.text,
+          funder: {
+            type: 'Agent',
+            name: "European Commission",
+            homepage: "https://ec.europa.eu"
+          }
+        }
+      rescue REXML::ParseException => e
+        raise ConnectorError, "Failed to parse XML: #{e.message}"
+      end
+    end
+
+    private
+
+    def extract_keywords(project)
+      keywords_text = project.elements['keywords']&.text
+      return [] unless keywords_text
+      keywords_text.split(',').map(&:strip)
+    end
+
+    private
+
+    def extract_coordinator(project)
+      coord = REXML::XPath.first(project, ".//organization[@type='coordinator']")
+      return nil unless coord
+      {
+        name: coord.elements['legalName']&.text,
+        homepage: coord.elements['address/url']&.text
+      }
+    end
+
+    def extract_project_url(project)
+      web_link = REXML::XPath.first(project, ".//webLink[@represents='project']/physUrl")
+      web_link&.text || "https://cordis.europa.eu/project/id/#{project.elements['id']&.text}"
+    end
+  end
+end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index 5026dce2..ff587b17 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -1,18 +1,50 @@
+\
 module LinkedData
   module Models
     class Project < LinkedData::Models::Base
       model :project, :name_with => :acronym
+
+      PROJECT_TYPES = ["FundedProject", "NonFundedProject"]
+      PROJECT_SOURCES = ["ANR", "CORDIS"]
+
+      # Required attributes
       attribute :acronym, enforce: [:unique, :existence]
       attribute :creator, enforce: [:existence, :user, :list]
       attribute :created, enforce: [:date_time], :default => lambda {|x| DateTime.now }
       attribute :updated, enforce: [:date_time], :default => lambda {|x| DateTime.now }
+      attribute :type, enforce: [:existence], enforcedValues: PROJECT_TYPES
       attribute :name, enforce: [:existence]
       attribute :homePage, enforce: [:uri, :existence]
       attribute :description, enforce: [:existence]
-      attribute :contacts
-      attribute :institution
-      attribute :ontologyUsed, enforce: [:ontology, :list]
+      attribute :ontologyUsed, enforce: [:ontology, :list, :existence]
+      attribute :source, enforce: [:existence], enforcedValues: PROJECT_SOURCES
+      
+      # Optional attributes
+      attribute :keywords, enforce: [:list]
+      attribute :contact, enforce: [:Agent]
+      attribute :institution, enforce: [:Agent]
+      attribute :coordinator, enforce: [:Agent]
+      attribute :logo, enforce: [:uri]
+      
+      # Conditional attributes (required for ANR/CORDIS)
+      attribute :grant_number, enforce: [:string]
+      attribute :start_date, enforce: [:date_time]
+      attribute :end_date, enforce: [:date_time]
+      attribute :funder, enforce: [:Agent]
+      
+
+      embed :contact, :institution, :funder, :coordinator
+      serialize_default :acronym, :type, :name, :homepage, :description, 
+                      :ontologyUsed, :created, :updated, :keywords,
+                      :contact, :institution, :grant_number, :start_date, 
+                      :end_date, :funder, :coordinator, :logo
+
+      write_access :creator
+      access_control_load :creator
+
+      def self.valid_project_type?(type)
+        PROJECT_TYPES.include?(type)
+      end
     end
   end
-end
-
+end
\ No newline at end of file

From a9e695ad3906e5de504d42a410beee6ea81f7aae Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Wed, 5 Mar 2025 15:52:58 +0100
Subject: [PATCH 20/66] Fix: optimization for artefacts model (#198)

* refactor artefact and attribute_fetcher for optimization

* fix tests
---
 .../semantic_artefact/attribute_fetcher.rb    | 62 ++++++++++---------
 .../models/mod/semantic_artefact.rb           |  3 +-
 2 files changed, 33 insertions(+), 32 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
index 6ef9b7a6..0a6d18c4 100644
--- a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
+++ b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
@@ -3,48 +3,50 @@ module Concerns
         module SemanticArtefact
             module AttributeFetcher
                 def bring(*attributes)
-                    attributes = [attributes] unless attributes.is_a?(Array)
-                
-                    attributes.each do |attr|
-                        
+                    attributes.flatten!
+
+                    grouped_attributes = attributes.each_with_object(Hash.new { |h, k| h[k] = {} }) do |attr, hash|
                         mapping = self.class.attribute_mappings[attr]
-                        next if mapping.nil?
-                
+                        next unless mapping
                         model = mapping[:model]
                         mapped_attr = mapping[:attribute]
-                
-                        case model
-                        when :ontology
-                            fetch_from_ontology(attr, mapped_attr)
-                        when :ontology_submission
-                            fetch_from_submission(attr, mapped_attr)
-                        when :metric
-                            fetch_from_metrics(attr, mapped_attr)
-                        end
+                        hash[model][attr] = mapped_attr
                     end
+
+                    fetch_from_ontology(grouped_attributes[:ontology]) if grouped_attributes[:ontology].any?
+                    fetch_from_submission(grouped_attributes[:ontology_submission]) if grouped_attributes[:ontology_submission].any?
+                    fetch_from_metrics(grouped_attributes[:metric]) if grouped_attributes[:metric].any?
                 end
             
                 private
             
-                def fetch_from_ontology(attr, mapped_attr)
-                    @ontology.bring(*mapped_attr)
-                    self.send("#{attr}=", @ontology.send(mapped_attr)) if @ontology.respond_to?(mapped_attr)
+                def fetch_from_ontology(attributes)
+                    return if attributes.empty?
+                    @ontology.bring(*attributes.values)
+                    attributes.each do |attr, mapped_attr|
+                        self.send("#{attr}=", @ontology.send(mapped_attr)) if @ontology.respond_to?(mapped_attr)
+                    end
                 end
             
-                def fetch_from_submission(attr, mapped_attr)
-                    latest = defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
-                    return unless latest
-                    latest.bring(*mapped_attr)
-                    self.send("#{attr}=", latest.send(mapped_attr)) if latest.respond_to?(mapped_attr)
+                def fetch_from_submission(attributes)
+                    return if attributes.empty?
+                    @latest ||= defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
+                    return unless @latest
+                    @latest.bring(*attributes.values)
+                    attributes.each do |attr, mapped_attr|
+                        self.send("#{attr}=", @latest.send(mapped_attr)) if @latest.respond_to?(mapped_attr)
+                    end
                 end
             
-                def fetch_from_metrics(attr, mapped_attr)
-                    latest = defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
-                    return unless latest
-                    latest.bring(metrics: [mapped_attr])
-                    metrics = latest.metrics
-                    metric_value = metrics&.respond_to?(mapped_attr) ? metrics.send(mapped_attr) || 0 : 0
-                    self.send("#{attr}=", metric_value)
+                def fetch_from_metrics(attributes)
+                    return if attributes.empty?
+                    @latest ||= defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
+                    return unless @latest
+                    @latest.bring(metrics: [attributes.values])
+                    attributes.each do |attr, mapped_attr|
+                        metric_value = @latest.metrics&.respond_to?(mapped_attr) ? @latest.metrics.send(mapped_attr) || 0 : 0
+                        self.send("#{attr}=", metric_value)
+                    end
                 end
             end
         end
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index c7c4c415..d0df179d 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -160,11 +160,10 @@ def self.find(artefact_id)
 
             def self.all_artefacts(attributes, page, pagesize)
                 all_count = Ontology.where.count
-                onts = Ontology.where.include(:acronym, :viewingRestriction, :administeredBy, :acl).page(page, pagesize).page_count_set(all_count).all
+                onts = Ontology.where.include(:viewingRestriction, :administeredBy, :acl).page(page, pagesize).page_count_set(all_count).all
                 all_artefacts = onts.map do |o|
                     new.tap do |sa|
                         sa.ontology = o
-                        sa.acronym = o.acronym
                         sa.bring(*attributes) if attributes
                     end
                 end

From 87dfa9ac578294e611001efc91b48b0058f503dc Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Mon, 10 Mar 2025 08:46:08 +0100
Subject: [PATCH 21/66] make some data configurable and return project model in
 response

---
 .../concerns/connectors/anr_connector.rb      | 155 ++++++++++--------
 .../concerns/connectors/base_connector.rb     |  43 +++--
 .../concerns/connectors/cordis_connector.rb   | 121 ++++++++------
 lib/ontologies_linked_data/config/config.rb   |  74 +++++++++
 lib/ontologies_linked_data/models/project.rb  |  16 +-
 5 files changed, 262 insertions(+), 147 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index 31e464de..e32d699f 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -2,72 +2,51 @@
 
 module Connectors
   class AnrConnector < BaseConnector
-    DATASET_MAPPINGS = {
-      'ods_france2030-projets' => {
-        acronym: 'acronyme',
-        name: 'action_nom',
-        description: 'resume',
-        homepage: 'lien',
-        grant_number: 'eotp_projet',
-        start_date: 'date_debut_projet',
-        end_date: 'date_fin',
-        region: 'region_du_projet',
-        year: 'annee_de_contractualisation'
-      },
-      'aapg-projets' => {
-        acronym: 'acronyme_projet',
-        name: 'intitule_complet_du_comite',
-        description: nil,
-        homepage: 'lien',
-        grant_number: 'code_projet_anr',
-        start_date: nil,
-        end_date: nil,
-        region: 'libelle_de_region_tutelle_hebergeante',
-        year: 'edition'
-      }
-    }.freeze
-
-    ANR_FUNDER = {
-      type: 'Agent',
-      name: "Agence Nationale de la Recherche",
-      homepage: "https://anr.fr"
-    }.freeze
-
     private
+    
     def build_url
       dataset_id = params[:dataset_id]
       raise ConnectorError, "Dataset ID is required" unless dataset_id
-      "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/#{dataset_id}/records"
+      base_url = LinkedData.settings.anr_connector[:base_url]
+      "#{base_url}/#{dataset_id}/records"
     end
 
     def build_params(params)
       raise ConnectorError, "Query parameter is required" unless params[:query]
+
+      # validate query length
+      query = params[:query].to_s.strip
+      min_query_length = LinkedData.settings.anr_connector[:min_query_length]
+      raise ConnectorError, "Query must be at least #{min_query_length} characters long" if query.length < min_query_length
+      
       {
-        limit: params[:limit] || 20,
+        limit: params[:limit] || LinkedData.settings.anr_connector[:default_limit],
         where: build_query_conditions(params)
       }
     end
 
     def build_query_conditions(params)
-      mapping = get_dataset_mapping      
+      mapping = get_dataset_mapping
+      config = LinkedData.settings.anr_connector
+      query_format = config[:query_format] || "LIKE '*%s*'"
       if params[:query]
         query_term = params[:query]
-        acronym_field = mapping[:acronym]
-        grant_field = mapping[:grant_number]
-        "(#{acronym_field} LIKE '*#{query_term}*' OR #{grant_field} LIKE '*#{query_term}*')"
+        search_fields = config[:search_fields] || [:acronym, :grant_number]
+        field_conditions = search_fields.map do |field_key|
+          field_name = mapping[field_key]
+          next unless field_name
+          "#{field_name} #{query_format.gsub('%s', query_term)}"
+        end.compact
+        
+        "(#{field_conditions.join(' OR ')})"
       else
         raise ConnectorError, "Query parameter is required"
       end
     end
     
-    def map_response(data)
-      raise ConnectorError, "No projects found matching search criteria" if data['results'].empty?      
-      mapping = get_dataset_mapping
-      data['results'].map { |result| build_project_data(result, mapping) }     
-    end
-
     def get_dataset_mapping
-      mapping = DATASET_MAPPINGS[params[:dataset_id]]
+      dataset_mappings = LinkedData.settings.anr_dataset_mappings
+      mapping = dataset_mappings[params[:dataset_id]]
       raise ConnectorError, "Unsupported dataset: #{params[:dataset_id]}" unless mapping
       mapping
     end
@@ -81,35 +60,73 @@ def find_matching_project(results, mapping)
     end
 
     def build_project_data(result, mapping)
-      {
-        source: 'ANR',
-        type: 'FundedProject',
-        acronym: result[mapping[:acronym]],
-        name: result[mapping[:name]],
-        description: get_description(result, mapping),
-        homepage: result[mapping[:homepage]],
-        ontologyUsed: [],
-        creator: nil,
-        created: DateTime.now,
-        updated: DateTime.now,
-        keywords: [],
-        contact: nil,
-        institution: nil,
-        coordinator: nil,
-        logo: nil,
-        grant_number: result[mapping[:grant_number]],
-        start_date: result[mapping[:start_date]],
-        end_date: result[mapping[:end_date]],
-        funder: ANR_FUNDER
-      }
+      project = LinkedData::Models::Project.new
+      
+      project.source = LinkedData.settings.anr_connector[:source] || 'ANR'
+      project.type = LinkedData.settings.anr_connector[:project_type] || 'FundedProject'
+      project.acronym = result[mapping[:acronym]]
+      project.name = result[mapping[:name]]
+      project.description = get_description(result, mapping)
+      project.homePage = result[mapping[:homepage]]
+      
+      project.created = DateTime.now
+      project.updated = DateTime.now
+      
+      if mapping[:start_date] && result[mapping[:start_date]]
+        begin
+          project.start_date = DateTime.parse(result[mapping[:start_date]])
+        rescue ArgumentError
+          # Invalid date format
+        end
+      end
+      
+      if mapping[:end_date] && result[mapping[:end_date]]
+        begin
+          project.end_date = DateTime.parse(result[mapping[:end_date]])
+        rescue ArgumentError
+          # Invalid date format
+        end
+      end
+      
+      project.grant_number = result[mapping[:grant_number]]
+      
+      funder_config = LinkedData.settings.anr_connector[:funder]
+      if funder_config
+        funder = LinkedData::Models::Agent.new
+        funder.agentType = funder_config[:agentType]  
+        funder.name = funder_config[:name]
+        funder.homepage = funder_config[:homepage] if funder_config[:homepage]
+        
+        project.funder = funder
+      end
+      
+      project.ontologyUsed = []
+      
+      project
+    end
+
+    def map_response(data)
+      raise ConnectorError, "No projects found matching search criteria" if data['results'].empty?      
+      mapping = get_dataset_mapping
+      data['results'].map { |result| build_project_data(result, mapping) }
     end
 
     def get_description(result, mapping)
-      if params[:dataset_id] == 'ods_france2030-projets'
-        result[mapping[:description]] || result['action_nom_long']
-      else
-        nil
+      # Try the primary description field
+      description = result[mapping[:description]] if mapping[:description]
+      
+      # Try fallbacks if primary is nil
+      if description.nil?
+        fallbacks = LinkedData.settings.anr_connector[:description_fallbacks] || {}
+        dataset_fallbacks = fallbacks[params[:dataset_id]] || []
+        
+        dataset_fallbacks.each do |fallback_field|
+          description = result[fallback_field]
+          break if description
+        end
       end
+      
+      description
     end
   end
 end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
index 39b2c159..b30a0204 100644
--- a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
@@ -1,4 +1,4 @@
-require 'net/http'
+require 'faraday'
 require 'json'
 
 module Connectors
@@ -14,30 +14,28 @@ def initialize
     def fetch_projects(params)
       @params = params
       url = build_url
-      query_params = build_params(params)      
-      uri = URI(url)
-      uri.query = URI.encode_www_form(query_params)
-      response = fetch_data(uri)
+      query_params = build_params(params)
+      response = fetch_data(url, query_params)
       map_response(response)
     end
 
     private
-    def fetch_data(uri)
-      begin        
-        http = Net::HTTP.new(uri.host, uri.port)
-        http.use_ssl = (uri.scheme == 'https')
-        request = Net::HTTP::Get.new(uri)
-        response = http.request(request)
+    def fetch_data(url, query_params)
+      begin
+        response = Faraday.new(url: url).get do |req|
+          req.params.merge!(query_params)
+        end
+        
         handle_response(response)
       rescue StandardError => e
         raise ConnectorError, "External API error: #{e.message}"
       end
     end
     
-    def handle_response(response)      
-      case response
-      when Net::HTTPSuccess
-        content_type = response.content_type || ''
+    def handle_response(response)
+      if response.success?
+        content_type = response.headers['Content-Type'] || ''
+        
         if content_type.include?('xml')
           response.body 
         elsif content_type.include?('json')
@@ -51,7 +49,8 @@ def handle_response(response)
           end
         end
       else
-        raise ConnectorError, "External API returned error: #{response.code}"
+        error_message = "External API returned error: #{response.status}"
+        raise ConnectorError, error_message
       end
     end
 
@@ -71,13 +70,11 @@ def map_response(data)
   
   class Factory
     def self.create(source)
-      case source&.upcase
-      when 'ANR'
-        AnrConnector.new
-      when 'CORDIS'
-        CordisConnector.new
-      else
-        raise ConnectorError, "Unsupported source: #{source}"
+      source_key = source&.upcase
+      if LinkedData.settings.connectors && 
+         LinkedData.settings.connectors[:available_sources] &&
+         LinkedData.settings.connectors[:available_sources][source_key]
+        return LinkedData.settings.connectors[:available_sources][source_key].new
       end
     end
   end
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index e6fe0dec..978745ac 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -7,76 +7,99 @@ class CordisConnector < BaseConnector
     def build_url
       project_id = params[:id]
       raise ConnectorError, "Project ID is required" unless project_id
-      "https://cordis.europa.eu/project/id/#{project_id}"
+      base_url = LinkedData.settings.cordis_connector[:base_url]
+      "#{base_url}/#{project_id}"
     end
 
     def build_params(params)
-      {format: 'xml'}
+      {format: LinkedData.settings.cordis_connector[:format] || 'xml'}
     end
 
     def map_response(xml_data)
       begin
         doc = REXML::Document.new(xml_data)
-        project = doc.elements['project']
+        xml_project = doc.elements['project']
+        
+        raise ConnectorError, "Invalid XML response" unless xml_project
+        project = LinkedData::Models::Project.new
+        
+        project.source = LinkedData.settings.cordis_connector[:source] || 'CORDIS'
+        project.type = LinkedData.settings.cordis_connector[:project_type] || 'FundedProject'
+        project.acronym = xml_project.elements['acronym']&.text
+        project.name = xml_project.elements['title']&.text
+        project.description = xml_project.elements['objective']&.text
+        project.homePage = LinkedData.settings.cordis_connector[:project_url_xpath]
+        
+        project.created = DateTime.now
+        project.updated = DateTime.now
+        
+        if xml_project.elements['startDate']&.text
+          begin
+            project.start_date = DateTime.parse(xml_project.elements['startDate'].text)
+          rescue ArgumentError
+            # Invalid date format
+          end
+        end
+        
+        if xml_project.elements['endDate']&.text
+          begin
+            project.end_date = DateTime.parse(xml_project.elements['endDate'].text)
+          rescue ArgumentError
+            # Invalid date format
+          end
+        end
+        
+        project.keywords = extract_keywords(xml_project)
+        
+        project.grant_number = xml_project.elements['id']&.text
+        
+        funder_config = LinkedData.settings.cordis_connector[:funder]
+        if funder_config
+          funder = LinkedData::Models::Agent.new
+          funder.agentType = "organization"
+          funder.name = funder_config[:name]
+          funder.homepage = funder_config[:homepage] if funder_config[:homepage]
+          
+          project.funder = funder
+        end
+        
+        coordinator_data = extract_coordinator(xml_project)
+        if coordinator_data
+          coordinator = LinkedData::Models::Agent.new
+          coordinator.agentType = "organization"
+          coordinator.name = coordinator_data[:name]
+          coordinator.homepage = coordinator_data[:homepage]
+          project.coordinator = coordinator
+        end
+        
+        project.ontologyUsed = []
+        
+        project
         
-        raise ConnectorError, "Invalid XML response" unless project
-    
-        coordinator = extract_coordinator(project)
-        project_url = extract_project_url(project)
-        keywords = extract_keywords(project)
-        {
-          source: 'CORDIS',
-          type: 'FundedProject',
-          source: 'CORDIS',
-          acronym: project.elements['acronym']&.text,
-          name: project.elements['title']&.text,
-          description: project.elements['objective']&.text,
-          homepage: project_url,
-          ontologyUsed: [],  
-          creator: nil,      
-          created: DateTime.now,  
-          updated: DateTime.now, 
-          keywords: keywords,
-          contact: nil,     
-          institution: nil,  
-          coordinator: coordinator,
-          logo: nil,       
-          grant_number: project.elements['id']&.text,
-          start_date: project.elements['startDate']&.text,
-          end_date: project.elements['endDate']&.text,
-          funder: {
-            type: 'Agent',
-            name: "European Commission",
-            homepage: "https://ec.europa.eu"
-          }
-        }
       rescue REXML::ParseException => e
         raise ConnectorError, "Failed to parse XML: #{e.message}"
       end
     end
 
-    private
-
-    def extract_keywords(project)
-      keywords_text = project.elements['keywords']&.text
+    def extract_keywords(xml_project)
+      keywords_text = xml_project.elements['keywords']&.text
       return [] unless keywords_text
       keywords_text.split(',').map(&:strip)
     end
 
-    private
-
-    def extract_coordinator(project)
-      coord = REXML::XPath.first(project, ".//organization[@type='coordinator']")
+    def extract_coordinator(xml_project)
+      coord_xpath = LinkedData.settings.cordis_connector[:coordinator_xpath] 
+      
+      coord = REXML::XPath.first(xml_project, coord_xpath)
       return nil unless coord
+      
+      name_element = LinkedData.settings.cordis_connector[:coordinator_name_element]
+      url_element = LinkedData.settings.cordis_connector[:coordinator_url_element] 
+      
       {
-        name: coord.elements['legalName']&.text,
-        homepage: coord.elements['address/url']&.text
+        name: coord.elements[name_element]&.text,
+        homepage: coord.elements[url_element]&.text
       }
     end
-
-    def extract_project_url(project)
-      web_link = REXML::XPath.first(project, ".//webLink[@represents='project']/physUrl")
-      web_link&.text || "https://cordis.europa.eu/project/id/#{project.elements['id']&.text}"
-    end
   end
 end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index f4658562..75d212c1 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -103,6 +103,80 @@ def config(&block)
     # number of threads to use when indexing a single ontology for search
     @settings.indexing_num_threads          ||= 1
 
+
+
+    # Global connector configuration
+    @settings.connectors ||= {
+      available_sources: {
+        'ANR' => Connectors::AnrConnector,
+        'CORDIS' => Connectors::CordisConnector
+      }
+    }
+    @settings.project_sources ||= ["ANR", "CORDIS"]
+    @settings.project_types ||= ["FundedProject", "NonFundedProject"]
+
+    # CORDIS Connector Configuration
+    @settings.cordis_connector ||= {
+      base_url: "https://cordis.europa.eu/project/id",
+      format: "xml",
+      source: 'CORDIS',
+      project_type: 'FundedProject',
+      coordinator_xpath: ".//organization[@type='coordinator']",
+      coordinator_name_element: 'legalName',
+      coordinator_url_element: 'address/url',
+      project_url_xpath: ".//webLink[@represents='project']/physUrl",
+      funder: {
+        name: "European Commission",
+        homepage: "https://ec.europa.eu"
+      }
+    }
+
+    # ANR Connector Configuration
+    @settings.anr_connector ||= {
+      base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets",
+      default_limit: 20,
+      min_query_length: 3,
+      source: 'ANR',
+      project_type: 'FundedProject',
+      query_format: "LIKE '*%s*'", 
+      search_fields: [:acronym, :grant_number, :name], 
+      description_fallbacks: {
+        'ods_france2030-projets' => ['action_nom_long', 'description'],
+        'aapg-projets' => ['objectifs', 'abstract'] 
+      },
+      funder: {
+        agentType: 'organization',
+        name: "Agence Nationale de la Recherche",
+        homepage: "https://anr.fr"
+      }
+    }
+
+    # ANR Connector Dataset Mappings
+    @settings.anr_dataset_mappings          ||= {
+      'ods_france2030-projets' => {
+        acronym: 'acronyme',
+        name: 'action_nom',
+        description: 'resume',
+        homepage: 'lien',
+        grant_number: 'eotp_projet',
+        start_date: 'date_debut_projet',
+        end_date: 'date_fin',
+        region: 'region_du_projet',
+        year: 'annee_de_contractualisation'
+      },
+      'aapg-projets' => {
+        acronym: 'acronyme_projet',
+        name: 'intitule_complet_du_comite',
+        description: nil,
+        homepage: 'lien',
+        grant_number: 'code_projet_anr',
+        start_date: nil,
+        end_date: nil,
+        region: 'libelle_de_region_tutelle_hebergeante',
+        year: 'edition'
+      }
+    }
+
     # Override defaults
     yield @settings, overide_connect_goo if block_given?
 
diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index ff587b17..04513705 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -1,23 +1,27 @@
-\
 module LinkedData
   module Models
     class Project < LinkedData::Models::Base
       model :project, :name_with => :acronym
+      
+      def self.project_sources
+        LinkedData.settings.project_sources
+      end
 
-      PROJECT_TYPES = ["FundedProject", "NonFundedProject"]
-      PROJECT_SOURCES = ["ANR", "CORDIS"]
+      def self.project_types
+        LinkedData.settings.project_types
+      end
 
       # Required attributes
       attribute :acronym, enforce: [:unique, :existence]
       attribute :creator, enforce: [:existence, :user, :list]
       attribute :created, enforce: [:date_time], :default => lambda {|x| DateTime.now }
       attribute :updated, enforce: [:date_time], :default => lambda {|x| DateTime.now }
-      attribute :type, enforce: [:existence], enforcedValues: PROJECT_TYPES
+      attribute :type, enforce: [:existence], enforcedValues: lambda { self.project_types }
       attribute :name, enforce: [:existence]
       attribute :homePage, enforce: [:uri, :existence]
       attribute :description, enforce: [:existence]
       attribute :ontologyUsed, enforce: [:ontology, :list, :existence]
-      attribute :source, enforce: [:existence], enforcedValues: PROJECT_SOURCES
+      attribute :source, enforce: [:existence], enforcedValues: lambda { self.project_sources }
       
       # Optional attributes
       attribute :keywords, enforce: [:list]
@@ -43,7 +47,7 @@ class Project < LinkedData::Models::Base
       access_control_load :creator
 
       def self.valid_project_type?(type)
-        PROJECT_TYPES.include?(type)
+        self.project_types.include?(type)
       end
     end
   end

From 370a0c15d9197cd4aac3f7f1bbd62d6945ce2745 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Tue, 11 Mar 2025 11:28:12 +0100
Subject: [PATCH 22/66] add search by acronym for cordis

---
 .../concerns/connectors/anr_connector.rb      |  50 ++--
 .../concerns/connectors/cordis_connector.rb   | 227 ++++++++++++------
 lib/ontologies_linked_data/config/config.rb   |  10 +-
 3 files changed, 199 insertions(+), 88 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index e32d699f..c1911f7f 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -12,12 +12,9 @@ def build_url
     end
 
     def build_params(params)
-      raise ConnectorError, "Query parameter is required" unless params[:query]
-
-      # validate query length
-      query = params[:query].to_s.strip
-      min_query_length = LinkedData.settings.anr_connector[:min_query_length]
-      raise ConnectorError, "Query must be at least #{min_query_length} characters long" if query.length < min_query_length
+      if !params[:id] && !params[:acronym]
+        raise ConnectorError, "Either project ID or acronym is required"
+      end
       
       {
         limit: params[:limit] || LinkedData.settings.anr_connector[:default_limit],
@@ -28,22 +25,29 @@ def build_params(params)
     def build_query_conditions(params)
       mapping = get_dataset_mapping
       config = LinkedData.settings.anr_connector
-      query_format = config[:query_format] || "LIKE '*%s*'"
-      if params[:query]
-        query_term = params[:query]
-        search_fields = config[:search_fields] || [:acronym, :grant_number]
-        field_conditions = search_fields.map do |field_key|
-          field_name = mapping[field_key]
-          next unless field_name
-          "#{field_name} #{query_format.gsub('%s', query_term)}"
-        end.compact
+      query_format = config[:query_format]
+      
+      if params[:id]
+        # exact ID match
+        id = params[:id].to_s.strip
+        field_name = mapping[:grant_number]
+        raise ConnectorError, "Grant number field not defined in mapping" unless field_name
+        
+        "#{field_name} = '#{id}'"
+      elsif params[:acronym]
+        # acronym search 
+        acronym_term = params[:acronym].to_s.strip
+        raise ConnectorError, "Acronym must be at least #{config[:min_acronym_length]} characters long" if acronym_term.length < config[:min_acronym_length]
+        
+        field_name = mapping[:acronym]
+        raise ConnectorError, "Acronym field not defined in mapping" unless field_name
         
-        "(#{field_conditions.join(' OR ')})"
+        "#{field_name} LIKE '*#{acronym_term}*'"
       else
-        raise ConnectorError, "Query parameter is required"
+        raise ConnectorError, "Either project ID or acronym is required"
       end
     end
-    
+        
     def get_dataset_mapping
       dataset_mappings = LinkedData.settings.anr_dataset_mappings
       mapping = dataset_mappings[params[:dataset_id]]
@@ -106,9 +110,15 @@ def build_project_data(result, mapping)
     end
 
     def map_response(data)
-      raise ConnectorError, "No projects found matching search criteria" if data['results'].empty?      
+      raise ConnectorError, "No projects found matching search criteria" if data['results'].empty?
+      
       mapping = get_dataset_mapping
-      data['results'].map { |result| build_project_data(result, mapping) }
+      projects = data['results'].map { |result| build_project_data(result, mapping) }
+      
+      {
+        count: projects.length,
+        projects: projects
+      }
     end
 
     def get_description(result, mapping)
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 978745ac..008ce00b 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -5,82 +5,163 @@ class CordisConnector < BaseConnector
     private
 
     def build_url
-      project_id = params[:id]
-      raise ConnectorError, "Project ID is required" unless project_id
-      base_url = LinkedData.settings.cordis_connector[:base_url]
-      "#{base_url}/#{project_id}"
+      if params[:id]
+        base_url = LinkedData.settings.cordis_connector[:base_url] 
+        "#{base_url}/#{params[:id]}"
+      else
+        LinkedData.settings.cordis_connector[:search_url]
+      end
     end
 
     def build_params(params)
-      {format: LinkedData.settings.cordis_connector[:format] || 'xml'}
+      if params[:id]
+        { format: LinkedData.settings.cordis_connector[:format] }
+      elsif params[:acronym]
+        acronym = params[:acronym].to_s.strip
+        min_acronym_length = LinkedData.settings.cordis_connector[:min_acronym_length] 
+        raise ConnectorError, "Acronym must be at least #{min_acronym_length} characters long" if acronym.length < min_acronym_length
+        query = "contenttype='project'"
+        query += " AND acronym='#{acronym}'"
+        {
+          q: query,
+          p: params[:page] || 1,
+          num: params[:limit] || LinkedData.settings.cordis_connector[:default_limit],
+          format: LinkedData.settings.cordis_connector[:format]
+        }
+      else
+        raise ConnectorError, "Either project ID or acronym is required"
+      end
+    end
+
+    def map_single_project(xml_project)
+      project = LinkedData::Models::Project.new
+      
+      project.source = LinkedData.settings.cordis_connector[:source]
+      project.type = LinkedData.settings.cordis_connector[:project_type]
+      project.acronym = xml_project.elements['acronym']&.text
+      project.name = xml_project.elements['title']&.text
+      project.description = xml_project.elements['objective']&.text
+      
+      if url_xpath = LinkedData.settings.cordis_connector[:project_url_xpath]
+        url_element = REXML::XPath.first(xml_project, url_xpath)
+        project.homePage = url_element&.text || build_default_homepage(xml_project)
+      else
+        project.homePage = build_default_homepage(xml_project)
+      end
+      
+      project.created = DateTime.now
+      project.updated = DateTime.now
+      
+      start_date_field = LinkedData.settings.cordis_connector[:start_date_field] 
+      end_date_field = LinkedData.settings.cordis_connector[:end_date_field]
+      
+      if xml_project.elements[start_date_field]&.text
+        begin
+          project.start_date = DateTime.parse(xml_project.elements[start_date_field].text)
+        rescue ArgumentError
+          # Invalid date format
+        end
+      end
+      
+      if xml_project.elements[end_date_field]&.text
+        begin
+          project.end_date = DateTime.parse(xml_project.elements[end_date_field].text)
+        rescue ArgumentError
+          # Invalid date format
+        end
+      end
+
+      
+  
+      
+      keyword_field = LinkedData.settings.cordis_connector[:keyword_field] 
+      project.keywords = extract_keywords(xml_project)
+      
+      grant_number = LinkedData.settings.cordis_connector[:grant_number]
+      project.grant_number = xml_project.elements[grant_number]&.text
+      
+      coord_data = extract_coordinator(xml_project)
+      if coord_data
+        coordinator = LinkedData::Models::Agent.new
+        coordinator.agentType = "organization"
+        coordinator.name = coord_data[:name]
+        coordinator.homepage = coord_data[:homepage]
+        project.coordinator = coordinator
+      end
+      
+      funder_config = LinkedData.settings.cordis_connector[:funder]
+      if funder_config
+        funder = LinkedData::Models::Agent.new
+        funder.agentType = funder_config[:agentType]
+        funder.name = funder_config[:name]
+        funder.homepage = funder_config[:homepage] if funder_config[:homepage]
+        project.funder = funder
+      end
+      
+      project.ontologyUsed = []
+      
+      project
     end
 
     def map_response(xml_data)
       begin
         doc = REXML::Document.new(xml_data)
-        xml_project = doc.elements['project']
         
-        raise ConnectorError, "Invalid XML response" unless xml_project
-        project = LinkedData::Models::Project.new
-        
-        project.source = LinkedData.settings.cordis_connector[:source] || 'CORDIS'
-        project.type = LinkedData.settings.cordis_connector[:project_type] || 'FundedProject'
-        project.acronym = xml_project.elements['acronym']&.text
-        project.name = xml_project.elements['title']&.text
-        project.description = xml_project.elements['objective']&.text
-        project.homePage = LinkedData.settings.cordis_connector[:project_url_xpath]
-        
-        project.created = DateTime.now
-        project.updated = DateTime.now
-        
-        if xml_project.elements['startDate']&.text
-          begin
-            project.start_date = DateTime.parse(xml_project.elements['startDate'].text)
-          rescue ArgumentError
-            # Invalid date format
+        if doc.elements['project'] && params[:id]
+          project = map_single_project(doc.elements['project'])
+          return {
+            count: 1,
+            projects: [project]
+          }
+        elsif doc.elements['response']
+          total_hits = doc.elements['response/result/header/totalHits']&.text.to_i
+          projects = []
+          
+          REXML::XPath.each(doc, '//hit/project') do |project_xml|
+            projects << map_single_project(project_xml)
           end
-        end
-        
-        if xml_project.elements['endDate']&.text
-          begin
-            project.end_date = DateTime.parse(xml_project.elements['endDate'].text)
-          rescue ArgumentError
-            # Invalid date format
+          
+          if projects.empty?
+            raise ConnectorError, "No projects found matching acronym: #{params[:acronym]}"
           end
-        end
-        
-        project.keywords = extract_keywords(xml_project)
-        
-        project.grant_number = xml_project.elements['id']&.text
-        
-        funder_config = LinkedData.settings.cordis_connector[:funder]
-        if funder_config
-          funder = LinkedData::Models::Agent.new
-          funder.agentType = "organization"
-          funder.name = funder_config[:name]
-          funder.homepage = funder_config[:homepage] if funder_config[:homepage]
           
-          project.funder = funder
-        end
-        
-        coordinator_data = extract_coordinator(xml_project)
-        if coordinator_data
-          coordinator = LinkedData::Models::Agent.new
-          coordinator.agentType = "organization"
-          coordinator.name = coordinator_data[:name]
-          coordinator.homepage = coordinator_data[:homepage]
-          project.coordinator = coordinator
+          # filter results for word-based matching for a better matching and reduce response size
+          if params[:acronym]
+            search_terms = params[:acronym].downcase.split(/\s+/)
+            filtered_projects = projects.select do |project|
+              if project.acronym
+                project_words = project.acronym.downcase.split(/\s+/)
+                search_terms.any? do |term|
+                  project_words.any? { |word| word.start_with?(term) || term.start_with?(word) }
+                end
+              else
+                false
+              end
+            end
+            projects = filtered_projects if filtered_projects.any?
+          end
+          
+          return {
+            count: projects.length, 
+            projects: projects
+          }
+        else
+          raise ConnectorError, "Invalid XML response format"
         end
         
-        project.ontologyUsed = []
-        
-        project
-        
       rescue REXML::ParseException => e
         raise ConnectorError, "Failed to parse XML: #{e.message}"
       end
     end
 
+    def build_default_homepage(xml_project)
+      base_url = LinkedData.settings.cordis_connector[:project_base_url]
+      grant_number = LinkedData.settings.cordis_connector[:grant_number]
+      project_id = xml_project.elements[grant_number]&.text
+      
+      "#{base_url}/#{project_id}"
+    end
+    
     def extract_keywords(xml_project)
       keywords_text = xml_project.elements['keywords']&.text
       return [] unless keywords_text
@@ -88,18 +169,30 @@ def extract_keywords(xml_project)
     end
 
     def extract_coordinator(xml_project)
-      coord_xpath = LinkedData.settings.cordis_connector[:coordinator_xpath] 
-      
-      coord = REXML::XPath.first(xml_project, coord_xpath)
-      return nil unless coord
+      coordinator = REXML::XPath.first(xml_project, ".//relations/associations/organization[@type='coordinator']")
       
-      name_element = LinkedData.settings.cordis_connector[:coordinator_name_element]
-      url_element = LinkedData.settings.cordis_connector[:coordinator_url_element] 
+      if coordinator
+        return {
+          name: coordinator.elements['legalName']&.text,
+          homepage: coordinator.elements['address/url']&.text
+        }
+      end
       
-      {
-        name: coord.elements[name_element]&.text,
-        homepage: coord.elements[url_element]&.text
-      }
+      # Fallback to the original coordinator extraction if available
+      coord_xpath = LinkedData.settings.cordis_connector[:coordinator_xpath]
+      if coord_xpath
+        coord = REXML::XPath.first(xml_project, coord_xpath)
+        if coord
+          name_element = LinkedData.settings.cordis_connector[:coordinator_name_element]
+          url_element = LinkedData.settings.cordis_connector[:coordinator_url_element]
+          
+          return {
+            name: coord.elements[name_element]&.text,
+            homepage: coord.elements[url_element]&.text
+          }
+        end
+      end
+      nil
     end
   end
 end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index 75d212c1..7d2aeed0 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -118,6 +118,7 @@ def config(&block)
     # CORDIS Connector Configuration
     @settings.cordis_connector ||= {
       base_url: "https://cordis.europa.eu/project/id",
+      search_url: "https://cordis.europa.eu/search",
       format: "xml",
       source: 'CORDIS',
       project_type: 'FundedProject',
@@ -125,6 +126,13 @@ def config(&block)
       coordinator_name_element: 'legalName',
       coordinator_url_element: 'address/url',
       project_url_xpath: ".//webLink[@represents='project']/physUrl",
+      start_date_field: 'startDate',
+      end_date_field: 'endDate',
+      keyword_field: 'keywords',
+      grant_number: 'id',                 
+      project_base_url: 'https://cordis.europa.eu/project', 
+      min_acronym_length: 3,                 
+      default_limit: 10,                  
       funder: {
         name: "European Commission",
         homepage: "https://ec.europa.eu"
@@ -135,7 +143,7 @@ def config(&block)
     @settings.anr_connector ||= {
       base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets",
       default_limit: 20,
-      min_query_length: 3,
+      min_acronym_length: 3,
       source: 'ANR',
       project_type: 'FundedProject',
       query_format: "LIKE '*%s*'", 

From 2934993706e5a7325440b03a567b31e015ee07b4 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Thu, 13 Mar 2025 14:50:25 +0100
Subject: [PATCH 23/66] optimize cordis search

---
 .../concerns/connectors/cordis_connector.rb   | 22 +------------------
 1 file changed, 1 insertion(+), 21 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 008ce00b..9336ba0b 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -21,7 +21,7 @@ def build_params(params)
         min_acronym_length = LinkedData.settings.cordis_connector[:min_acronym_length] 
         raise ConnectorError, "Acronym must be at least #{min_acronym_length} characters long" if acronym.length < min_acronym_length
         query = "contenttype='project'"
-        query += " AND acronym='#{acronym}'"
+        query += " AND (acronym='#{acronym}*' OR acronym='* #{acronym}*' OR acronym='*-#{acronym}*' OR acronym='*_#{acronym}*')"
         {
           q: query,
           p: params[:page] || 1,
@@ -70,9 +70,6 @@ def map_single_project(xml_project)
           # Invalid date format
         end
       end
-
-      
-  
       
       keyword_field = LinkedData.settings.cordis_connector[:keyword_field] 
       project.keywords = extract_keywords(xml_project)
@@ -124,23 +121,6 @@ def map_response(xml_data)
           if projects.empty?
             raise ConnectorError, "No projects found matching acronym: #{params[:acronym]}"
           end
-          
-          # filter results for word-based matching for a better matching and reduce response size
-          if params[:acronym]
-            search_terms = params[:acronym].downcase.split(/\s+/)
-            filtered_projects = projects.select do |project|
-              if project.acronym
-                project_words = project.acronym.downcase.split(/\s+/)
-                search_terms.any? do |term|
-                  project_words.any? { |word| word.start_with?(term) || term.start_with?(word) }
-                end
-              else
-                false
-              end
-            end
-            projects = filtered_projects if filtered_projects.any?
-          end
-          
           return {
             count: projects.length, 
             projects: projects

From 111dc2a04489a2c712777586796c519195408bf5 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Thu, 13 Mar 2025 14:55:47 +0100
Subject: [PATCH 24/66] fix: add correct type uri for the root endpoint (#199)

---
 .../models/mod/semantic_artefact_catalog.rb                   | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index 46787f32..e010a104 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -130,6 +130,10 @@ class SemanticArtefactCatalog < LinkedData::Models::Base
                               :landingPage, :keyword, :bibliographicCitation, :created, :modified , :contactPoint, :creator, :contributor, 
                               :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL
 
+            def self.type_uri
+                namespace[model_name].to_s
+            end
+            
             def ontologies_count
                 LinkedData::Models::Ontology.where(viewingRestriction: 'public').count
             end

From 1e7e6a54f56d1ce73e129b79b949e492a11bc763 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 14 Mar 2025 11:07:46 +0100
Subject: [PATCH 25/66] Feature: add link_to to catalog (#200)

---
 .../models/mod/semantic_artefact_catalog.rb   | 42 +++++++++++++++++++
 .../models/users/user.rb                      |  1 +
 2 files changed, 43 insertions(+)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index e010a104..a6331fca 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -1,4 +1,18 @@
 require 'yaml'
+require 'ontologies_linked_data/models/ontology'
+require 'ontologies_linked_data/models/project'
+require 'ontologies_linked_data/models/notes/note'
+require 'ontologies_linked_data/models/users/user'
+require 'ontologies_linked_data/models/agents/agent'
+require 'ontologies_linked_data/models/group'
+require 'ontologies_linked_data/models/slice'
+require 'ontologies_linked_data/models/mappings/mapping'
+require 'ontologies_linked_data/models/project'
+require 'ontologies_linked_data/models/category'
+require 'ontologies_linked_data/models/provisional_class'
+require 'ontologies_linked_data/models/provisional_relation'
+require 'ontologies_linked_data/models/metric'
+require 'ontologies_linked_data/models/review'
 
 module LinkedData
     module Models
@@ -125,6 +139,34 @@ class SemanticArtefactCatalog < LinkedData::Models::Base
                 attribute attr_name, namespace: :mod, enforce: [:integer], handler: handler
                 define_method(handler) { calculate_attr_from_metrics(mapped_to) }
             end
+
+            link_to LinkedData::Hypermedia::Link.new("doc/legacy-api", lambda {|s| "documentation"}, nil),
+                    LinkedData::Hypermedia::Link.new("doc/mod-api", lambda {|s| "doc/api"}, nil),
+                    LinkedData::Hypermedia::Link.new("ontologies", lambda {|s| "ontologies"},  LinkedData::Models::Ontology.type_uri),
+                    LinkedData::Hypermedia::Link.new("ontologies_full", lambda {|s| "ontologies_full"}, LinkedData::Models::Ontology.type_uri),
+                    LinkedData::Hypermedia::Link.new("ontology_metadata", lambda {|s| "ontology_metadata"}, nil),
+                    LinkedData::Hypermedia::Link.new("submissions", lambda {|s| "submissions"}, LinkedData::Models::OntologySubmission.type_uri),
+                    LinkedData::Hypermedia::Link.new("submission_metadata", lambda {|s| "submission_metadata"}, nil),
+                    LinkedData::Hypermedia::Link.new("artefacts", lambda {|s| "artefacts"}, LinkedData::Models::SemanticArtefact.type_uri),
+                    LinkedData::Hypermedia::Link.new("records", lambda {|s| "records"}, nil),
+                    LinkedData::Hypermedia::Link.new("users", lambda {|s| "users"}, LinkedData::Models::User.type_uri),
+                    LinkedData::Hypermedia::Link.new("agents", lambda {|s| "agents"}, LinkedData::Models::Agent.type_uri),
+                    LinkedData::Hypermedia::Link.new("groups", lambda {|s| "groups"}, LinkedData::Models::Group.type_uri),
+                    LinkedData::Hypermedia::Link.new("slices", lambda {|s| "slices"}, LinkedData::Models::Slice.type_uri),
+                    LinkedData::Hypermedia::Link.new("mappings", lambda {|s| "mappings"}, LinkedData::Models::Mapping.type_uri.to_s),
+                    LinkedData::Hypermedia::Link.new("projects", lambda {|s| "projects"}, LinkedData::Models::Project.type_uri),
+                    LinkedData::Hypermedia::Link.new("categories", lambda {|s| "categories"}, LinkedData::Models::Category.type_uri),
+                    LinkedData::Hypermedia::Link.new("provisional_classes", lambda {|s| "provisional_classes"}, LinkedData::Models::ProvisionalClass.type_uri),
+                    LinkedData::Hypermedia::Link.new("provisional_relations", lambda {|s| "provisional_relations"}, LinkedData::Models::ProvisionalRelation.type_uri),
+                    LinkedData::Hypermedia::Link.new("metrics", lambda {|s| "metrics"}, LinkedData::Models::Metric.type_uri),
+                    LinkedData::Hypermedia::Link.new("analytics", lambda {|s| "analytics"}, nil),
+                    LinkedData::Hypermedia::Link.new("search", lambda {|s| "search"}, nil),
+                    LinkedData::Hypermedia::Link.new("property_search", lambda {|s| "property_search"}, nil),
+                    LinkedData::Hypermedia::Link.new("recommender", lambda {|s| "recommender"}, nil),
+                    LinkedData::Hypermedia::Link.new("annotator", lambda {|s| "annotator"}, nil),
+                    LinkedData::Hypermedia::Link.new("notes", lambda {|s| "notes"}, LinkedData::Models::Note.type_uri),
+                    LinkedData::Hypermedia::Link.new("replies", lambda {|s| "replies"}, LinkedData::Models::Notes::Reply.type_uri),
+                    LinkedData::Hypermedia::Link.new("reviews", lambda {|s| "reviews"}, LinkedData::Models::Review.type_uri)
               
             serialize_default :acronym, :title, :identifier, :status, :language, :type, :accessRights, :license, :rightsHolder, :description,
                               :landingPage, :keyword, :bibliographicCitation, :created, :modified , :contactPoint, :creator, :contributor, 
diff --git a/lib/ontologies_linked_data/models/users/user.rb b/lib/ontologies_linked_data/models/users/user.rb
index 1ddf7fa7..dfd863dd 100644
--- a/lib/ontologies_linked_data/models/users/user.rb
+++ b/lib/ontologies_linked_data/models/users/user.rb
@@ -3,6 +3,7 @@
 require 'ontologies_linked_data/models/users/authentication'
 require 'ontologies_linked_data/models/users/role'
 require 'ontologies_linked_data/models/users/subscription'
+require 'ontologies_linked_data/models/users/oauth_authentication'
 
 module LinkedData
   module Models

From 11bf507999651a030cb5550423ce67fb301667f4 Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Fri, 14 Mar 2025 16:43:49 +0100
Subject: [PATCH 26/66] fix: return no user if the email is nil in github oauth
 (#196)

---
 lib/ontologies_linked_data/models/users/oauth_authentication.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/users/oauth_authentication.rb b/lib/ontologies_linked_data/models/users/oauth_authentication.rb
index ac4bdf0a..d4f4ec75 100644
--- a/lib/ontologies_linked_data/models/users/oauth_authentication.rb
+++ b/lib/ontologies_linked_data/models/users/oauth_authentication.rb
@@ -70,7 +70,7 @@ def auth_create_user(user_data)
           end
 
           def user_by_email(email)
-            LinkedData::Models::User.where(email: email).first
+            LinkedData::Models::User.where(email: email).first unless email.nil?
           end
 
           def user_from_orcid_data(user_data)

From 81b0719de0f138b3ff864b622038a2cb1071fb7e Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Mon, 17 Mar 2025 09:50:27 +0100
Subject: [PATCH 27/66] global configs for connectors

---
 .../concerns/connectors/anr_connector.rb      |  23 ++-
 .../concerns/connectors/base_connector.rb     |  12 +-
 .../concerns/connectors/cordis_connector.rb   |  38 ++---
 lib/ontologies_linked_data/config/config.rb   | 153 +++++++++---------
 4 files changed, 121 insertions(+), 105 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index c1911f7f..2f9f5f15 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -5,9 +5,9 @@ class AnrConnector < BaseConnector
     private
     
     def build_url
-      dataset_id = params[:dataset_id]
-      raise ConnectorError, "Dataset ID is required" unless dataset_id
-      base_url = LinkedData.settings.anr_connector[:base_url]
+      dataset_id = connector_config[:dataset_id]
+      raise ConnectorError, "Dataset ID not configured" unless dataset_id
+      base_url = connector_config[:base_url]
       "#{base_url}/#{dataset_id}/records"
     end
 
@@ -17,14 +17,14 @@ def build_params(params)
       end
       
       {
-        limit: params[:limit] || LinkedData.settings.anr_connector[:default_limit],
+        limit: params[:limit] || connector_config[:default_limit],
         where: build_query_conditions(params)
       }
     end
 
     def build_query_conditions(params)
       mapping = get_dataset_mapping
-      config = LinkedData.settings.anr_connector
+      config = connector_config
       query_format = config[:query_format]
       
       if params[:id]
@@ -49,10 +49,7 @@ def build_query_conditions(params)
     end
         
     def get_dataset_mapping
-      dataset_mappings = LinkedData.settings.anr_dataset_mappings
-      mapping = dataset_mappings[params[:dataset_id]]
-      raise ConnectorError, "Unsupported dataset: #{params[:dataset_id]}" unless mapping
-      mapping
+      connector_config[:field_mappings]
     end
 
     def find_matching_project(results, mapping)
@@ -66,8 +63,8 @@ def find_matching_project(results, mapping)
     def build_project_data(result, mapping)
       project = LinkedData::Models::Project.new
       
-      project.source = LinkedData.settings.anr_connector[:source] || 'ANR'
-      project.type = LinkedData.settings.anr_connector[:project_type] || 'FundedProject'
+      project.source = connector_config[:source] || 'ANR'
+      project.type = connector_config[:project_type] || 'FundedProject'
       project.acronym = result[mapping[:acronym]]
       project.name = result[mapping[:name]]
       project.description = get_description(result, mapping)
@@ -94,7 +91,7 @@ def build_project_data(result, mapping)
       
       project.grant_number = result[mapping[:grant_number]]
       
-      funder_config = LinkedData.settings.anr_connector[:funder]
+      funder_config = connector_config[:funder]
       if funder_config
         funder = LinkedData::Models::Agent.new
         funder.agentType = funder_config[:agentType]  
@@ -127,7 +124,7 @@ def get_description(result, mapping)
       
       # Try fallbacks if primary is nil
       if description.nil?
-        fallbacks = LinkedData.settings.anr_connector[:description_fallbacks] || {}
+        fallbacks = connector_config[:description_fallbacks] || {}
         dataset_fallbacks = fallbacks[params[:dataset_id]] || []
         
         dataset_fallbacks.each do |fallback_field|
diff --git a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
index b30a0204..adeb4cbd 100644
--- a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
@@ -6,9 +6,16 @@ class ConnectorError < StandardError; end
 
   class BaseConnector
     attr_reader :params
+    attr_accessor :connector_key
 
     def initialize
       @params = {}
+      @connector_key = nil
+    end
+
+    def connector_config
+      return {} unless @connector_key
+      LinkedData.settings.connectors[:configs][@connector_key] || {}
     end
 
     def fetch_projects(params)
@@ -74,8 +81,11 @@ def self.create(source)
       if LinkedData.settings.connectors && 
          LinkedData.settings.connectors[:available_sources] &&
          LinkedData.settings.connectors[:available_sources][source_key]
-        return LinkedData.settings.connectors[:available_sources][source_key].new
+        connector = LinkedData.settings.connectors[:available_sources][source_key].new
+        connector.connector_key = source_key
+        return connector
       end
+      raise ConnectorError, "Unsupported source: #{source}"
     end
   end
 end
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 9336ba0b..5fad5f92 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -6,27 +6,27 @@ class CordisConnector < BaseConnector
 
     def build_url
       if params[:id]
-        base_url = LinkedData.settings.cordis_connector[:base_url] 
+        base_url = connector_config[:base_url] 
         "#{base_url}/#{params[:id]}"
       else
-        LinkedData.settings.cordis_connector[:search_url]
+        connector_config[:search_url]
       end
     end
 
     def build_params(params)
       if params[:id]
-        { format: LinkedData.settings.cordis_connector[:format] }
+        { format: connector_config[:format] }
       elsif params[:acronym]
         acronym = params[:acronym].to_s.strip
-        min_acronym_length = LinkedData.settings.cordis_connector[:min_acronym_length] 
+        min_acronym_length = connector_config[:min_acronym_length] 
         raise ConnectorError, "Acronym must be at least #{min_acronym_length} characters long" if acronym.length < min_acronym_length
         query = "contenttype='project'"
         query += " AND (acronym='#{acronym}*' OR acronym='* #{acronym}*' OR acronym='*-#{acronym}*' OR acronym='*_#{acronym}*')"
         {
           q: query,
           p: params[:page] || 1,
-          num: params[:limit] || LinkedData.settings.cordis_connector[:default_limit],
-          format: LinkedData.settings.cordis_connector[:format]
+          num: params[:limit] || connector_config[:default_limit],
+          format: connector_config[:format]
         }
       else
         raise ConnectorError, "Either project ID or acronym is required"
@@ -36,13 +36,13 @@ def build_params(params)
     def map_single_project(xml_project)
       project = LinkedData::Models::Project.new
       
-      project.source = LinkedData.settings.cordis_connector[:source]
-      project.type = LinkedData.settings.cordis_connector[:project_type]
+      project.source = connector_config[:source]
+      project.type = connector_config[:project_type]
       project.acronym = xml_project.elements['acronym']&.text
       project.name = xml_project.elements['title']&.text
       project.description = xml_project.elements['objective']&.text
       
-      if url_xpath = LinkedData.settings.cordis_connector[:project_url_xpath]
+      if url_xpath = connector_config[:project_url_xpath]
         url_element = REXML::XPath.first(xml_project, url_xpath)
         project.homePage = url_element&.text || build_default_homepage(xml_project)
       else
@@ -52,8 +52,8 @@ def map_single_project(xml_project)
       project.created = DateTime.now
       project.updated = DateTime.now
       
-      start_date_field = LinkedData.settings.cordis_connector[:start_date_field] 
-      end_date_field = LinkedData.settings.cordis_connector[:end_date_field]
+      start_date_field = connector_config[:start_date_field] 
+      end_date_field = connector_config[:end_date_field]
       
       if xml_project.elements[start_date_field]&.text
         begin
@@ -71,10 +71,10 @@ def map_single_project(xml_project)
         end
       end
       
-      keyword_field = LinkedData.settings.cordis_connector[:keyword_field] 
+      keyword_field = connector_config[:keyword_field] 
       project.keywords = extract_keywords(xml_project)
       
-      grant_number = LinkedData.settings.cordis_connector[:grant_number]
+      grant_number = connector_config[:grant_number]
       project.grant_number = xml_project.elements[grant_number]&.text
       
       coord_data = extract_coordinator(xml_project)
@@ -86,7 +86,7 @@ def map_single_project(xml_project)
         project.coordinator = coordinator
       end
       
-      funder_config = LinkedData.settings.cordis_connector[:funder]
+      funder_config = connector_config[:funder]
       if funder_config
         funder = LinkedData::Models::Agent.new
         funder.agentType = funder_config[:agentType]
@@ -135,8 +135,8 @@ def map_response(xml_data)
     end
 
     def build_default_homepage(xml_project)
-      base_url = LinkedData.settings.cordis_connector[:project_base_url]
-      grant_number = LinkedData.settings.cordis_connector[:grant_number]
+      base_url = connector_config[:project_base_url]
+      grant_number = connector_config[:grant_number]
       project_id = xml_project.elements[grant_number]&.text
       
       "#{base_url}/#{project_id}"
@@ -159,12 +159,12 @@ def extract_coordinator(xml_project)
       end
       
       # Fallback to the original coordinator extraction if available
-      coord_xpath = LinkedData.settings.cordis_connector[:coordinator_xpath]
+      coord_xpath = connector_config[:coordinator_xpath]
       if coord_xpath
         coord = REXML::XPath.first(xml_project, coord_xpath)
         if coord
-          name_element = LinkedData.settings.cordis_connector[:coordinator_name_element]
-          url_element = LinkedData.settings.cordis_connector[:coordinator_url_element]
+          name_element = connector_config[:coordinator_name_element]
+          url_element = connector_config[:coordinator_url_element]
           
           return {
             name: coord.elements[name_element]&.text,
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index 7d2aeed0..d85e420d 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -108,80 +108,89 @@ def config(&block)
     # Global connector configuration
     @settings.connectors ||= {
       available_sources: {
-        'ANR' => Connectors::AnrConnector,
+        'ANR_FRANCE2030' => Connectors::AnrConnector,
+        'ANR_AAPG' => Connectors::AnrConnector,
         'CORDIS' => Connectors::CordisConnector
-      }
-    }
-    @settings.project_sources ||= ["ANR", "CORDIS"]
-    @settings.project_types ||= ["FundedProject", "NonFundedProject"]
-
-    # CORDIS Connector Configuration
-    @settings.cordis_connector ||= {
-      base_url: "https://cordis.europa.eu/project/id",
-      search_url: "https://cordis.europa.eu/search",
-      format: "xml",
-      source: 'CORDIS',
-      project_type: 'FundedProject',
-      coordinator_xpath: ".//organization[@type='coordinator']",
-      coordinator_name_element: 'legalName',
-      coordinator_url_element: 'address/url',
-      project_url_xpath: ".//webLink[@represents='project']/physUrl",
-      start_date_field: 'startDate',
-      end_date_field: 'endDate',
-      keyword_field: 'keywords',
-      grant_number: 'id',                 
-      project_base_url: 'https://cordis.europa.eu/project', 
-      min_acronym_length: 3,                 
-      default_limit: 10,                  
-      funder: {
-        name: "European Commission",
-        homepage: "https://ec.europa.eu"
-      }
-    }
-
-    # ANR Connector Configuration
-    @settings.anr_connector ||= {
-      base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets",
-      default_limit: 20,
-      min_acronym_length: 3,
-      source: 'ANR',
-      project_type: 'FundedProject',
-      query_format: "LIKE '*%s*'", 
-      search_fields: [:acronym, :grant_number, :name], 
-      description_fallbacks: {
-        'ods_france2030-projets' => ['action_nom_long', 'description'],
-        'aapg-projets' => ['objectifs', 'abstract'] 
-      },
-      funder: {
-        agentType: 'organization',
-        name: "Agence Nationale de la Recherche",
-        homepage: "https://anr.fr"
-      }
-    }
-
-    # ANR Connector Dataset Mappings
-    @settings.anr_dataset_mappings          ||= {
-      'ods_france2030-projets' => {
-        acronym: 'acronyme',
-        name: 'action_nom',
-        description: 'resume',
-        homepage: 'lien',
-        grant_number: 'eotp_projet',
-        start_date: 'date_debut_projet',
-        end_date: 'date_fin',
-        region: 'region_du_projet',
-        year: 'annee_de_contractualisation'
       },
-      'aapg-projets' => {
-        acronym: 'acronyme_projet',
-        name: 'intitule_complet_du_comite',
-        description: nil,
-        homepage: 'lien',
-        grant_number: 'code_projet_anr',
-        start_date: nil,
-        end_date: nil,
-        region: 'libelle_de_region_tutelle_hebergeante',
-        year: 'edition'
+      project_sources: ["ANR_FRANCE2030", "ANR_AAPG", "CORDIS"],
+      project_types: ["FundedProject", "NonFundedProject"],
+      configs: {
+        'CORDIS' => {
+          base_url: "https://cordis.europa.eu/project/id",
+          search_url: "https://cordis.europa.eu/search",
+          format: "xml",
+          source: 'CORDIS',
+          project_type: 'FundedProject',
+          coordinator_xpath: ".//organization[@type='coordinator']",
+          coordinator_name_element: 'legalName',
+          coordinator_url_element: 'address/url',
+          project_url_xpath: ".//webLink[@represents='project']/physUrl",
+          start_date_field: 'startDate',
+          end_date_field: 'endDate',
+          keyword_field: 'keywords',
+          grant_number: 'id',                 
+          project_base_url: 'https://cordis.europa.eu/project', 
+          min_acronym_length: 3,                 
+          default_limit: 10,                  
+          funder: {
+            name: "European Commission",
+            homepage: "https://ec.europa.eu"
+          }
+        },
+        'ANR_FRANCE2030' => {
+          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets",
+          dataset_id: "ods_france2030-projets",
+          default_limit: 20,
+          min_acronym_length: 3,
+          source: 'ANR',
+          project_type: 'FundedProject',
+          query_format: "LIKE '*%s*'", 
+          search_fields: [:acronym, :grant_number, :name],
+          description_fallbacks: ['action_nom_long', 'description'],
+          field_mappings: {
+            acronym: 'acronyme',
+            name: 'action_nom',
+            description: 'resume',
+            homepage: 'lien',
+            grant_number: 'eotp_projet',
+            start_date: 'date_debut_projet',
+            end_date: 'date_fin',
+            region: 'region_du_projet',
+            year: 'annee_de_contractualisation'
+          },
+          funder: {
+            agentType: 'organization',
+            name: "Agence Nationale de la Recherche",
+            homepage: "https://anr.fr"
+          }
+        },
+        'ANR_AAPG' => {
+          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets",
+          dataset_id: "aapg-projets",
+          default_limit: 20,
+          min_acronym_length: 3,
+          source: 'ANR',
+          project_type: 'FundedProject',
+          query_format: "LIKE '*%s*'", 
+          search_fields: [:acronym, :grant_number, :name],
+          description_fallbacks: ['objectifs', 'abstract'],
+          field_mappings: {
+            acronym: 'acronyme_projet',
+            name: 'intitule_complet_du_comite',
+            description: nil,
+            homepage: 'lien',
+            grant_number: 'code_projet_anr',
+            start_date: nil,
+            end_date: nil,
+            region: 'libelle_de_region_tutelle_hebergeante',
+            year: 'edition'
+          },
+          funder: {
+            agentType: 'organization',
+            name: "Agence Nationale de la Recherche",
+            homepage: "https://anr.fr"
+          }
+        }
       }
     }
 

From 6f082e7055a51707b87f326bd1f93ae84533ae1c Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Tue, 18 Mar 2025 13:24:38 +0100
Subject: [PATCH 28/66] change coordinator and institution to organization

---
 .../concerns/connectors/anr_connector.rb      |  5 ++--
 .../concerns/connectors/cordis_connector.rb   | 10 ++++----
 lib/ontologies_linked_data/config/config.rb   |  9 +++----
 lib/ontologies_linked_data/models/project.rb  | 25 ++++++-------------
 4 files changed, 19 insertions(+), 30 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index 2f9f5f15..99a59e11 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -124,10 +124,9 @@ def get_description(result, mapping)
       
       # Try fallbacks if primary is nil
       if description.nil?
-        fallbacks = connector_config[:description_fallbacks] || {}
-        dataset_fallbacks = fallbacks[params[:dataset_id]] || []
+        fallbacks = connector_config[:description_fallbacks] || []
         
-        dataset_fallbacks.each do |fallback_field|
+        fallbacks.each do |fallback_field|
           description = result[fallback_field]
           break if description
         end
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 5fad5f92..236cdbbe 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -79,11 +79,11 @@ def map_single_project(xml_project)
       
       coord_data = extract_coordinator(xml_project)
       if coord_data
-        coordinator = LinkedData::Models::Agent.new
-        coordinator.agentType = "organization"
-        coordinator.name = coord_data[:name]
-        coordinator.homepage = coord_data[:homepage]
-        project.coordinator = coordinator
+        organization = LinkedData::Models::Agent.new
+        organization.agentType = "organization"
+        organization.name = coord_data[:name]
+        organization.homepage = coord_data[:homepage]
+        project.organization = organization
       end
       
       funder_config = connector_config[:funder]
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index d85e420d..b8e0028c 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -112,8 +112,6 @@ def config(&block)
         'ANR_AAPG' => Connectors::AnrConnector,
         'CORDIS' => Connectors::CordisConnector
       },
-      project_sources: ["ANR_FRANCE2030", "ANR_AAPG", "CORDIS"],
-      project_types: ["FundedProject", "NonFundedProject"],
       configs: {
         'CORDIS' => {
           base_url: "https://cordis.europa.eu/project/id",
@@ -121,9 +119,9 @@ def config(&block)
           format: "xml",
           source: 'CORDIS',
           project_type: 'FundedProject',
-          coordinator_xpath: ".//organization[@type='coordinator']",
-          coordinator_name_element: 'legalName',
-          coordinator_url_element: 'address/url',
+          organization_xpath: ".//organization[@type='coordinator']",
+          organization_name_element: 'legalName',                    
+          organization_url_element: 'address/url',                 
           project_url_xpath: ".//webLink[@represents='project']/physUrl",
           start_date_field: 'startDate',
           end_date_field: 'endDate',
@@ -133,6 +131,7 @@ def config(&block)
           min_acronym_length: 3,                 
           default_limit: 10,                  
           funder: {
+            agentType: 'organization',  #
             name: "European Commission",
             homepage: "https://ec.europa.eu"
           }
diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index 04513705..eca17c88 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -4,11 +4,7 @@ class Project < LinkedData::Models::Base
       model :project, :name_with => :acronym
       
       def self.project_sources
-        LinkedData.settings.project_sources
-      end
-
-      def self.project_types
-        LinkedData.settings.project_types
+        LinkedData.settings.connectors[:available_sources].keys
       end
 
       # Required attributes
@@ -16,7 +12,7 @@ def self.project_types
       attribute :creator, enforce: [:existence, :user, :list]
       attribute :created, enforce: [:date_time], :default => lambda {|x| DateTime.now }
       attribute :updated, enforce: [:date_time], :default => lambda {|x| DateTime.now }
-      attribute :type, enforce: [:existence], enforcedValues: lambda { self.project_types }
+      attribute :type, enforce: [:existence], enforcedValues: %w[FundedProject NonFundedProject]
       attribute :name, enforce: [:existence]
       attribute :homePage, enforce: [:uri, :existence]
       attribute :description, enforce: [:existence]
@@ -26,29 +22,24 @@ def self.project_types
       # Optional attributes
       attribute :keywords, enforce: [:list]
       attribute :contact, enforce: [:Agent]
-      attribute :institution, enforce: [:Agent]
-      attribute :coordinator, enforce: [:Agent]
+      attribute :organization, enforce: [:Agent]
       attribute :logo, enforce: [:uri]
       
-      # Conditional attributes (required for ANR/CORDIS)
+      # Conditional attributes
       attribute :grant_number, enforce: [:string]
       attribute :start_date, enforce: [:date_time]
       attribute :end_date, enforce: [:date_time]
       attribute :funder, enforce: [:Agent]
       
 
-      embed :contact, :institution, :funder, :coordinator
-      serialize_default :acronym, :type, :name, :homepage, :description, 
+      embed :contact, :organization, :funder
+      serialize_default :acronym, :type, :name, :homePage, :description, 
                       :ontologyUsed, :created, :updated, :keywords,
-                      :contact, :institution, :grant_number, :start_date, 
-                      :end_date, :funder, :coordinator, :logo
+                      :contact, :organization, :grant_number, :start_date, 
+                      :end_date, :funder, :logo
 
       write_access :creator
       access_control_load :creator
-
-      def self.valid_project_type?(type)
-        self.project_types.include?(type)
-      end
     end
   end
 end
\ No newline at end of file

From 648a11049e64aa2bb2e55bf7cdcc4b4b77df0545 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 19 Mar 2025 23:57:36 +0100
Subject: [PATCH 29/66] some enhancements

---
 .gitignore                                    |  1 +
 .../concerns/connectors/anr_connector.rb      | 37 +++++++++----------
 .../concerns/connectors/base_connector.rb     |  7 +++-
 .../concerns/connectors/cordis_connector.rb   | 30 +++++++--------
 lib/ontologies_linked_data/config/config.rb   | 14 +------
 5 files changed, 40 insertions(+), 49 deletions(-)

diff --git a/.gitignore b/.gitignore
index 3bf90283..f966d595 100644
--- a/.gitignore
+++ b/.gitignore
@@ -36,3 +36,4 @@ create_permissions.log
 # solr configsets, these are generated with a script
 test/solr/configsets/term_search
 test/solr/configsets/property_search
+.qodo
diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index 99a59e11..09458962 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -5,39 +5,36 @@ class AnrConnector < BaseConnector
     private
     
     def build_url
-      dataset_id = connector_config[:dataset_id]
-      raise ConnectorError, "Dataset ID not configured" unless dataset_id
-      base_url = connector_config[:base_url]
-      "#{base_url}/#{dataset_id}/records"
+      connector_config[:base_url] || 
+        raise(ConnectorError, "BASE URL not configured")
     end
 
-    def build_params(params)
-      if !params[:id] && !params[:acronym]
+    def build_params(project_id = nil, project_acronym = nil)
+      if !project_id && !project_acronym
         raise ConnectorError, "Either project ID or acronym is required"
-      end
-      
+      end      
       {
-        limit: params[:limit] || connector_config[:default_limit],
-        where: build_query_conditions(params)
+        limit: 10,
+        where: build_query_conditions(project_id, project_acronym)
       }
     end
 
-    def build_query_conditions(params)
+    def build_query_conditions(project_id, project_acronym)
       mapping = get_dataset_mapping
       config = connector_config
       query_format = config[:query_format]
       
-      if params[:id]
+      if project_id
         # exact ID match
-        id = params[:id].to_s.strip
+        id = project_id.to_s.strip
         field_name = mapping[:grant_number]
         raise ConnectorError, "Grant number field not defined in mapping" unless field_name
         
         "#{field_name} = '#{id}'"
-      elsif params[:acronym]
+      elsif project_acronym
         # acronym search 
-        acronym_term = params[:acronym].to_s.strip
-        raise ConnectorError, "Acronym must be at least #{config[:min_acronym_length]} characters long" if acronym_term.length < config[:min_acronym_length]
+        acronym_term = project_acronym.to_s.strip
+        raise ConnectorError, "Acronym must be at least 3 characters long" if acronym_term.length < 3
         
         field_name = mapping[:acronym]
         raise ConnectorError, "Acronym field not defined in mapping" unless field_name
@@ -53,10 +50,10 @@ def get_dataset_mapping
     end
 
     def find_matching_project(results, mapping)
-      if params[:id]
-        results.find { |r| r[mapping[:grant_number]] == params[:id] }
-      elsif params[:acronym]
-        results.find { |r| r[mapping[:acronym]] == params[:acronym] }
+      if @params[:id]
+        results.find { |r| r[mapping[:grant_number]] == @params[:id] }
+      elsif @params[:acronym]
+        results.find { |r| r[mapping[:acronym]] == @params[:acronym] }
       end
     end
 
diff --git a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
index adeb4cbd..c7124b15 100644
--- a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
@@ -19,9 +19,12 @@ def connector_config
     end
 
     def fetch_projects(params)
-      @params = params
+      @params = params 
+      project_id = params[:id]
+      project_acronym = params[:acronym]
+      
       url = build_url
-      query_params = build_params(params)
+      query_params = build_params(project_id, project_acronym)
       response = fetch_data(url, query_params)
       map_response(response)
     end
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 236cdbbe..36448ad0 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -5,28 +5,28 @@ class CordisConnector < BaseConnector
     private
 
     def build_url
-      if params[:id]
+      if @params[:id]
         base_url = connector_config[:base_url] 
-        "#{base_url}/#{params[:id]}"
+        "#{base_url}/#{@params[:id]}"
       else
         connector_config[:search_url]
       end
     end
 
-    def build_params(params)
-      if params[:id]
-        { format: connector_config[:format] }
-      elsif params[:acronym]
-        acronym = params[:acronym].to_s.strip
-        min_acronym_length = connector_config[:min_acronym_length] 
-        raise ConnectorError, "Acronym must be at least #{min_acronym_length} characters long" if acronym.length < min_acronym_length
+    def build_params(project_id = nil, project_acronym = nil)
+      if project_id
+        { format: 'xml' }
+      elsif project_acronym
+        acronym = project_acronym.to_s.strip
+        raise ConnectorError, "Acronym must be at least 3 characters long" if acronym.length < 3
+        
         query = "contenttype='project'"
         query += " AND (acronym='#{acronym}*' OR acronym='* #{acronym}*' OR acronym='*-#{acronym}*' OR acronym='*_#{acronym}*')"
         {
           q: query,
-          p: params[:page] || 1,
-          num: params[:limit] || connector_config[:default_limit],
-          format: connector_config[:format]
+          p: 1,
+          num: 10,
+          format: 'xml'
         }
       else
         raise ConnectorError, "Either project ID or acronym is required"
@@ -104,7 +104,7 @@ def map_response(xml_data)
       begin
         doc = REXML::Document.new(xml_data)
         
-        if doc.elements['project'] && params[:id]
+        if doc.elements['project'] && @params[:id]
           project = map_single_project(doc.elements['project'])
           return {
             count: 1,
@@ -119,7 +119,7 @@ def map_response(xml_data)
           end
           
           if projects.empty?
-            raise ConnectorError, "No projects found matching acronym: #{params[:acronym]}"
+            raise ConnectorError, "No projects found matching acronym: #{@params[:acronym]}"
           end
           return {
             count: projects.length, 
@@ -135,7 +135,7 @@ def map_response(xml_data)
     end
 
     def build_default_homepage(xml_project)
-      base_url = connector_config[:project_base_url]
+      base_url = connector_config[:base_url]
       grant_number = connector_config[:grant_number]
       project_id = xml_project.elements[grant_number]&.text
       
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index b8e0028c..25072fae 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -116,7 +116,6 @@ def config(&block)
         'CORDIS' => {
           base_url: "https://cordis.europa.eu/project/id",
           search_url: "https://cordis.europa.eu/search",
-          format: "xml",
           source: 'CORDIS',
           project_type: 'FundedProject',
           organization_xpath: ".//organization[@type='coordinator']",
@@ -127,9 +126,6 @@ def config(&block)
           end_date_field: 'endDate',
           keyword_field: 'keywords',
           grant_number: 'id',                 
-          project_base_url: 'https://cordis.europa.eu/project', 
-          min_acronym_length: 3,                 
-          default_limit: 10,                  
           funder: {
             agentType: 'organization',  #
             name: "European Commission",
@@ -137,10 +133,7 @@ def config(&block)
           }
         },
         'ANR_FRANCE2030' => {
-          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets",
-          dataset_id: "ods_france2030-projets",
-          default_limit: 20,
-          min_acronym_length: 3,
+          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/ods_france2030-projets/records",
           source: 'ANR',
           project_type: 'FundedProject',
           query_format: "LIKE '*%s*'", 
@@ -164,10 +157,7 @@ def config(&block)
           }
         },
         'ANR_AAPG' => {
-          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets",
-          dataset_id: "aapg-projets",
-          default_limit: 20,
-          min_acronym_length: 3,
+          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/aapg-projets/records",
           source: 'ANR',
           project_type: 'FundedProject',
           query_format: "LIKE '*%s*'", 

From ae14ab4df04c28395d94d2762e90ea8075e8eef3 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 26 Mar 2025 14:42:08 +0100
Subject: [PATCH 30/66] Update project model test

---
 test/models/test_project.rb | 123 +++++++++++++++++++++++++++---------
 1 file changed, 92 insertions(+), 31 deletions(-)

diff --git a/test/models/test_project.rb b/test/models/test_project.rb
index 1081732e..590b581e 100644
--- a/test/models/test_project.rb
+++ b/test/models/test_project.rb
@@ -22,7 +22,6 @@ def setup
       :acronym => "GP",
       :creator => [@user],
       :created => DateTime.now,
-      :institution => "A university.",
       :contacts => "Anonymous Funk, Anonymous Miller.",
       :homePage => RDF::IRI.new("http://valid.uri.com"),
       :description => "This is a test project",
@@ -43,23 +42,13 @@ def teardown
   def test_project_acronym
     p = LinkedData::Models::Project.new
     assert (not p.valid?)
-    # name should be a valid URI, this should be:
     p.acronym = @project_params[:acronym]
     assert (not p.valid?) # Other attributes generate errors
     assert_equal(true, p.errors[:acronym].nil?)
   end
 
-  def test_project_contacts
-    p = LinkedData::Models::Project.new
-    assert (not p.valid?)
-    # This should be a string.
-    p.contacts = @project_params[:contacts]
-    assert (not p.valid?) # Other attributes generate errors
-    assert_equal(true, p.errors[:contacts].nil?)
-  end
-
   def test_project_created
-    # Ensure there is no 'created' parameter so the model creates a default value.
+    # Ensure there is no 'created' parameter so the model creates a default value
     @project_params.delete :created
     model_created_test(LinkedData::Models::Project.new(@project_params)) # method from test_case.rb
   end
@@ -80,6 +69,9 @@ def test_project_creator_multiple
     p.description = @project_params[:description]
     p.creator = @project_params[:creator]
     p.homePage = @project_params[:homePage]
+    p.type = @project_params[:type]
+    p.source = @project_params[:source]
+    p.ontologyUsed = @project_params[:ontologyUsed]
     assert p.valid?, p.errors
 
     # Creator attribute not a list.
@@ -112,7 +104,6 @@ def test_project_creator_multiple
   def test_project_description
     p = LinkedData::Models::Project.new
     assert (not p.valid?)
-    # This should be a string.
     p.description = @project_params[:description]
     assert (not p.valid?) # Other attributes generate errors
     assert_equal(true, p.errors[:description].nil?)
@@ -131,15 +122,6 @@ def test_project_homePage
     assert_equal(true, p.errors[:homePage].nil?)
   end
 
-  def test_project_institution
-    p = LinkedData::Models::Project.new
-    assert (not p.valid?)
-    # This should be a string.
-    p.institution = @project_params[:institution]
-    assert (not p.valid?) # Other attributes generate errors
-    assert_equal(true, p.errors[:institution].nil?)
-  end
-
   def test_project_name
     p = LinkedData::Models::Project.new
     assert (not p.valid?)
@@ -165,34 +147,113 @@ def test_project_ontologyUsed
     assert_equal(true, p.errors[:ontologyUsed].nil?)
   end
 
+  def test_project_type
+    p = LinkedData::Models::Project.new
+    assert (not p.valid?)
+    # Invalid type
+    p.type = "InvalidType"
+    assert (not p.valid?)
+    assert_equal(false, p.errors[:type].nil?)
+    # Valid type
+    p.type = "FundedProject"
+    assert (not p.valid?) # Other attributes generate errors
+    assert_equal(true, p.errors[:type].nil?)
+  end
+
+  def test_project_source
+    p = LinkedData::Models::Project.new
+    assert (not p.valid?)
+    # Invalid source
+    p.source = "INVALID_SOURCE"
+    assert (not p.valid?)
+    assert_equal(false, p.errors[:source].nil?)
+    # Valid source
+    p.source = LinkedData::Models::Project.project_sources.first
+    assert (not p.valid?) # Other attributes generate errors
+    assert_equal(true, p.errors[:source].nil?)
+  end
+
   def test_valid_project
     # The setup project parameters should be valid
     p = LinkedData::Models::Project.new(@project_params)
     assert_equal(true, p.valid?, "Invalid project parameters: #{p.errors}")
-    # Incrementally evaluate project validity...
+    
+    # Incrementally evaluate project validity
     p = LinkedData::Models::Project.new
     assert (not p.valid?)
-    # Not valid because not all attributes are present...
+    
+    # Add required attributes
     p.name = @project_params[:name]
     p.acronym = @project_params[:acronym]
-    p.created = @project_params[:created]
     p.homePage = @project_params[:homePage]
     p.description = @project_params[:description]
-    p.institution = @project_params[:institution]
+    p.type = @project_params[:type]
+    p.source = @project_params[:source]
     assert (not p.valid?)
-    # Still not valid because not all attributes are typed properly...
+    
+    # Invalid creator and ontologyUsed types
     p.creator = "test_user" # must be LinkedData::Model::User
     assert (not p.valid?)
     p.ontologyUsed = "TEST_ONT" # must be array of LinkedData::Model::Ontology
     assert (not p.valid?)
-    # Complete valid project...
+    
+    # Complete valid project
     p.creator = @project_params[:creator]
     p.ontologyUsed = @project_params[:ontologyUsed]
-    assert p.valid?
+    assert p.valid?, p.errors
+  end
+
+  def test_optional_attributes
+    p = LinkedData::Models::Project.new(@project_params)
+    assert p.valid?, p.errors
+    
+    # Test optional attributes
+    p.keywords = ["keyword1", "keyword2"]
+    assert p.valid?, p.errors
+    
+    # Test date attributes
+    p.start_date = DateTime.now - 30
+    p.end_date = DateTime.now + 30
+    assert p.valid?, p.errors
+    
+    # Test grant number
+    p.grant_number = "GRANT-123"
+    assert p.valid?, p.errors
+    
+    # Test adding logo
+    p.logo = RDF::IRI.new("http://example.org/logo.png")
+    assert p.valid?, p.errors
+  end
+
+  def test_agent_attributes
+    p = LinkedData::Models::Project.new(@project_params)
+    assert p.valid?, p.errors
+    
+    # Create contact agent
+    contact = LinkedData::Models::Agent.new
+    contact.agentType = "person"
+    contact.name = "John Doe"
+    contact.email = "john@example.org"
+    p.contact = contact
+    
+    # Create organization agent
+    org = LinkedData::Models::Agent.new
+    org.agentType = "organization"
+    org.name = "Example University"
+    org.homepage = "http://university.example.org"
+    p.organization = org
+    
+    # Create funder agent
+    funder = LinkedData::Models::Agent.new
+    funder.agentType = "organization"
+    funder.name = "Funding Agency"
+    funder.homepage = "http://funder.example.org"
+    p.funder = funder
+    
+    assert p.valid?, p.errors
   end
 
   def test_project_lifecycle
     model_lifecycle_test(LinkedData::Models::Project.new(@project_params))
   end
-
-end
+end
\ No newline at end of file

From a3692de0d091e5ed6f9a048e409d2c5760e6947f Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 26 Mar 2025 14:47:12 +0100
Subject: [PATCH 31/66] Add 404 error

---
 .../concerns/connectors/anr_connector.rb      |  2 +-
 .../concerns/connectors/base_connector.rb     |  2 +-
 .../concerns/connectors/cordis_connector.rb   | 24 ++++++++++++++++---
 3 files changed, 23 insertions(+), 5 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index 09458962..99d908c1 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -104,7 +104,7 @@ def build_project_data(result, mapping)
     end
 
     def map_response(data)
-      raise ConnectorError, "No projects found matching search criteria" if data['results'].empty?
+      raise ProjectNotFoundError, "No projects found matching search criteria" if data['results'].empty?
       
       mapping = get_dataset_mapping
       projects = data['results'].map { |result| build_project_data(result, mapping) }
diff --git a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
index c7124b15..ca09bb96 100644
--- a/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/base_connector.rb
@@ -3,7 +3,7 @@
 
 module Connectors
   class ConnectorError < StandardError; end
-
+  class ProjectNotFoundError < ConnectorError; end 
   class BaseConnector
     attr_reader :params
     attr_accessor :connector_key
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 36448ad0..9d01cc24 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -105,28 +105,46 @@ def map_response(xml_data)
         doc = REXML::Document.new(xml_data)
         
         if doc.elements['project'] && @params[:id]
-          project = map_single_project(doc.elements['project'])
+          project_element = doc.elements['project']
+          
+          if !project_element || !project_element.elements[connector_config[:grant_number]]&.text
+            raise ProjectNotFoundError, "No projects found matching search criteria"
+          end
+          
+          project = map_single_project(project_element)
           return {
             count: 1,
             projects: [project]
           }
         elsif doc.elements['response']
           total_hits = doc.elements['response/result/header/totalHits']&.text.to_i
+          
+          if total_hits == 0
+            raise ProjectNotFoundError, "No projects found matching search criteria"
+          end
+          
           projects = []
           
           REXML::XPath.each(doc, '//hit/project') do |project_xml|
             projects << map_single_project(project_xml)
           end
           
+          
           if projects.empty?
-            raise ConnectorError, "No projects found matching acronym: #{@params[:acronym]}"
+            raise ProjectNotFoundError, "No projects found matching search criteria"
           end
+          
           return {
             count: projects.length, 
             projects: projects
           }
         else
-          raise ConnectorError, "Invalid XML response format"
+          error_element = doc.elements['error'] || doc.elements['//error']
+          if error_element&.text&.include?("not found")
+            raise ProjectNotFoundError, "No projects found matching search criteria"
+          else
+            raise ConnectorError, "Invalid XML response format"
+          end
         end
         
       rescue REXML::ParseException => e

From 905f76ea31eff1d6dacb10a97dffde3b89a00e21 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Tue, 8 Apr 2025 23:27:58 +0200
Subject: [PATCH 32/66] Feature: add mod-api SemanticArtefactCatalogRecord
 model (#202)

* add record model

* add attributes to record model

* add additional attributes and make default attributes

* fix record context in catalog

* address request changes
---
 .../semantic_artefact/attribute_fetcher.rb    | 13 +++
 .../models/mod/semantic_artefact.rb           |  3 +-
 .../models/mod/semantic_artefact_catalog.rb   |  2 +-
 .../mod/semantic_artefact_catalog_record.rb   | 97 +++++++++++++++++++
 4 files changed, 113 insertions(+), 2 deletions(-)
 create mode 100644 lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb

diff --git a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
index 0a6d18c4..1198b565 100644
--- a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
+++ b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
@@ -13,12 +13,25 @@ def bring(*attributes)
                         hash[model][attr] = mapped_attr
                     end
 
+                    populate_from_self(grouped_attributes[self.class]) if grouped_attributes[self.class].any?
                     fetch_from_ontology(grouped_attributes[:ontology]) if grouped_attributes[:ontology].any?
                     fetch_from_submission(grouped_attributes[:ontology_submission]) if grouped_attributes[:ontology_submission].any?
                     fetch_from_metrics(grouped_attributes[:metric]) if grouped_attributes[:metric].any?
                 end
             
                 private
+
+                def populate_from_self(attributes)
+                    attributes.each_key do |attr|
+                      if self.class.handler?(attr)
+                        send(attr)
+                      else
+                        value = self.class.default(attr)
+                        value = value.call(self) if value.is_a?(Proc)
+                        send("#{attr}=", value || (respond_to?(attr) ? send(attr) : nil))
+                      end
+                    end
+                end
             
                 def fetch_from_ontology(attributes)
                     return if attributes.empty?
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index d0df179d..f75b5600 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -1,4 +1,5 @@
 require 'ontologies_linked_data/models/mod/semantic_artefact_distribution'
+require 'ontologies_linked_data/models/mod/semantic_artefact_catalog_record'
 require 'ontologies_linked_data/models/skos/scheme'
 require 'ontologies_linked_data/models/skos/collection'
 require 'ontologies_linked_data/models/skos/skosxl'
@@ -119,7 +120,7 @@ class SemanticArtefact < LinkedData::Models::Base
             
             links_load :acronym
             link_to LinkedData::Hypermedia::Link.new("distributions", lambda {|s| "artefacts/#{s.acronym}/distributions"}, LinkedData::Models::SemanticArtefactDistribution.type_uri),
-                    LinkedData::Hypermedia::Link.new("record", lambda {|s| "artefacts/#{s.acronym}/record"}),
+                    LinkedData::Hypermedia::Link.new("record", lambda {|s| "artefacts/#{s.acronym}/record"}, LinkedData::Models::SemanticArtefactCatalogRecord.type_uri),
                     LinkedData::Hypermedia::Link.new("resources", lambda {|s| "artefacts/#{s.acronym}/resources"}),
                     LinkedData::Hypermedia::Link.new("single_resource", lambda {|s| "artefacts/#{s.acronym}/resources/{:resourceID}"}),
                     LinkedData::Hypermedia::Link.new("classes", lambda {|s| "artefacts/#{s.acronym}/classes"}, LinkedData::Models::Class.uri_type),
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index a6331fca..47837e2b 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -148,7 +148,7 @@ class SemanticArtefactCatalog < LinkedData::Models::Base
                     LinkedData::Hypermedia::Link.new("submissions", lambda {|s| "submissions"}, LinkedData::Models::OntologySubmission.type_uri),
                     LinkedData::Hypermedia::Link.new("submission_metadata", lambda {|s| "submission_metadata"}, nil),
                     LinkedData::Hypermedia::Link.new("artefacts", lambda {|s| "artefacts"}, LinkedData::Models::SemanticArtefact.type_uri),
-                    LinkedData::Hypermedia::Link.new("records", lambda {|s| "records"}, nil),
+                    LinkedData::Hypermedia::Link.new("records", lambda {|s| "records"}, LinkedData::Models::SemanticArtefactCatalogRecord.type_uri),
                     LinkedData::Hypermedia::Link.new("users", lambda {|s| "users"}, LinkedData::Models::User.type_uri),
                     LinkedData::Hypermedia::Link.new("agents", lambda {|s| "agents"}, LinkedData::Models::Agent.type_uri),
                     LinkedData::Hypermedia::Link.new("groups", lambda {|s| "groups"}, LinkedData::Models::Group.type_uri),
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb
new file mode 100644
index 00000000..114059b4
--- /dev/null
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb
@@ -0,0 +1,97 @@
+module LinkedData
+  module Models
+    class SemanticArtefactCatalogRecord < LinkedData::Models::Base
+      include LinkedData::Concerns::SemanticArtefact::AttributeMapping
+      include LinkedData::Concerns::SemanticArtefact::AttributeFetcher
+
+      model :SemanticArtefactCatalogRecord, namespace: :mod, name_with: ->(r) { record_id_generator(r) }
+
+      # mod specs attributes
+      attribute_mapped :acronym, namespace: :omv, mapped_to: { model: :ontology }
+      attribute_mapped :relatedArtefactId, mapped_to: { model: self }, default: ->(r) {  RDF::URI("#{(Goo.id_prefix)}artefacts/#{CGI.escape(r.ontology.acronym.to_s)}") }
+      attribute_mapped :homepage, namespace: :foaf, mapped_to: { model: self },  default: ->(r) { RDF::URI("http://#{LinkedData.settings.ui_host}/#{r.ontology.acronym}") } #handler: :record_home_page
+      attribute_mapped :created, namespace: :dcterms, mapped_to: { model: self }, handler: :get_creation_date
+      attribute_mapped :modified, namespace: :dcterms, mapped_to: { model: self }, handler: :get_modification_date
+      attribute_mapped :curatedOn, namespace: :pav, mapped_to: { model: :ontology_submission }
+      attribute_mapped :curatedBy, namespace: :pav, mapped_to: { model: :ontology_submission }
+
+      # additional attributes
+      attribute_mapped :viewingRestriction, mapped_to: { model: :ontology }
+      attribute_mapped :administeredBy, mapped_to: { model: :ontology }
+      attribute_mapped :doNotUpdate, mapped_to: { model: :ontology }
+      attribute_mapped :flat, mapped_to: { model: :ontology }
+      attribute_mapped :summaryOnly, mapped_to: { model: :ontology }
+      attribute_mapped :acl, mapped_to: { model: :ontology }
+      attribute_mapped :ontologyType, mapped_to: { model: :ontology }
+      attribute_mapped :classType, mapped_to: { model: :ontology_submission }
+      attribute_mapped :missingImports, mapped_to: { model: :ontology_submission }
+      attribute_mapped :submissionStatus, mapped_to: { model: :ontology_submission }
+      attribute_mapped :pullLocation, mapped_to: { model: :ontology_submission }
+      attribute_mapped :dataDump, namespace: :void, mapped_to: { model: :ontology_submission }
+      attribute_mapped :csvDump, mapped_to: { model: :ontology_submission }
+      attribute_mapped :uploadFilePath, mapped_to: { model: :ontology_submission }
+      attribute_mapped :diffFilePath, mapped_to: { model: :ontology_submission }
+      attribute_mapped :masterFileName, mapped_to: { model: :ontology_submission }
+
+
+      attribute :ontology, type: :ontology, enforce: [:existence]
+      attribute :submission, type: :ontology_submission
+
+      # Access control
+      read_restriction_based_on ->(record) { record.ontology }
+
+      serialize_default :acronym, :relatedArtefactId, :homepage, :created, :modified, :curatedOn, :curatedBy
+      serialize_never :ontology, :submission
+
+      def self.record_id_generator(record)
+        record.ontology.bring(:acronym) if record.ontology.bring?(:acronym)
+        raise ArgumentError, "Acronym is nil for ontology  #{record.ontology.id} to generate id" if record.ontology.acronym.nil?
+        return RDF::URI.new(
+          "#{(Goo.id_prefix)}records/#{CGI.escape(record.ontology.acronym.to_s)}"
+        )
+      end
+
+      ##
+      ## find an artefact (ontology) and map it to record
+      def self.find(artefact_id)
+        ont = Ontology.find(artefact_id).include(:acronym, :viewingRestriction, :administeredBy, :acl).first
+        return nil unless ont
+        new.tap do |sacr|
+          sacr.ontology = ont
+        end
+      end
+      
+      def self.all(attributes, page, pagesize)
+        all_count = Ontology.where.count
+        onts = Ontology.where.include(:acronym, :viewingRestriction, :administeredBy, :acl).page(page, pagesize).page_count_set(all_count).all
+        all_records = onts.map do |o|
+          new.tap do |sacr|
+            sacr.ontology = o
+            sacr.bring(*attributes) if attributes
+          end
+        end
+        Goo::Base::Page.new(page, pagesize, all_count, all_records)
+      end
+      
+      private
+      def get_modification_date
+        fetch_submission_date(:max_by)
+      end
+      
+      def get_creation_date
+        fetch_submission_date(:min_by)
+      end
+      
+      def fetch_submission_date(method)
+        @ontology.bring(submissions: [:submissionId, :creationDate]) if @ontology.bring?(:submissions)
+        submission = @ontology.submissions.public_send(method, &:submissionId)
+        return unless submission
+      
+        submission.bring(:creationDate) unless submission.bring?(:creationDate)
+        submission.creationDate
+      end
+
+
+    end
+  end
+end

From 71ad79b57ab4c5963d6948ae4651de31cce01d42 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 9 Apr 2025 15:01:43 +0200
Subject: [PATCH 33/66] modifying response to match ontoportal responses

---
 .../concerns/connectors/anr_connector.rb               |  4 ++--
 .../concerns/connectors/cordis_connector.rb            | 10 ++++++----
 2 files changed, 8 insertions(+), 6 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index 99d908c1..4a715eac 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -110,8 +110,8 @@ def map_response(data)
       projects = data['results'].map { |result| build_project_data(result, mapping) }
       
       {
-        count: projects.length,
-        projects: projects
+        totalCount: projects.length,
+        collection: projects
       }
     end
 
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 9d01cc24..115ae296 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -22,6 +22,8 @@ def build_params(project_id = nil, project_acronym = nil)
         
         query = "contenttype='project'"
         query += " AND (acronym='#{acronym}*' OR acronym='* #{acronym}*' OR acronym='*-#{acronym}*' OR acronym='*_#{acronym}*')"
+        # query += " AND (acronym='#{acronym}*')"
+
         {
           q: query,
           p: 1,
@@ -113,8 +115,8 @@ def map_response(xml_data)
           
           project = map_single_project(project_element)
           return {
-            count: 1,
-            projects: [project]
+            totalCount: 1,
+            collection: [project]
           }
         elsif doc.elements['response']
           total_hits = doc.elements['response/result/header/totalHits']&.text.to_i
@@ -135,8 +137,8 @@ def map_response(xml_data)
           end
           
           return {
-            count: projects.length, 
-            projects: projects
+            totalCount: projects.length, 
+            collection: projects
           }
         else
           error_element = doc.elements['error'] || doc.elements['//error']

From 7daac0b0be57f19ecc02480e05e14d4d79e9e200 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 9 Apr 2025 15:02:39 +0200
Subject: [PATCH 34/66] matching @context schema of project model

---
 lib/ontologies_linked_data/models/project.rb | 76 ++++++++++++++------
 1 file changed, 54 insertions(+), 22 deletions(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index eca17c88..39bde7c3 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -1,42 +1,74 @@
 module LinkedData
   module Models
     class Project < LinkedData::Models::Base
-      model :project, :name_with => :acronym
+      model :project, :name_with => :acronym,
+            rdf_type: lambda { |*x| 'https://schema.org/ResearchProject' }
       
       def self.project_sources
         LinkedData.settings.connectors[:available_sources].keys
       end
 
       # Required attributes
-      attribute :acronym, enforce: [:unique, :existence]
-      attribute :creator, enforce: [:existence, :user, :list]
-      attribute :created, enforce: [:date_time], :default => lambda {|x| DateTime.now }
-      attribute :updated, enforce: [:date_time], :default => lambda {|x| DateTime.now }
-      attribute :type, enforce: [:existence], enforcedValues: %w[FundedProject NonFundedProject]
-      attribute :name, enforce: [:existence]
-      attribute :homePage, enforce: [:uri, :existence]
-      attribute :description, enforce: [:existence]
-      attribute :ontologyUsed, enforce: [:ontology, :list, :existence]
-      attribute :source, enforce: [:existence], enforcedValues: lambda { self.project_sources }
+      attribute :acronym, enforce: [:unique, :existence], 
+                namespace: :metadata, property: :acronym
+                
+      attribute :creator, enforce: [:existence, :user, :list], 
+                namespace: :schema, property: :creator
+                
+      attribute :created, enforce: [:date_time], :default => lambda {|x| DateTime.now },
+                namespace: :schema, property: :dateCreated
+                
+      attribute :updated, enforce: [:date_time], :default => lambda {|x| DateTime.now },
+                namespace: :schema, property: :dateModified
+                
+      attribute :type, enforce: [:existence], enforcedValues: %w[FundedProject NonFundedProject],
+                namespace: :metadata, property: :projectType
+                
+      attribute :name, enforce: [:existence],
+                namespace: :schema, property: :legalName
+                
+      attribute :homePage, enforce: [:uri, :existence],
+                namespace: :foaf, property: :homepage
+                
+      attribute :description, enforce: [:existence],
+                namespace: :schema, property: :description
+                
+      attribute :ontologyUsed, enforce: [:ontology, :list, :existence],
+                namespace: :metadata, property: :ontologyUsed
+                
+      attribute :source, enforce: [:existence], enforcedValues: lambda { self.project_sources },
+                namespace: :schema, property: :isBasedOn
       
       # Optional attributes
-      attribute :keywords, enforce: [:list]
-      attribute :contact, enforce: [:Agent]
-      attribute :organization, enforce: [:Agent]
-      attribute :logo, enforce: [:uri]
-      
-      # Conditional attributes
-      attribute :grant_number, enforce: [:string]
-      attribute :start_date, enforce: [:date_time]
-      attribute :end_date, enforce: [:date_time]
-      attribute :funder, enforce: [:Agent]
+      attribute :keywords, enforce: [:list],
+                namespace: :schema, property: :keywords
+                
+      attribute :contact, enforce: [:Agent],
+                namespace: :schema, property: :contactPoint
+                
+      attribute :organization, enforce: [:Agent],
+                namespace: :org, property: :memberOf
+                
+      attribute :logo, enforce: [:uri],
+                namespace: :schema, property: :logo
       
+      attribute :grant_number, enforce: [:string],
+                namespace: :schema, property: :identifier
+                
+      attribute :start_date, enforce: [:date_time],
+                namespace: :schema, property: :startDate
+                
+      attribute :end_date, enforce: [:date_time],
+                namespace: :schema, property: :endDate
+                
+      attribute :funder, enforce: [:Agent],
+                namespace: :schema, property: :funder
 
       embed :contact, :organization, :funder
       serialize_default :acronym, :type, :name, :homePage, :description, 
                       :ontologyUsed, :created, :updated, :keywords,
                       :contact, :organization, :grant_number, :start_date, 
-                      :end_date, :funder, :logo
+                      :end_date, :funder, :logo, :source
 
       write_access :creator
       access_control_load :creator

From 15f46b9e3665ea01a0f2d9b46f38b27720201d66 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Thu, 10 Apr 2025 21:53:25 +0200
Subject: [PATCH 35/66] fix the project type error

---
 lib/ontologies_linked_data/models/project.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index 39bde7c3..f8ec0e8b 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -2,7 +2,7 @@ module LinkedData
   module Models
     class Project < LinkedData::Models::Base
       model :project, :name_with => :acronym,
-            rdf_type: lambda { |*x| 'https://schema.org/ResearchProject' }
+            rdf_type: lambda { |*x| RDF::URI.new('https://schema.org/ResearchProject') }
       
       def self.project_sources
         LinkedData.settings.connectors[:available_sources].keys

From 068c0b8c64160e5dcf807d470240b4fd9294c9c8 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Tue, 22 Apr 2025 17:58:57 +0200
Subject: [PATCH 36/66] Feature: add hydra pagination to mod models (#204)

* add hydra pagination

* add ModBase class and links in serialization

* fix collection id

* fix generation context for tests

* inherit catalogRecord model from ModBase

* address request changes

* fix tests
---
 .../models/mod/hydra_page.rb                  |  59 ++++++++++
 .../models/mod/mod_base.rb                    |   6 +
 .../models/mod/semantic_artefact.rb           |  24 ++--
 .../models/mod/semantic_artefact_catalog.rb   |   2 +-
 .../mod/semantic_artefact_catalog_record.rb   |   4 +-
 .../mod/semantic_artefact_distribution.rb     |   2 +-
 .../monkeypatches/object.rb                   |   2 +
 .../serializers/json.rb                       | 105 +++++++++++++-----
 test/models/mod/test_artefact.rb              |  40 ++++---
 9 files changed, 184 insertions(+), 60 deletions(-)
 create mode 100644 lib/ontologies_linked_data/models/mod/hydra_page.rb
 create mode 100644 lib/ontologies_linked_data/models/mod/mod_base.rb

diff --git a/lib/ontologies_linked_data/models/mod/hydra_page.rb b/lib/ontologies_linked_data/models/mod/hydra_page.rb
new file mode 100644
index 00000000..877b4c9d
--- /dev/null
+++ b/lib/ontologies_linked_data/models/mod/hydra_page.rb
@@ -0,0 +1,59 @@
+module LinkedData
+  module Models
+    class HydraPage < Goo::Base::Page
+
+      def convert_hydra_page(options, &block)
+        {
+          '@id': get_request_path(options),
+          '@type': 'hydra:Collection',
+          totalItems: self.aggregate,
+          itemsPerPage: self.size,
+          view: generate_hydra_page_view(options, self.page_number, self.total_pages),
+          member: map { |item| item.to_flex_hash(options, &block) }
+        }
+      end
+      
+      def self.generate_hydra_context
+        {
+          'hydra': 'http://www.w3.org/ns/hydra/core#',
+          'Collection': 'hydra:Collection',
+          'member': 'hydra:member',
+          'totalItems': 'hydra:totalItems',
+          'itemsPerPage': 'hydra:itemsPerPage',
+          'view': 'hydra:view',
+          'firstPage': 'hydra:first',
+          'lastPage': 'hydra:last',
+          'previousPage': 'hydra:previous',
+          'nextPage': 'hydra:next',
+        }
+      end
+      
+      private
+
+      def generate_hydra_page_view(options, page, page_count)
+        request_path = get_request_path(options)
+        params = options[:request] ? options[:request].params.dup : {}
+
+        build_url = ->(page_number) {
+          query = Rack::Utils.build_nested_query(params.merge("page" => page_number.to_s))
+          request_path ? "#{request_path}?#{query}" : "?#{query}"
+        }
+
+        {
+          "@id": build_url.call(page),
+          "@type": "hydra:PartialCollectionView",
+          firstPage: build_url.call(1),
+          previousPage: page > 1 ? build_url.call(page - 1) : nil,
+          nextPage: page < page_count ? build_url.call(page + 1) : nil,
+          lastPage: page_count != 0 ? build_url.call(page_count) : build_url.call(1)
+        }
+      end
+      
+      def get_request_path(options)
+        request_path = options[:request] ? "#{LinkedData.settings.rest_url_prefix.chomp("/")}#{options[:request].path}" : nil
+        request_path
+      end
+
+    end
+  end
+end
diff --git a/lib/ontologies_linked_data/models/mod/mod_base.rb b/lib/ontologies_linked_data/models/mod/mod_base.rb
new file mode 100644
index 00000000..e1962058
--- /dev/null
+++ b/lib/ontologies_linked_data/models/mod/mod_base.rb
@@ -0,0 +1,6 @@
+module LinkedData
+  module Models
+    class ModBase < LinkedData::Models::Base      
+    end
+  end
+end
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index f75b5600..62ee88f7 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -8,7 +8,7 @@
 module LinkedData
     module Models
 
-        class SemanticArtefact < LinkedData::Models::Base
+        class SemanticArtefact < LinkedData::Models::ModBase
             include LinkedData::Concerns::SemanticArtefact::AttributeMapping
             include LinkedData::Concerns::SemanticArtefact::AttributeFetcher
 
@@ -122,7 +122,6 @@ class SemanticArtefact < LinkedData::Models::Base
             link_to LinkedData::Hypermedia::Link.new("distributions", lambda {|s| "artefacts/#{s.acronym}/distributions"}, LinkedData::Models::SemanticArtefactDistribution.type_uri),
                     LinkedData::Hypermedia::Link.new("record", lambda {|s| "artefacts/#{s.acronym}/record"}, LinkedData::Models::SemanticArtefactCatalogRecord.type_uri),
                     LinkedData::Hypermedia::Link.new("resources", lambda {|s| "artefacts/#{s.acronym}/resources"}),
-                    LinkedData::Hypermedia::Link.new("single_resource", lambda {|s| "artefacts/#{s.acronym}/resources/{:resourceID}"}),
                     LinkedData::Hypermedia::Link.new("classes", lambda {|s| "artefacts/#{s.acronym}/classes"}, LinkedData::Models::Class.uri_type),
                     LinkedData::Hypermedia::Link.new("concepts", lambda {|s| "artefacts/#{s.acronym}/concepts"}, LinkedData::Models::Class.uri_type),
                     LinkedData::Hypermedia::Link.new("properties", lambda {|s| "artefacts/#{s.acronym}/properties"}, "#{Goo.namespaces[:metadata].to_s}Property"),
@@ -168,7 +167,7 @@ def self.all_artefacts(attributes, page, pagesize)
                         sa.bring(*attributes) if attributes
                     end
                 end
-                Goo::Base::Page.new(page, pagesize, all_count, all_artefacts)
+                LinkedData::Models::HydraPage.new(page, pagesize, all_count, all_artefacts)
             end
 
             def latest_distribution(status)
@@ -181,15 +180,22 @@ def distribution(dist_id)
                 SemanticArtefactDistribution.new(sub) unless sub.nil?
             end
         
-            def all_distributions(options = {})
-                to_bring = options[:includes]
-                @ontology.bring(:submissions)
-        
-                @ontology.submissions.map do |submission|
+            def all_distributions(attributes, page, pagesize)
+                filter_by_acronym = Goo::Filter.new(ontology: [:acronym]) == @ontology.acronym
+                submissions_count =  OntologySubmission.where.filter(filter_by_acronym).count
+                submissions_page = OntologySubmission.where.include(:distributionId)
+                                                    .filter(filter_by_acronym)
+                                                    .order_by(distributionId: :desc)
+                                                    .page(page, pagesize)
+                                                    .page_count_set(submissions_count)
+                                                    .all
+
+                all_distributions = submissions_page.map do |submission|
                     SemanticArtefactDistribution.new(submission).tap do |dist|
-                        dist.bring(*to_bring) if to_bring
+                        dist.bring(*attributes) if attributes
                     end
                 end
+                LinkedData::Models::HydraPage.new(page, pagesize, submissions_count, all_distributions)
             end
     
             def analytics
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index 47837e2b..6d91ae2b 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -16,7 +16,7 @@
 
 module LinkedData
     module Models
-        class SemanticArtefactCatalog < LinkedData::Models::Base
+        class SemanticArtefactCatalog < LinkedData::Models::ModBase
 
 
             model :SemanticArtefactCatalog, namespace: :mod, scheme: File.join(__dir__, '../../../../config/schemes/semantic_artefact_catalog.yml'),
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb
index 114059b4..e4128f64 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog_record.rb
@@ -1,6 +1,6 @@
 module LinkedData
   module Models
-    class SemanticArtefactCatalogRecord < LinkedData::Models::Base
+    class SemanticArtefactCatalogRecord < LinkedData::Models::ModBase
       include LinkedData::Concerns::SemanticArtefact::AttributeMapping
       include LinkedData::Concerns::SemanticArtefact::AttributeFetcher
 
@@ -70,7 +70,7 @@ def self.all(attributes, page, pagesize)
             sacr.bring(*attributes) if attributes
           end
         end
-        Goo::Base::Page.new(page, pagesize, all_count, all_records)
+        LinkedData::Models::HydraPage.new(page, pagesize, all_count, all_records)
       end
       
       private
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
index 21ad3299..cd7e39b3 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
@@ -1,7 +1,7 @@
 module LinkedData
     module Models
 
-        class SemanticArtefactDistribution < LinkedData::Models::Base
+        class SemanticArtefactDistribution < LinkedData::Models::ModBase
             include LinkedData::Concerns::SemanticArtefact::AttributeMapping
             include LinkedData::Concerns::SemanticArtefact::AttributeFetcher
 
diff --git a/lib/ontologies_linked_data/monkeypatches/object.rb b/lib/ontologies_linked_data/monkeypatches/object.rb
index 45599d1b..38fa5cff 100644
--- a/lib/ontologies_linked_data/monkeypatches/object.rb
+++ b/lib/ontologies_linked_data/monkeypatches/object.rb
@@ -190,6 +190,8 @@ def enumerable_handling(options, &block)
         new_hash[key] = value.to_flex_hash(options, &block)
       end
       return new_hash
+    elsif kind_of?(LinkedData::Models::HydraPage)
+      return self.convert_hydra_page(options, &block)
     elsif kind_of?(Goo::Base::Page)
       return convert_goo_page(options, &block)
     end
diff --git a/lib/ontologies_linked_data/serializers/json.rb b/lib/ontologies_linked_data/serializers/json.rb
index e4161b49..1aa67f72 100644
--- a/lib/ontologies_linked_data/serializers/json.rb
+++ b/lib/ontologies_linked_data/serializers/json.rb
@@ -7,48 +7,95 @@ class JSON
 
       def self.serialize(obj, options = {})
 
+        return serialize_mod_objects(obj, options) if mod_object?(obj)
 
+        # Handle the serialization for all other objects in the standard way
         hash = obj.to_flex_hash(options) do |hash, hashed_obj|
-          current_cls = hashed_obj.respond_to?(:klass) ? hashed_obj.klass : hashed_obj.class
-          result_lang = self.get_languages(get_object_submission(hashed_obj), options[:lang]) if result_lang.nil?
+          process_common_serialization(hash, hashed_obj, options)
+        end
+        MultiJson.dump(hash)
+      end
+      
+      def self.serialize_mod_objects(obj, options = {})
+        # using one context and links in mod objects
+        global_links, global_context = {}, {}
 
-          # Add the id to json-ld attribute
-          if current_cls.ancestors.include?(LinkedData::Hypermedia::Resource) && !current_cls.embedded? && hashed_obj.respond_to?(:id)
-            prefixed_id = LinkedData::Models::Base.replace_url_id_to_prefix(hashed_obj.id)
-            hash["@id"] = prefixed_id.to_s
-          end
+        hash = obj.to_flex_hash(options) do |hash, hashed_obj|
+          process_common_serialization(hash, hashed_obj, options, global_links, global_context)
+        end
 
-          # Add the type
-          hash["@type"] = type(current_cls, hashed_obj) if hash["@id"]
-
-          # Generate links
-          # NOTE: If this logic changes, also change in xml.rb
-          if generate_links?(options)
-            links = LinkedData::Hypermedia.generate_links(hashed_obj)
-            unless links.empty?
-              hash["links"] = links
-              hash["links"].merge!(generate_links_context(hashed_obj)) if generate_context?(options)
-            end
-          end
+        result = {}
+        # handle adding the context for HydraPage
+        if obj.is_a?(LinkedData::Models::HydraPage)
+          global_context["@context"] ||= {}
+          global_context["@context"].merge!(LinkedData::Models::HydraPage.generate_hydra_context)
+        end
+        result.merge!(global_context) unless global_context.empty?
+        result.merge!(hash) if hash.is_a?(Hash)
+        result.merge!(global_links) unless global_links.empty?
+        MultiJson.dump(result)
+      end
+
+      
+      private
+      
+      def self.process_common_serialization(hash, hashed_obj, options, global_links= nil, global_context= nil)
+        current_cls = hashed_obj.respond_to?(:klass) ? hashed_obj.klass : hashed_obj.class
+        result_lang = get_languages(get_object_submission(hashed_obj), options[:lang])
+
+        add_id_and_type(hash, hashed_obj, current_cls)
+        add_links(hash, hashed_obj, options, global_links) if generate_links?(options)
+        add_context(hash, hashed_obj, options, current_cls, result_lang, global_context) if generate_context?(options)
+      end
 
-          # Generate context
+      def self.add_id_and_type(hash, hashed_obj, current_cls)
+        return unless current_cls.ancestors.include?(LinkedData::Hypermedia::Resource) && !current_cls.embedded? && hashed_obj.respond_to?(:id)
+
+        hash["@id"] = LinkedData::Models::Base.replace_url_id_to_prefix(hashed_obj.id).to_s
+        hash["@type"] = type(current_cls, hashed_obj) if hash["@id"]
+      end
+
+      def self.add_links(hash, hashed_obj, options, global_links)
+        return if global_links&.any?
+        
+        links = LinkedData::Hypermedia.generate_links(hashed_obj)
+        return if links.empty?
+
+        if global_links.nil?
+          hash["links"] = links
+          hash["links"].merge!(generate_links_context(hashed_obj)) if generate_context?(options)
+        elsif global_links.empty?
+          global_links["links"] = links
+          global_links["links"].merge!(generate_links_context(hashed_obj)) if generate_context?(options)
+        end
+      end
+
+      def self.add_context(hash, hashed_obj, options, current_cls, result_lang, global_context)
+        return if global_context&.any?
+
+        if global_context.nil?
           if current_cls.ancestors.include?(Goo::Base::Resource) && !current_cls.embedded?
-            if generate_context?(options)
-              context = generate_context(hashed_obj, hash.keys, options)
-              hash.merge!(context)
-            end
+            context = generate_context(hashed_obj, hash.keys, options)
+            hash.merge!(context)
           elsif (hashed_obj.instance_of?(LinkedData::Models::ExternalClass) || hashed_obj.instance_of?(LinkedData::Models::InterportalClass)) && !current_cls.embedded?
             # Add context for ExternalClass
-            context_hash = { "@vocab" => Goo.vocabulary.to_s, "prefLabel" => "http://data.bioontology.org/metadata/skosprefLabel" }
-            context = { "@context" => context_hash }
-            hash.merge!(context)
+            external_class_context = { "@context" => { "@vocab" => Goo.vocabulary.to_s, "prefLabel" => "http://data.bioontology.org/metadata/skosprefLabel" } }
+            hash.merge!(external_class_context)
           end
           hash['@context']['@language'] = result_lang if hash['@context']
+        elsif global_context.empty?
+          context = generate_context(hashed_obj, hash.keys, options)
+          global_context.replace(context)
+          global_context["@context"]["@language"] = result_lang unless global_context.empty?
         end
-        MultiJson.dump(hash)
       end
 
-      private
+      def self.mod_object?(obj)
+        return false if obj.nil?
+        single_object = (obj.class == Array) && obj.any? ? obj.first : obj
+        single_object.class.ancestors.include?(LinkedData::Models::HydraPage) || single_object.class.ancestors.include?(LinkedData::Models::ModBase)
+      end
+      
 
       def self.get_object_submission(obj)
         obj.class.respond_to?(:attributes) && obj.class.attributes.include?(:submission) ? obj.submission : nil
diff --git a/test/models/mod/test_artefact.rb b/test/models/mod/test_artefact.rb
index ecabe518..20885abd 100644
--- a/test/models/mod/test_artefact.rb
+++ b/test/models/mod/test_artefact.rb
@@ -3,13 +3,18 @@
 
 class TestArtefact < LinkedData::TestOntologyCommon
 
+    def self.before_suite
+        backend_4s_delete
+        helper = LinkedData::TestOntologyCommon.new(self)
+        helper.init_test_ontology_msotest "STY"
+    end
+
     def test_create_artefact
         sa = LinkedData::Models::SemanticArtefact.new
         assert_equal LinkedData::Models::SemanticArtefact , sa.class
     end
 
     def test_find_artefact
-        create_test_ontology
         sa = LinkedData::Models::SemanticArtefact.find('STY')
         assert_equal LinkedData::Models::SemanticArtefact , sa.class
         assert_equal "STY", sa.acronym
@@ -25,7 +30,6 @@ def test_goo_attrs_to_load
     end
 
     def test_bring_attrs
-        create_test_ontology
         r = LinkedData::Models::SemanticArtefact.find('STY')
         r.bring(*LinkedData::Models::SemanticArtefact.goo_attrs_to_load([:all]))
         ont = r.ontology
@@ -77,7 +81,6 @@ def test_bring_attrs
 
 
     def test_latest_distribution
-        create_test_ontology
         sa = LinkedData::Models::SemanticArtefact.find('STY')
         assert_equal "STY", sa.acronym
         latest_distribution = sa.latest_distribution(status: :any)
@@ -87,25 +90,26 @@ def test_latest_distribution
         assert_equal 1, latest_distribution.submission.submissionId
     end
     
+    def test_all_artefacts
+        attributes = LinkedData::Models::SemanticArtefact.goo_attrs_to_load([])
+        page = 1
+        pagesize = 1
+        all_artefacts = LinkedData::Models::SemanticArtefact.all_artefacts(attributes, page, pagesize)
+        assert_equal LinkedData::Models::HydraPage, all_artefacts.class
+        assert_equal 1, all_artefacts.length
+        assert_equal LinkedData::Models::SemanticArtefact, all_artefacts[0].class
+    end
+
     def test_distributions
-        create_test_ontology
         r = LinkedData::Models::SemanticArtefact.find('STY')
-        options = {
-            status: "ANY",
-            includes: LinkedData::Models::SemanticArtefactDistribution.goo_attrs_to_load([])
-        }
-        all_distros = r.all_distributions(options)
-
-        assert_equal Array, all_distros.class
-        assert_equal 1, all_distros.length
+        attributes =  LinkedData::Models::SemanticArtefactDistribution.goo_attrs_to_load([])
+        page = 1
+        pagesize = 1
+        all_distros = r.all_distributions(attributes, page, pagesize)
+        assert_equal LinkedData::Models::HydraPage, all_distros.class
         assert_equal 1, all_distros.length
         assert_equal LinkedData::Models::SemanticArtefactDistribution, all_distros[0].class
         assert_equal Set[:distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, :synonymProperty, :definitionProperty, :accessURL, :downloadURL], all_distros[0].loaded_attributes
     end
-    
-    private
-    def create_test_ontology
-        acr = "STY"
-        init_test_ontology_msotest acr
-    end
+
 end
\ No newline at end of file

From 21b761d23cf00dc7bc62caad9aa18083c13cb32d Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 23 Apr 2025 11:22:38 +0200
Subject: [PATCH 37/66] Turn homepage to doi.org/{grantDoi} in cordis

---
 .../concerns/connectors/cordis_connector.rb              | 9 +++++++--
 lib/ontologies_linked_data/config/config.rb              | 3 +--
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index 115ae296..c21fae65 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -44,7 +44,11 @@ def map_single_project(xml_project)
       project.name = xml_project.elements['title']&.text
       project.description = xml_project.elements['objective']&.text
       
-      if url_xpath = connector_config[:project_url_xpath]
+      # Try to get the grantDoi first for homepage
+      grant_doi = xml_project.elements['identifiers/grantDoi']&.text
+      if grant_doi
+        project.homePage = "https://doi.org/#{grant_doi}"
+      elsif url_xpath = connector_config[:project_url_xpath]
         url_element = REXML::XPath.first(xml_project, url_xpath)
         project.homePage = url_element&.text || build_default_homepage(xml_project)
       else
@@ -54,6 +58,7 @@ def map_single_project(xml_project)
       project.created = DateTime.now
       project.updated = DateTime.now
       
+      # Rest of the method remains unchanged
       start_date_field = connector_config[:start_date_field] 
       end_date_field = connector_config[:end_date_field]
       
@@ -101,7 +106,7 @@ def map_single_project(xml_project)
       
       project
     end
-
+    
     def map_response(xml_data)
       begin
         doc = REXML::Document.new(xml_data)
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index 5289bde8..77616f6d 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -122,13 +122,12 @@ def config(&block)
           organization_xpath: ".//organization[@type='coordinator']",
           organization_name_element: 'legalName',                    
           organization_url_element: 'address/url',                 
-          project_url_xpath: ".//webLink[@represents='project']/physUrl",
           start_date_field: 'startDate',
           end_date_field: 'endDate',
           keyword_field: 'keywords',
           grant_number: 'id',                 
           funder: {
-            agentType: 'organization',  #
+            agentType: 'organization', 
             name: "European Commission",
             homepage: "https://ec.europa.eu"
           }

From f67735fba1744b3aba25144e64634c30c2545f39 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Thu, 24 Apr 2025 20:00:50 +0200
Subject: [PATCH 38/66] Fix: add catalog attributes and fix distribution
 attributes (#207)

* add catalog attribute and fix title distribution

* update tests

* add bytesize to distribution

* fix tests

* remove configuration from config file and remove PortalConfig model

* merge PortalConfiguration test to Catalog tests

* dumb api key for federated portals example
---
 config/config.rb.sample                       | 32 ----------
 config/schemes/semantic_artefact_catalog.yml  | 17 +++++-
 .../models/mod/semantic_artefact_catalog.rb   |  5 +-
 .../mod/semantic_artefact_distribution.rb     | 15 ++++-
 .../models/portal_config.rb                   | 57 -----------------
 test/models/mod/test_artefact.rb              |  1 -
 test/models/mod/test_artefact_catalog.rb      | 61 ++++++++++++++++---
 test/models/mod/test_artefact_distribution.rb |  2 +-
 test/models/test_portal_configuration.rb      | 27 --------
 9 files changed, 82 insertions(+), 135 deletions(-)
 delete mode 100644 lib/ontologies_linked_data/models/portal_config.rb
 delete mode 100644 test/models/test_portal_configuration.rb

diff --git a/config/config.rb.sample b/config/config.rb.sample
index d3e9f9e0..7539c8d8 100644
--- a/config/config.rb.sample
+++ b/config/config.rb.sample
@@ -92,38 +92,6 @@ begin
         link: 'https://www.googleapis.com/oauth2/v3/userinfo'
       }
     }
-
-    config.ui_name                       = 'Bioportal'
-    config.title                         = 'NCBO BioPortal'
-    config.description                   = "The world's most comprehensive repository of biomedical ontologies"
-    config.color                         = '#234979'
-    config.logo                          = ''
-    config.fundedBy                      = [
-        {
-          img_src: 'https://identity.stanford.edu/wp-content/uploads/sites/3/2020/07/block-s-right.png',
-          url: 'https://www.stanford.edu',
-
-        },
-        {
-          img_src: 'https://ontoportal.org/images/logo.png',
-          url: 'https://ontoportal.org/',
-        }
-    ]
-    config.federated_portals = {
-          'agroportal' => {
-            api: 'http://data.agroportal.lirmm.fr',
-            ui: 'http://agroportal.lirmm.fr',
-            apikey: '1cfae05f-9e67-486f-820b-b393dec5764b',
-            color: '#1e2251'
-          },
-          'bioportal' => {
-                  api: 'http://data.bioontology.org',
-                  ui: 'http://bioportal.bioontology.org',
-                  apikey: '4a5011ea-75fa-4be6-8e89-f45c8c84844e',
-                  color: '#234979'
-           },
-
-    }
   end
 rescue NameError => e
   binding.pry
diff --git a/config/schemes/semantic_artefact_catalog.yml b/config/schemes/semantic_artefact_catalog.yml
index 06ced74e..6451b110 100644
--- a/config/schemes/semantic_artefact_catalog.yml
+++ b/config/schemes/semantic_artefact_catalog.yml
@@ -63,7 +63,12 @@ fundedBy:
   helpText: "Founder of the catalog"
   example: ''
   enforcedValues: [img_src: "", url: "" ]
-  default: []
+  default: [
+    {
+      img_src: 'https://ontoportal.org/images/logo.png',
+      url: 'https://ontoportal.org/'
+    }
+  ]
 
 federated_portals:
   display: "general"
@@ -71,7 +76,15 @@ federated_portals:
   helpText: "The Federated portal"
   example: ''
   enforcedValues: [name: "", api: "", ui: "", apikey: "", color: "" ]
-  default: []
+  default: [
+    {
+      name: 'agroportal',
+      api: 'http://data.agroportal.lirmm.fr',
+      ui: 'http://agroportal.lirmm.fr',
+      apikey: "DUMMY_API_KEY_123456",
+      color: '#3cb371'
+    }
+  ]
 
 homepage:
   display: "general"
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index 6d91ae2b..73fcca74 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -168,9 +168,10 @@ class SemanticArtefactCatalog < LinkedData::Models::ModBase
                     LinkedData::Hypermedia::Link.new("replies", lambda {|s| "replies"}, LinkedData::Models::Notes::Reply.type_uri),
                     LinkedData::Hypermedia::Link.new("reviews", lambda {|s| "reviews"}, LinkedData::Models::Review.type_uri)
               
-            serialize_default :acronym, :title, :identifier, :status, :language, :type, :accessRights, :license, :rightsHolder, :description,
+            serialize_default :acronym, :title, :color, :description, :logo,:identifier, :status, :language, :type, :accessRights, :license, :rightsHolder,
                               :landingPage, :keyword, :bibliographicCitation, :created, :modified , :contactPoint, :creator, :contributor, 
-                              :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL
+                              :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL,
+                              :numberOfArtefacts, :federated_portals, :fundedBy
 
             def self.type_uri
                 namespace[model_name].to_s
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
index cd7e39b3..e1eb5c28 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
@@ -9,7 +9,7 @@ class SemanticArtefactDistribution < LinkedData::Models::ModBase
             
             # SAD attrs that map with submission
             attribute_mapped :distributionId, mapped_to: { model: :ontology_submission, attribute: :submissionId }
-            attribute_mapped :title, namespace: :dcterms, mapped_to: { model: :ontology_submission, attribute: :URI }
+            attribute_mapped :title, namespace: :dcterms, mapped_to: { model: :ontology, attribute: :name }
             attribute_mapped :deprecated, namespace: :owl, mapped_to: { model: :ontology_submission }
             attribute_mapped :hasRepresentationLanguage, namespace: :mod, mapped_to: { model: :ontology_submission, attribute: :hasOntologyLanguage }
             attribute_mapped :hasFormalityLevel, namespace: :mod, mapped_to: { model: :ontology_submission }
@@ -60,8 +60,10 @@ class SemanticArtefactDistribution < LinkedData::Models::ModBase
             attribute_mapped :classesWithNoAuthorMetadata, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
             attribute_mapped :classesWithNoDateMetadata, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
             attribute_mapped :numberOfMappings, namespace: :mod, enforce: [:integer],  mapped_to: { model: :metric }
+            attribute_mapped :byteSize, namespace: :dcat, mapped_to: { model: self }, handler: :calculate_byte_size
             
             # Attr special to SemanticArtefactDistribution
+            attribute :ontology, type: :ontology
             attribute :submission, type: :ontology_submission
 
             # Access control
@@ -69,7 +71,7 @@ class SemanticArtefactDistribution < LinkedData::Models::ModBase
             
             serialize_default :distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, 
                               :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, 
-                              :synonymProperty, :definitionProperty, :accessURL, :downloadURL
+                              :synonymProperty, :definitionProperty, :accessURL, :downloadURL, :byteSize
 
             serialize_never :submission
 
@@ -78,7 +80,7 @@ def self.distribution_id_generator(ss)
                 ss.submission.ontology.bring(:acronym) if !ss.submission.ontology.loaded_attributes.include?(:acronym)
                 raise ArgumentError, "Acronym is nil to generate id" if ss.submission.ontology.acronym.nil?
                 return RDF::URI.new(
-                  "#{(Goo.id_prefix)}artefacts/#{CGI.escape(ss.submission.ontology.acronym.to_s)}/distributions/#{ss.submission.submissionId.to_s}"
+                  "#{(Goo.id_prefix)}artefacts/#{CGI.escape(ss.ontology.acronym.to_s)}/distributions/#{ss.submission.submissionId.to_s}"
                 )
             end
 
@@ -88,6 +90,13 @@ def initialize(sub)
                 @submission = sub
                 @submission.bring(*[:submissionId, :ontology=>[:acronym, :administeredBy, :acl, :viewingRestriction]])
                 @distributionId = sub.submissionId
+                @ontology = @submission.ontology
+            end
+            
+            def calculate_byte_size
+                @submission.bring(:uploadFilePath) if @submission.bring?(:uploadFilePath)
+                updload_file_path = @submission.uploadFilePath
+                File.exist?(updload_file_path) ? File.size(updload_file_path) : 0
             end
 
 
diff --git a/lib/ontologies_linked_data/models/portal_config.rb b/lib/ontologies_linked_data/models/portal_config.rb
deleted file mode 100644
index 18169fca..00000000
--- a/lib/ontologies_linked_data/models/portal_config.rb
+++ /dev/null
@@ -1,57 +0,0 @@
-module LinkedData
-  module Models
-    class PortalConfig < LinkedData::Models::Base
-      model :SemanticArtefactCatalogue, namespace: :mod, name_with: :acronym
-      attribute :acronym, enforce: [:unique, :existence]
-      attribute :title, namespace: :dcterms, enforce: [:existence]
-      attribute :color, enforce: [:existence, :valid_hash_code]
-      attribute :description, namespace: :dcterms
-      attribute :logo, namespace: :foaf, enforce: [:url]
-      attribute :numberOfArtefacts, namespace: :mod, handler: :ontologies_count
-      attribute :federated_portals, handler: :federated_portals_settings
-      attribute :fundedBy, namespace: :foaf, enforce: [:list]
-
-      serialize_default :acronym, :title, :color, :description, :logo, :numberOfArtefacts, :federated_portals, :fundedBy
-
-      def initialize(*args)
-        super
-        init_federated_portals_settings
-      end
-
-      def self.current_portal_config
-        p = LinkedData::Models::PortalConfig.new
-
-        p.acronym = LinkedData.settings.ui_name.downcase
-        p.title = LinkedData.settings.title
-        p.description = LinkedData.settings.description
-        p.color = LinkedData.settings.color
-        p.logo = LinkedData.settings.logo
-        p.fundedBy = LinkedData.settings.fundedBy
-        p
-      end
-
-      def init_federated_portals_settings(federated_portals = nil)
-        @federated_portals = federated_portals || LinkedData.settings.federated_portals.symbolize_keys
-      end
-
-      def federated_portals_settings
-        @federated_portals
-      end
-
-      def ontologies_count
-        LinkedData::Models::Ontology.where(viewingRestriction: 'public').count
-      end
-
-      def self.valid_hash_code(inst, attr)
-        inst.bring(attr) if inst.bring?(attr)
-        str = inst.send(attr)
-
-        return if (/^#(?:[0-9a-fA-F]{3}|[0-9a-fA-F]{6})$/ === str)
-        [:valid_hash_code,
-         "Invalid hex color code: '#{str}'. Please provide a valid hex code in the format '#FFF' or '#FFFFFF'."]
-      end
-    end
-  end
-end
-
-
diff --git a/test/models/mod/test_artefact.rb b/test/models/mod/test_artefact.rb
index 20885abd..620261b5 100644
--- a/test/models/mod/test_artefact.rb
+++ b/test/models/mod/test_artefact.rb
@@ -109,7 +109,6 @@ def test_distributions
         assert_equal LinkedData::Models::HydraPage, all_distros.class
         assert_equal 1, all_distros.length
         assert_equal LinkedData::Models::SemanticArtefactDistribution, all_distros[0].class
-        assert_equal Set[:distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, :synonymProperty, :definitionProperty, :accessURL, :downloadURL], all_distros[0].loaded_attributes
     end
 
 end
\ No newline at end of file
diff --git a/test/models/mod/test_artefact_catalog.rb b/test/models/mod/test_artefact_catalog.rb
index a6c46c05..27a2beed 100644
--- a/test/models/mod/test_artefact_catalog.rb
+++ b/test/models/mod/test_artefact_catalog.rb
@@ -3,17 +3,60 @@
 
 class TestArtefactCatalog < LinkedData::TestOntologyCommon
 
+  def self.before_suite
+    backend_4s_delete
+    self.new("before_suite").teardown
+    catalog = LinkedData::Models::SemanticArtefactCatalog.new
+    catalog.save
+  end
+
+  def self.after_suite
+    self.new("before_suite").teardown
+  end
+
   def test_create_artefact_catalog
-      sac = LinkedData::Models::SemanticArtefactCatalog.new
-      assert_equal LinkedData::Models::SemanticArtefactCatalog , sac.class
-      assert_equal "http://data.bioontology.org/", sac.id.to_s
+    catalog = LinkedData::Models::SemanticArtefactCatalog.all.first
+    assert_equal LinkedData::Models::SemanticArtefactCatalog , catalog.class
+    catalog.bring(*LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([]))
+    expected = {
+      acronym: "OntoPortal",
+      title: "OntoPortal",
+      color: "#5499A3",
+      description: "Welcome to OntoPortal Appliance, your ontology repository for your ontologies",
+      status: "alpha",
+      accessRights: "public",
+      logo: "https://ontoportal.org/images/logo.png",
+      license: "https://opensource.org/licenses/BSD-2-Clause",
+      federated_portals: [
+        "{:name=>\"agroportal\", :api=>\"http://data.agroportal.lirmm.fr\", :ui=>\"http://agroportal.lirmm.fr\", :apikey=>\"DUMMY_API_KEY_123456\", :color=>\"#3cb371\"}"
+      ],
+      fundedBy: [
+        "{:img_src=>\"https://ontoportal.org/images/logo.png\", :url=>\"https://ontoportal.org/\"}"
+      ],
+      language: ["English"],
+      keyword: [],
+      bibliographicCitation: [],
+      subject: [],
+      coverage: [],
+      createdWith: [],
+      accrualMethod: [],
+      accrualPeriodicity: [],
+      wasGeneratedBy: [],
+      contactPoint: [],
+      creator: [],
+      contributor: [],
+      publisher: [],
+      id: RDF::URI("http://data.bioontology.org/")
+    }
+    assert_equal expected, catalog.to_hash
+    refute_nil catalog.numberOfArtefacts
   end
 
   def test_goo_attrs_to_load
       default_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([])
-      assert_equal [:acronym, :title, :identifier, :status, :language, :type, :accessRights, :license, :rightsHolder, 
-        :description, :landingPage, :keyword, :bibliographicCitation, :created, :modified, :contactPoint, :creator, 
-        :contributor, :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL], default_attrs
+      assert_equal [:acronym, :title, :color, :description, :logo, :identifier, :status, :language, :type, :accessRights, :license, :rightsHolder, 
+      :landingPage, :keyword, :bibliographicCitation, :created, :modified, :contactPoint, :creator, :contributor, :publisher, :subject,
+      :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL, :numberOfArtefacts, :federated_portals, :fundedBy], default_attrs
 
       specified_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:acronym, :title, :keyword, :featureList])
       assert_equal [:acronym, :title, :keyword, :featureList], specified_attrs
@@ -25,10 +68,8 @@ def test_goo_attrs_to_load
       assert_equal computed_attrs, computed_attrs_bring
   end
 
-  def test_bring_attrs
-    sac = LinkedData::Models::SemanticArtefactCatalog.new
-    assert_equal true, sac.valid?
-    sac.save
+  def test_bring_all_attrs
+    sac = LinkedData::Models::SemanticArtefactCatalog.all.first
     all_attrs_to_bring = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:all])
     sac.bring(*all_attrs_to_bring)
     assert_equal all_attrs_to_bring.sort, (sac.loaded_attributes.to_a + [:type]).sort
diff --git a/test/models/mod/test_artefact_distribution.rb b/test/models/mod/test_artefact_distribution.rb
index e99b26d3..48ad9f9d 100644
--- a/test/models/mod/test_artefact_distribution.rb
+++ b/test/models/mod/test_artefact_distribution.rb
@@ -16,7 +16,7 @@ def test_goo_attrs_to_load
         attrs = LinkedData::Models::SemanticArtefactDistribution.goo_attrs_to_load([])
         assert_equal [:distributionId, :title, :hasRepresentationLanguage, :hasSyntax, :description, :created, :modified, 
         :conformsToKnowledgeRepresentationParadigm, :usedEngineeringMethodology, :prefLabelProperty, 
-        :synonymProperty, :definitionProperty, :accessURL, :downloadURL], attrs
+        :synonymProperty, :definitionProperty, :accessURL, :downloadURL, :byteSize], attrs
     end
 
     def test_bring_attrs
diff --git a/test/models/test_portal_configuration.rb b/test/models/test_portal_configuration.rb
deleted file mode 100644
index dcebbc93..00000000
--- a/test/models/test_portal_configuration.rb
+++ /dev/null
@@ -1,27 +0,0 @@
-require_relative '../test_case'
-
-class TestPortalConfiguration < LinkedData::TestCase
-
-  def test_read_portal_config
-    config = LinkedData::Models::PortalConfig.current_portal_config
-
-    expected = { acronym: 'bioportal',
-                 title: 'NCBO BioPortal',
-                 color: '#234979',
-                 description: "The world's most comprehensive repository of biomedical ontologies",
-                 logo: '',
-                 fundedBy: [{ img_src: 'https://identity.stanford.edu/wp-content/uploads/sites/3/2020/07/block-s-right.png', url: 'https://www.stanford.edu' },
-                            { img_src: 'https://ontoportal.org/images/logo.png', url: 'https://ontoportal.org/' }],
-                 id: RDF::URI.new('http://data.bioontology.org/SemanticArtefactCatalogues/bioportal') }
-
-    assert config.valid?
-
-    assert_equal expected, config.to_hash
-
-    expected_federated_portals = { 'agroportal' => { api: 'http://data.agroportal.lirmm.fr', ui: 'http://agroportal.lirmm.fr', apikey: '1cfae05f-9e67-486f-820b-b393dec5764b', color: '#1e2251' },
-                                   'bioportal' => { api: 'http://data.bioontology.org', ui: 'http://bioportal.bioontology.org', apikey: '4a5011ea-75fa-4be6-8e89-f45c8c84844e', color: '#234979' } }.symbolize_keys
-    assert_equal expected_federated_portals, config.federated_portals
-    refute_nil config.numberOfArtefacts
-  end
-end
-

From 913ff00af28225c00133ba41cc2d51eb08cd90ff Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 25 Apr 2025 18:12:46 +0200
Subject: [PATCH 39/66] handle non existing uploadFilePath in distribution
 bytesize (#208)

---
 .../models/mod/semantic_artefact_distribution.rb              | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
index e1eb5c28..019aad3b 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_distribution.rb
@@ -95,8 +95,8 @@ def initialize(sub)
             
             def calculate_byte_size
                 @submission.bring(:uploadFilePath) if @submission.bring?(:uploadFilePath)
-                updload_file_path = @submission.uploadFilePath
-                File.exist?(updload_file_path) ? File.size(updload_file_path) : 0
+                upload_file_path = @submission.uploadFilePath
+                File.exist?(upload_file_path.to_s) ? File.size(upload_file_path.to_s) : 0
             end
 
 

From a1d599f6727844efd6bb331ac669b4064daf4349 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Mon, 28 Apr 2025 11:12:22 +0200
Subject: [PATCH 40/66] Add fixed agents for funder

---
 .../concerns/connectors/anr_connector.rb      | 13 ++++---------
 .../concerns/connectors/cordis_connector.rb   | 10 +++-------
 lib/ontologies_linked_data/config/config.rb   | 19 ++++---------------
 3 files changed, 11 insertions(+), 31 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index 4a715eac..2a540ef6 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -60,7 +60,7 @@ def find_matching_project(results, mapping)
     def build_project_data(result, mapping)
       project = LinkedData::Models::Project.new
       
-      project.source = connector_config[:source] || 'ANR'
+      project.source = connector_config[:source]
       project.type = connector_config[:project_type] || 'FundedProject'
       project.acronym = result[mapping[:acronym]]
       project.name = result[mapping[:name]]
@@ -88,14 +88,9 @@ def build_project_data(result, mapping)
       
       project.grant_number = result[mapping[:grant_number]]
       
-      funder_config = connector_config[:funder]
-      if funder_config
-        funder = LinkedData::Models::Agent.new
-        funder.agentType = funder_config[:agentType]  
-        funder.name = funder_config[:name]
-        funder.homepage = funder_config[:homepage] if funder_config[:homepage]
-        
-        project.funder = funder
+      funder_id = connector_config[:funder]
+      if funder_id
+        project.funder = RDF::URI.new(funder_id)  
       end
       
       project.ontologyUsed = []
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index c21fae65..fd0bf1ad 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -93,13 +93,9 @@ def map_single_project(xml_project)
         project.organization = organization
       end
       
-      funder_config = connector_config[:funder]
-      if funder_config
-        funder = LinkedData::Models::Agent.new
-        funder.agentType = funder_config[:agentType]
-        funder.name = funder_config[:name]
-        funder.homepage = funder_config[:homepage] if funder_config[:homepage]
-        project.funder = funder
+      funder_id = connector_config[:funder]
+      if funder_id
+        project.funder = RDF::URI.new(funder_id)
       end
       
       project.ontologyUsed = []
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index 77616f6d..cd46f04c 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -126,11 +126,7 @@ def config(&block)
           end_date_field: 'endDate',
           keyword_field: 'keywords',
           grant_number: 'id',                 
-          funder: {
-            agentType: 'organization', 
-            name: "European Commission",
-            homepage: "https://ec.europa.eu"
-          }
+          funder:"https://datastage.earthportal.eu/Agents/50112440-0633-013e-05ab-020000e64a65"
         },
         'ANR_FRANCE2030' => {
           base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/ods_france2030-projets/records",
@@ -150,11 +146,8 @@ def config(&block)
             region: 'region_du_projet',
             year: 'annee_de_contractualisation'
           },
-          funder: {
-            agentType: 'organization',
-            name: "Agence Nationale de la Recherche",
-            homepage: "https://anr.fr"
-          }
+          funder:"https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"
+          
         },
         'ANR_AAPG' => {
           base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/aapg-projets/records",
@@ -174,11 +167,7 @@ def config(&block)
             region: 'libelle_de_region_tutelle_hebergeante',
             year: 'edition'
           },
-          funder: {
-            agentType: 'organization',
-            name: "Agence Nationale de la Recherche",
-            homepage: "https://anr.fr"
-          }
+          funder:"https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"
         }
       }
     }

From a4633fbfa07190d754f727ba85ac410385558b9a Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Wed, 7 May 2025 11:01:47 +0200
Subject: [PATCH 41/66] index embedded agents as json (#209)

---
 lib/ontologies_linked_data/models/agents/agent.rb | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 24601748..323c4aa5 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -26,7 +26,13 @@ class Agent < LinkedData::Models::Base
       enable_indexing(:agents_metadata)
 
       def embedded_doc
-        "#{self.name} #{self.acronym} #{self.email} #{self.agentType}"
+        {
+          "id": "#{self.id}",
+          "name": "#{self.name}",
+          "acronym": "#{self.acronym}",
+          "email": "#{self.email}",
+          "agentType": "#{self.agentType}"
+        }.to_json
       end
 
       def self.load_agents_usages(agents = [], agent_attributes =  OntologySubmission.agents_attr_uris)

From 905eb1cb30a5232969f20b83f258e585f57dd207 Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Fri, 16 May 2025 17:14:46 +0200
Subject: [PATCH 42/66] exclude serialized methods from nested (embedded)
 resources (#211)

---
 lib/ontologies_linked_data/monkeypatches/object.rb | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/lib/ontologies_linked_data/monkeypatches/object.rb b/lib/ontologies_linked_data/monkeypatches/object.rb
index 38fa5cff..12acee2c 100644
--- a/lib/ontologies_linked_data/monkeypatches/object.rb
+++ b/lib/ontologies_linked_data/monkeypatches/object.rb
@@ -33,12 +33,13 @@ def to_flex_hash(options = {}, &block)
       only = Set.new(options[:include_for_class] || [])
     end
 
-    if all # Get everything
+    if all && !options[:nested] # Get everything if not an embedded object
       methods = self.class.hypermedia_settings[:serialize_methods] if self.is_a?(LinkedData::Hypermedia::Resource)
     end
 
-    # Check to see if we're nested, if so remove necessary properties
+    # Check to see if we're nested, if so remove necessary properties and serialize methods
     only = only - do_not_serialize_nested(options)
+    only -= self.class.hypermedia_settings[:serialize_methods] if options[:nested]
 
     # Determine whether to use defaults from the DSL or all attributes
     hash = populate_attributes(hash, all, only, options)

From 821b389d8699cedbe9d45a7683825fa9b6e0f2ff Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Fri, 16 May 2025 17:15:22 +0200
Subject: [PATCH 43/66] limit agents embedded affiliation attributes (#212)

---
 lib/ontologies_linked_data/models/agents/agent.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 323c4aa5..7a607c9b 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -17,7 +17,7 @@ class Agent < LinkedData::Models::Base
       attribute :affiliations, enforce: %i[Agent list is_organization], namespace: :org, property: :memberOf
       attribute :creator, type: :user, enforce: [:existence]
       embed :identifiers, :affiliations
-      embed_values affiliations: LinkedData::Models::Agent.goo_attrs_to_load + [identifiers: LinkedData::Models::AgentIdentifier.goo_attrs_to_load]
+      embed_values affiliations: [:name, :agentType, :homepage, :acronym, :email, :identifiers]
       serialize_methods :usages
 
       write_access :creator

From a7fba21bad56859712d7cdcdd7b14adad194e6c8 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Tue, 20 May 2025 16:18:51 +0200
Subject: [PATCH 44/66] Fix: change links from global to local && change
 catalog links to use /mod-api namespace (#213)

---
 .../models/mod/semantic_artefact_catalog.rb   | 36 ++++++++++---------
 .../serializers/json.rb                       | 23 ++++--------
 2 files changed, 26 insertions(+), 33 deletions(-)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index 73fcca74..c963784d 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -41,18 +41,18 @@ class SemanticArtefactCatalog < LinkedData::Models::ModBase
             attribute :relation, namespace: :dcterms, enforce: [:string]
             attribute :hasPolicy, namespace: :mod, enforce: [:string]
             attribute :themeTaxonomy, namespace: :mod, enforce: [:string]
-            
+
             attribute :created, namespace: :dcterms, enforce: [:date]
             attribute :curatedOn, namespace: :pav, enforce: [:date]
-            
+
             attribute :deprecated, namespace: :owl, enforce: [:boolean]
-            
+
             attribute :homepage, namespace: :foaf, enforce: [:url], default: ->(s) { RDF::URI("http://#{LinkedData.settings.ui_host}") }
             attribute :logo, namespace: :foaf, enforce: [:url]
             attribute :license, namespace: :dcterms, enforce: [:url]
             attribute :mailingList, namespace: :mod, enforce: [:url]
             attribute :fairScore, namespace: :mod, enforce: [:url]
-            
+
             attribute :federated_portals, enforce: [:list]
             attribute :fundedBy, namespace: :foaf, enforce: [:list]
             attribute :language, namespace: :dcterms, enforce: [:list]
@@ -132,7 +132,7 @@ class SemanticArtefactCatalog < LinkedData::Models::ModBase
                 numberOfMappings: :mappings_counts,
                 numberOfAgents: :agents_counts
             }
-              
+
             METRICS_ATTRIBUTES.each do |attr_name, config|
                 handler = config.is_a?(Hash) ? config[:handler] : config
                 mapped_to = config.is_a?(Hash) ? config[:mapped_to] : attr_name
@@ -140,15 +140,12 @@ class SemanticArtefactCatalog < LinkedData::Models::ModBase
                 define_method(handler) { calculate_attr_from_metrics(mapped_to) }
             end
 
-            link_to LinkedData::Hypermedia::Link.new("doc/legacy-api", lambda {|s| "documentation"}, nil),
-                    LinkedData::Hypermedia::Link.new("doc/mod-api", lambda {|s| "doc/api"}, nil),
+            link_to LinkedData::Hypermedia::Link.new("documentation", lambda {|s| "documentation"}, nil),
                     LinkedData::Hypermedia::Link.new("ontologies", lambda {|s| "ontologies"},  LinkedData::Models::Ontology.type_uri),
                     LinkedData::Hypermedia::Link.new("ontologies_full", lambda {|s| "ontologies_full"}, LinkedData::Models::Ontology.type_uri),
                     LinkedData::Hypermedia::Link.new("ontology_metadata", lambda {|s| "ontology_metadata"}, nil),
                     LinkedData::Hypermedia::Link.new("submissions", lambda {|s| "submissions"}, LinkedData::Models::OntologySubmission.type_uri),
                     LinkedData::Hypermedia::Link.new("submission_metadata", lambda {|s| "submission_metadata"}, nil),
-                    LinkedData::Hypermedia::Link.new("artefacts", lambda {|s| "artefacts"}, LinkedData::Models::SemanticArtefact.type_uri),
-                    LinkedData::Hypermedia::Link.new("records", lambda {|s| "records"}, LinkedData::Models::SemanticArtefactCatalogRecord.type_uri),
                     LinkedData::Hypermedia::Link.new("users", lambda {|s| "users"}, LinkedData::Models::User.type_uri),
                     LinkedData::Hypermedia::Link.new("agents", lambda {|s| "agents"}, LinkedData::Models::Agent.type_uri),
                     LinkedData::Hypermedia::Link.new("groups", lambda {|s| "groups"}, LinkedData::Models::Group.type_uri),
@@ -166,17 +163,22 @@ class SemanticArtefactCatalog < LinkedData::Models::ModBase
                     LinkedData::Hypermedia::Link.new("annotator", lambda {|s| "annotator"}, nil),
                     LinkedData::Hypermedia::Link.new("notes", lambda {|s| "notes"}, LinkedData::Models::Note.type_uri),
                     LinkedData::Hypermedia::Link.new("replies", lambda {|s| "replies"}, LinkedData::Models::Notes::Reply.type_uri),
-                    LinkedData::Hypermedia::Link.new("reviews", lambda {|s| "reviews"}, LinkedData::Models::Review.type_uri)
-              
+                    LinkedData::Hypermedia::Link.new("reviews", lambda {|s| "reviews"}, LinkedData::Models::Review.type_uri),
+                    LinkedData::Hypermedia::Link.new("mod-api_documentation", lambda {|s| "mod-api/doc"}, nil),
+                    LinkedData::Hypermedia::Link.new("artefacts", lambda {|s| "mod-api/artefacts"}, LinkedData::Models::SemanticArtefact.type_uri),
+                    LinkedData::Hypermedia::Link.new("records", lambda {|s| "mod-api/records"}, LinkedData::Models::SemanticArtefactCatalogRecord.type_uri),
+                    LinkedData::Hypermedia::Link.new("search_content", lambda {|s| "mod-api/search/content"}, nil),
+                    LinkedData::Hypermedia::Link.new("search_metadata", lambda {|s| "mod-api/search/metadata"}, nil)
+
             serialize_default :acronym, :title, :color, :description, :logo,:identifier, :status, :language, :type, :accessRights, :license, :rightsHolder,
-                              :landingPage, :keyword, :bibliographicCitation, :created, :modified , :contactPoint, :creator, :contributor, 
+                              :landingPage, :keyword, :bibliographicCitation, :created, :modified , :contactPoint, :creator, :contributor,
                               :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL,
                               :numberOfArtefacts, :federated_portals, :fundedBy
 
             def self.type_uri
                 namespace[model_name].to_s
             end
-            
+
             def ontologies_count
                 LinkedData::Models::Ontology.where(viewingRestriction: 'public').count
             end
@@ -204,11 +206,11 @@ def set_uri_regex_pattern
             def set_preferred_namespace_uri
                 ""
             end
-            
+
             def set_preferred_namespace_prefix
                 ""
             end
-            
+
             def set_metadata_voc
                 ""
             end
@@ -216,11 +218,11 @@ def set_metadata_voc
             def mod_uri
                  RDF::URI("https://w3id.org/mod")
             end
-            
+
             def set_feature_list
                 []
             end
-            
+
             def set_supported_schema
                 []
             end
diff --git a/lib/ontologies_linked_data/serializers/json.rb b/lib/ontologies_linked_data/serializers/json.rb
index 1aa67f72..187b460d 100644
--- a/lib/ontologies_linked_data/serializers/json.rb
+++ b/lib/ontologies_linked_data/serializers/json.rb
@@ -18,10 +18,10 @@ def self.serialize(obj, options = {})
       
       def self.serialize_mod_objects(obj, options = {})
         # using one context and links in mod objects
-        global_links, global_context = {}, {}
+        global_context = {}
 
         hash = obj.to_flex_hash(options) do |hash, hashed_obj|
-          process_common_serialization(hash, hashed_obj, options, global_links, global_context)
+          process_common_serialization(hash, hashed_obj, options, global_context)
         end
 
         result = {}
@@ -32,19 +32,18 @@ def self.serialize_mod_objects(obj, options = {})
         end
         result.merge!(global_context) unless global_context.empty?
         result.merge!(hash) if hash.is_a?(Hash)
-        result.merge!(global_links) unless global_links.empty?
         MultiJson.dump(result)
       end
 
       
       private
       
-      def self.process_common_serialization(hash, hashed_obj, options, global_links= nil, global_context= nil)
+      def self.process_common_serialization(hash, hashed_obj, options, global_context= nil)
         current_cls = hashed_obj.respond_to?(:klass) ? hashed_obj.klass : hashed_obj.class
         result_lang = get_languages(get_object_submission(hashed_obj), options[:lang])
 
         add_id_and_type(hash, hashed_obj, current_cls)
-        add_links(hash, hashed_obj, options, global_links) if generate_links?(options)
+        add_links(hash, hashed_obj, options) if generate_links?(options)
         add_context(hash, hashed_obj, options, current_cls, result_lang, global_context) if generate_context?(options)
       end
 
@@ -55,19 +54,11 @@ def self.add_id_and_type(hash, hashed_obj, current_cls)
         hash["@type"] = type(current_cls, hashed_obj) if hash["@id"]
       end
 
-      def self.add_links(hash, hashed_obj, options, global_links)
-        return if global_links&.any?
-        
+      def self.add_links(hash, hashed_obj, options)
         links = LinkedData::Hypermedia.generate_links(hashed_obj)
         return if links.empty?
-
-        if global_links.nil?
-          hash["links"] = links
-          hash["links"].merge!(generate_links_context(hashed_obj)) if generate_context?(options)
-        elsif global_links.empty?
-          global_links["links"] = links
-          global_links["links"].merge!(generate_links_context(hashed_obj)) if generate_context?(options)
-        end
+        hash["links"] = links
+        hash["links"].merge!(generate_links_context(hashed_obj)) if generate_context?(options)
       end
 
       def self.add_context(hash, hashed_obj, options, current_cls, result_lang, global_context)

From 28d4083675acfc852c63198931e8ea5b3edfdfbc Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Wed, 21 May 2025 10:16:52 +0200
Subject: [PATCH 45/66] Revert "exclude serialized methods from nested
 (embedded) resources (#211)"

This reverts commit 905eb1cb30a5232969f20b83f258e585f57dd207.
---
 lib/ontologies_linked_data/monkeypatches/object.rb | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/lib/ontologies_linked_data/monkeypatches/object.rb b/lib/ontologies_linked_data/monkeypatches/object.rb
index 12acee2c..38fa5cff 100644
--- a/lib/ontologies_linked_data/monkeypatches/object.rb
+++ b/lib/ontologies_linked_data/monkeypatches/object.rb
@@ -33,13 +33,12 @@ def to_flex_hash(options = {}, &block)
       only = Set.new(options[:include_for_class] || [])
     end
 
-    if all && !options[:nested] # Get everything if not an embedded object
+    if all # Get everything
       methods = self.class.hypermedia_settings[:serialize_methods] if self.is_a?(LinkedData::Hypermedia::Resource)
     end
 
-    # Check to see if we're nested, if so remove necessary properties and serialize methods
+    # Check to see if we're nested, if so remove necessary properties
     only = only - do_not_serialize_nested(options)
-    only -= self.class.hypermedia_settings[:serialize_methods] if options[:nested]
 
     # Determine whether to use defaults from the DSL or all attributes
     hash = populate_attributes(hash, all, only, options)

From 6b976ec2a5fddf3b8d0f353ce01269642c22273a Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Wed, 21 May 2025 16:18:43 +0200
Subject: [PATCH 46/66] exclude serialized methods from nested (embedded)
 agents (#214)

---
 lib/ontologies_linked_data/models/agents/agent.rb | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 7a607c9b..853f3ccd 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -20,6 +20,8 @@ class Agent < LinkedData::Models::Base
       embed_values affiliations: [:name, :agentType, :homepage, :acronym, :email, :identifiers]
       serialize_methods :usages
 
+      prevent_serialize_when_nested :usages  
+          
       write_access :creator
       access_control_load :creator
 

From 766c6b0a5f4dd4bad4e11285b818f40195c72524 Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Thu, 22 May 2025 10:20:49 +0200
Subject: [PATCH 47/66] Feature: add keywords loading during agent
 serialization (#205)

* add keywords loading during agent serialization

* Limit agents values to the requested ones in the usages request
---
 .../models/agents/agent.rb                     | 18 +++++++++++++++++-
 1 file changed, 17 insertions(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 853f3ccd..6f7888b5 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -17,8 +17,8 @@ class Agent < LinkedData::Models::Base
       attribute :affiliations, enforce: %i[Agent list is_organization], namespace: :org, property: :memberOf
       attribute :creator, type: :user, enforce: [:existence]
       embed :identifiers, :affiliations
+      serialize_methods :usages, :keywords
       embed_values affiliations: [:name, :agentType, :homepage, :acronym, :email, :identifiers]
-      serialize_methods :usages
 
       prevent_serialize_when_nested :usages  
           
@@ -41,6 +41,7 @@ def self.load_agents_usages(agents = [], agent_attributes =  OntologySubmission.
         q = Goo.sparql_query_client.select(:id, :property, :agent, :status).distinct.from(LinkedData::Models::OntologySubmission.uri_type).where([:id,LinkedData::Models::OntologySubmission.attribute_uri(:submissionStatus),:status], [:id, :property, :agent])
         q = q.filter("?status = <#{RDF::URI.new(LinkedData::Models::SubmissionStatus.id_prefix + 'RDF')}> || ?status = <#{RDF::URI.new(LinkedData::Models::SubmissionStatus.id_prefix + 'UPLOADED')}>")
         q = q.filter(agent_attributes.map{|attr| "?property = <#{attr}>"}.join(' || '))
+        q = q.values(:agent,  *agents.map { |agent| RDF::URI(agent.id.to_s)})
 
         data = q.each_solution.group_by{|x| x[:agent]}
 
@@ -65,6 +66,21 @@ def usages(force_update: false)
         @usages
       end
 
+      def self.load_agents_keywords(agent)
+        q = Goo.sparql_query_client.select(:keywords).distinct.from(LinkedData::Models::OntologySubmission.uri_type).where([:id, :property, :agent], [:id, LinkedData::Models::OntologySubmission.attribute_uri(:keywords), :keywords])
+        q = q.filter("?agent = <#{agent.id}>")
+        q = q.values(:id,  *agent.usages.keys.map { |uri| RDF::URI(uri.to_s)})
+
+
+        keywords = q.solutions.map { |solution| solution[:keywords].to_s }
+        agent.instance_variable_set("@keywords", keywords)
+        agent.loaded_attributes.add(:keywords)
+      end
+      def keywords(force_update: false)
+        self.class.load_agents_keywords(self) if  !instance_variable_defined?("@keywords")  || force_update
+        @keywords
+      end
+
       def unique_identifiers(inst, attr)
         inst.bring(attr) if inst.bring?(attr)
         identifiers = inst.send(attr)

From 4c4d4e038c3ae5b537a7e784f384503e98905c3d Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Wed, 28 May 2025 17:08:02 +0200
Subject: [PATCH 48/66] add :groups, :categories, :relatedAgents,
 :affiliatedAgents attributs to the agent model (#215)

Co-authored-by: AmineBKF <boukerfa.ma@gmail.com>
---
 .../models/agents/agent.rb                    | 96 ++++++++++++++++++-
 1 file changed, 94 insertions(+), 2 deletions(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 6f7888b5..48fea4c9 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -17,10 +17,10 @@ class Agent < LinkedData::Models::Base
       attribute :affiliations, enforce: %i[Agent list is_organization], namespace: :org, property: :memberOf
       attribute :creator, type: :user, enforce: [:existence]
       embed :identifiers, :affiliations
-      serialize_methods :usages, :keywords
+      serialize_methods :usages, :keywords, :groups, :categories, :relatedAgents, :affiliatedAgents
       embed_values affiliations: [:name, :agentType, :homepage, :acronym, :email, :identifiers]
 
-      prevent_serialize_when_nested :usages  
+      prevent_serialize_when_nested :usages, :affiliations, :keywords, :groups, :categories, :relatedAgents, :affiliatedAgents
           
       write_access :creator
       access_control_load :creator
@@ -81,6 +81,72 @@ def keywords(force_update: false)
         @keywords
       end
 
+      def self.load_agents_categories_groups(agent)
+        q = Goo.sparql_query_client.select(:groups, :categories).distinct.from(LinkedData::Models::Ontology.uri_type)
+        q = q.optional([:id, LinkedData::Models::Ontology.attribute_uri(:group), :groups])
+        q = q.optional([:id, LinkedData::Models::Ontology.attribute_uri(:hasDomain), :categories])
+        # Strip trailing '/submissions/<id>' from URIs
+        uris = agent.usages.keys.map do |uri|
+          cleaned_uri = uri.to_s.sub(/\/submissions\/\d+$/, "")
+          RDF::URI(cleaned_uri)
+        end
+        q = q.values(:id, *uris)
+        
+        [:groups, :categories].each do |attr|
+          values = q.solutions.map { |solution| solution[attr] }.compact.uniq.reject(&:empty?)
+          agent.instance_variable_set("@#{attr}", values)
+          agent.loaded_attributes.add(attr)
+        end
+      end 
+      def categories
+        self.class.load_agents_categories_groups(self) if !instance_variable_defined?("@categories")  
+        @categories
+      end
+      def groups
+        self.class.load_agents_categories_groups(self) if !instance_variable_defined?("@groups")  
+        @groups
+      end
+
+
+      def self.load_related_agents(agent)
+        q = Goo.sparql_query_client.select(:id, :agent).distinct.from(LinkedData::Models::OntologySubmission.uri_type).where([:id, :property, :agent])
+        q = q.filter(OntologySubmission.agents_attr_uris.map{|attr| "?property = <#{attr}>"}.join(' || '))
+        q = q.values(:id,  *agent.usages.keys.map { |uri| RDF::URI(uri.to_s)})
+        relatedAgentsIds = q.each_solution.group_by{|x| x[:agent].to_s}
+                            .reject { |agent_id, _| agent_id == agent.id.to_s }
+                            .transform_values { |solutions| solutions.map { |s| s[:id] } }
+        # map the previously fetched usages
+        relatedAgents = self.fetch_agents_data(relatedAgentsIds.keys).each { |agent| agent.usages = relatedAgentsIds[agent.id.to_s].map(&:to_s).uniq }
+        
+        agent.instance_variable_set("@relatedAgents", relatedAgents)
+        agent.loaded_attributes.add(:relatedAgents)
+      end     
+      
+      def relatedAgents
+        self.class.load_related_agents(self) if !instance_variable_defined?("@relatedAgents")  
+        @relatedAgents
+      end
+
+      def self.load_affiliated_agents(agent)
+        return nil unless agent.agentType == 'organization'
+        q = Goo.sparql_query_client.select(:id).distinct.from(LinkedData::Models::Agent.uri_type)
+        q = q.where([:id, LinkedData::Models::Agent.attribute_uri(:affiliations), :agent])
+        q = q.values(:agent,  *agent.id)
+        
+        affiliatedAgentsIds = q.solutions.map { |solution| solution[:id].to_s }.uniq
+        affiliatedAgents = self.fetch_agents_data(affiliatedAgentsIds) 
+
+        
+        agent.instance_variable_set("@affiliatedAgents", affiliatedAgents)
+        agent.loaded_attributes.add(:affiliatedAgents)
+
+      end     
+      
+      def affiliatedAgents
+        self.class.load_affiliated_agents(self) if !instance_variable_defined?("@affiliatedAgents")
+        @affiliatedAgents
+      end
+
       def unique_identifiers(inst, attr)
         inst.bring(attr) if inst.bring?(attr)
         identifiers = inst.send(attr)
@@ -107,6 +173,32 @@ def is_organization(inst, attr)
 
         []
       end
+      def self.fetch_agents_data(affiliated_agents_ids)
+        return [] if affiliated_agents_ids.empty?
+
+        agent_ids = affiliated_agents_ids.map(&:to_s).uniq
+
+        q = Goo.sparql_query_client
+          .select(:id, :name, :acronym, :agentType)
+          .distinct
+          .from(LinkedData::Models::Agent.uri_type)
+          .where(
+            [:id, LinkedData::Models::Agent.attribute_uri(:name), :name],
+            [:id, LinkedData::Models::Agent.attribute_uri(:agentType), :agentType]
+          )
+          .optional([:id, LinkedData::Models::Agent.attribute_uri(:acronym), :acronym])
+          .values(:id, *agent_ids.map { |uri| RDF::URI(uri.to_s) })
+
+        q.solutions.map do |agent|
+          LinkedData::Models::Agent.read_only(
+            id: agent[:id].to_s,
+            name: agent[:name].to_s,
+            acronym: agent[:acronym].to_s,
+            agentType: agent[:agentType].to_s,
+            usages: nil
+          )
+        end
+      end
     end
   end
 end

From 6b2e42ddfa0dc7bd05f17bb320811b915909e30a Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 18 Jun 2025 15:11:56 +0200
Subject: [PATCH 49/66] Change contact to support list of agents

---
 lib/ontologies_linked_data/models/project.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index f8ec0e8b..1955ced5 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -43,7 +43,7 @@ def self.project_sources
       attribute :keywords, enforce: [:list],
                 namespace: :schema, property: :keywords
                 
-      attribute :contact, enforce: [:Agent],
+      attribute :contact, enforce: [:Agent, :list],
                 namespace: :schema, property: :contactPoint
                 
       attribute :organization, enforce: [:Agent],

From 18bd649ddae0574d9323848c8950f041f14efa3f Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 18 Jun 2025 15:12:48 +0200
Subject: [PATCH 50/66] Make source not required

---
 lib/ontologies_linked_data/models/project.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index 1955ced5..dfa15ed3 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -36,7 +36,7 @@ def self.project_sources
       attribute :ontologyUsed, enforce: [:ontology, :list, :existence],
                 namespace: :metadata, property: :ontologyUsed
                 
-      attribute :source, enforce: [:existence], enforcedValues: lambda { self.project_sources },
+      attribute :source, enforcedValues: lambda { self.project_sources },
                 namespace: :schema, property: :isBasedOn
       
       # Optional attributes

From 1df551aeab15c9ea1440841253b6287e577d08e3 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 18 Jun 2025 15:14:31 +0200
Subject: [PATCH 51/66] Make keywords required

---
 lib/ontologies_linked_data/models/project.rb | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index dfa15ed3..308354aa 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -38,11 +38,11 @@ def self.project_sources
                 
       attribute :source, enforcedValues: lambda { self.project_sources },
                 namespace: :schema, property: :isBasedOn
+
+      attribute :keywords, enforce: [:list, :existence],
+                namespace: :schema, property: :keywords
       
       # Optional attributes
-      attribute :keywords, enforce: [:list],
-                namespace: :schema, property: :keywords
-                
       attribute :contact, enforce: [:Agent, :list],
                 namespace: :schema, property: :contactPoint
                 

From db659ad423d05f6b0c391870558b9c9bd0eee0da Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Fri, 20 Jun 2025 09:51:15 +0200
Subject: [PATCH 52/66] Change project names mapping in ANR

---
 lib/ontologies_linked_data/config/config.rb | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index cd46f04c..d166ae6e 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -137,13 +137,12 @@ def config(&block)
           description_fallbacks: ['action_nom_long', 'description'],
           field_mappings: {
             acronym: 'acronyme',
-            name: 'action_nom',
+            name: 'acronyme',
             description: 'resume',
             homepage: 'lien',
             grant_number: 'eotp_projet',
             start_date: 'date_debut_projet',
             end_date: 'date_fin',
-            region: 'region_du_projet',
             year: 'annee_de_contractualisation'
           },
           funder:"https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"
@@ -158,13 +157,12 @@ def config(&block)
           description_fallbacks: ['objectifs', 'abstract'],
           field_mappings: {
             acronym: 'acronyme_projet',
-            name: 'intitule_complet_du_comite',
+            name: 'acronyme_projet',
             description: nil,
             homepage: 'lien',
             grant_number: 'code_projet_anr',
             start_date: nil,
             end_date: nil,
-            region: 'libelle_de_region_tutelle_hebergeante',
             year: 'edition'
           },
           funder:"https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"

From 86e41025fc2fb4c5ac9c8060bd4479d0b6348dd8 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Fri, 20 Jun 2025 10:10:35 +0200
Subject: [PATCH 53/66] Make configuration in a JSON separate file

---
 config/projects-connectors.json             | 61 +++++++++++++++++
 lib/ontologies_linked_data/config/config.rb | 75 ++++-----------------
 2 files changed, 74 insertions(+), 62 deletions(-)
 create mode 100644 config/projects-connectors.json

diff --git a/config/projects-connectors.json b/config/projects-connectors.json
new file mode 100644
index 00000000..35851e0e
--- /dev/null
+++ b/config/projects-connectors.json
@@ -0,0 +1,61 @@
+{
+  "available_sources": {
+    "ANR_FRANCE2030": "Connectors::AnrConnector",
+    "ANR_AAPG": "Connectors::AnrConnector",
+    "CORDIS": "Connectors::CordisConnector"
+  },
+  "configs": {
+    "CORDIS": {
+      "base_url": "https://cordis.europa.eu/project/id",
+      "search_url": "https://cordis.europa.eu/search",
+      "source": "CORDIS",
+      "project_type": "FundedProject",
+      "organization_xpath": ".//organization[@type='coordinator']",
+      "organization_name_element": "legalName",
+      "organization_url_element": "address/url",
+      "start_date_field": "startDate",
+      "end_date_field": "endDate",
+      "keyword_field": "keywords",
+      "grant_number": "id",
+      "funder": "https://datastage.earthportal.eu/Agents/50112440-0633-013e-05ab-020000e64a65"
+    },
+    "ANR_FRANCE2030": {
+      "base_url": "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/ods_france2030-projets/records",
+      "source": "ANR",
+      "project_type": "FundedProject",
+      "query_format": "LIKE '*%s*'",
+      "search_fields": ["acronym", "grant_number", "name"],
+      "description_fallbacks": ["action_nom_long", "description"],
+      "field_mappings": {
+        "acronym": "acronyme",
+        "name": "acronyme",
+        "description": "resume",
+        "homepage": "lien",
+        "grant_number": "eotp_projet",
+        "start_date": "date_debut_projet",
+        "end_date": "date_fin",
+        "year": "annee_de_contractualisation"
+      },
+      "funder": "https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"
+    },
+    "ANR_AAPG": {
+      "base_url": "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/aapg-projets/records",
+      "source": "ANR",
+      "project_type": "FundedProject",
+      "query_format": "LIKE '*%s*'",
+      "search_fields": ["acronym", "grant_number", "name"],
+      "description_fallbacks": ["objectifs", "abstract"],
+      "field_mappings": {
+        "acronym": "acronyme_projet",
+        "name": "acronyme_projet",
+        "description": null,
+        "homepage": "lien",
+        "grant_number": "code_projet_anr",
+        "start_date": null,
+        "end_date": null,
+        "year": "edition"
+      },
+      "funder": "https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"
+    }
+  }
+}
\ No newline at end of file
diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index d166ae6e..8b62abe2 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -1,5 +1,7 @@
 require 'goo'
 require 'ostruct'
+require 'json'
+
 
 module LinkedData
   extend self
@@ -107,68 +109,17 @@ def config(&block)
 
 
     # Global connector configuration
-    @settings.connectors ||= {
-      available_sources: {
-        'ANR_FRANCE2030' => Connectors::AnrConnector,
-        'ANR_AAPG' => Connectors::AnrConnector,
-        'CORDIS' => Connectors::CordisConnector
-      },
-      configs: {
-        'CORDIS' => {
-          base_url: "https://cordis.europa.eu/project/id",
-          search_url: "https://cordis.europa.eu/search",
-          source: 'CORDIS',
-          project_type: 'FundedProject',
-          organization_xpath: ".//organization[@type='coordinator']",
-          organization_name_element: 'legalName',                    
-          organization_url_element: 'address/url',                 
-          start_date_field: 'startDate',
-          end_date_field: 'endDate',
-          keyword_field: 'keywords',
-          grant_number: 'id',                 
-          funder:"https://datastage.earthportal.eu/Agents/50112440-0633-013e-05ab-020000e64a65"
-        },
-        'ANR_FRANCE2030' => {
-          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/ods_france2030-projets/records",
-          source: 'ANR',
-          project_type: 'FundedProject',
-          query_format: "LIKE '*%s*'", 
-          search_fields: [:acronym, :grant_number, :name],
-          description_fallbacks: ['action_nom_long', 'description'],
-          field_mappings: {
-            acronym: 'acronyme',
-            name: 'acronyme',
-            description: 'resume',
-            homepage: 'lien',
-            grant_number: 'eotp_projet',
-            start_date: 'date_debut_projet',
-            end_date: 'date_fin',
-            year: 'annee_de_contractualisation'
-          },
-          funder:"https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"
-          
-        },
-        'ANR_AAPG' => {
-          base_url: "https://dataanr.opendatasoft.com/api/explore/v2.1/catalog/datasets/aapg-projets/records",
-          source: 'ANR',
-          project_type: 'FundedProject',
-          query_format: "LIKE '*%s*'", 
-          search_fields: [:acronym, :grant_number, :name],
-          description_fallbacks: ['objectifs', 'abstract'],
-          field_mappings: {
-            acronym: 'acronyme_projet',
-            name: 'acronyme_projet',
-            description: nil,
-            homepage: 'lien',
-            grant_number: 'code_projet_anr',
-            start_date: nil,
-            end_date: nil,
-            year: 'edition'
-          },
-          funder:"https://datastage.earthportal.eu/Agents/32b6ddb0-0633-013e-05ab-020000e64a65"
-        }
-      }
-    }
+    connectors_json_path = File.expand_path('/config/projects-connectors.json', __dir__)
+    if File.exist?(connectors_json_path)
+      connectors_data = JSON.parse(File.read(connectors_json_path))
+      if connectors_data["available_sources"]
+        connectors_data["available_sources"].each do |k, v|
+          connectors_data["available_sources"][k] = Object.const_get(v)
+        end
+      end
+      @settings.connectors = connectors_data
+    end
+    
 
     # Override defaults
     yield @settings, overide_connect_goo if block_given?

From eb4b482e9e973b1ff0dfad3b40f5ace74134fa94 Mon Sep 17 00:00:00 2001
From: MUH <58882014+muhammedBkf@users.noreply.github.com>
Date: Wed, 25 Jun 2025 17:25:27 +0200
Subject: [PATCH 54/66] Remove `groups` from agents serialized attributes 
 (#216)

* remove groups from agents serialized attributes

* don't calculate ontologies relates  attributes if agents have no usages

* remove `klass` attribute from related and affiliated agents
---
 .../models/agents/agent.rb                    | 85 +++++++++++--------
 1 file changed, 48 insertions(+), 37 deletions(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 48fea4c9..10a0ab46 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -67,12 +67,16 @@ def usages(force_update: false)
       end
 
       def self.load_agents_keywords(agent)
-        q = Goo.sparql_query_client.select(:keywords).distinct.from(LinkedData::Models::OntologySubmission.uri_type).where([:id, :property, :agent], [:id, LinkedData::Models::OntologySubmission.attribute_uri(:keywords), :keywords])
-        q = q.filter("?agent = <#{agent.id}>")
-        q = q.values(:id,  *agent.usages.keys.map { |uri| RDF::URI(uri.to_s)})
+        if agent.usages.empty?
+          keywords = []
+        else
+          q = Goo.sparql_query_client.select(:keywords).distinct.from(LinkedData::Models::OntologySubmission.uri_type).where([:id, :property, :agent], [:id, LinkedData::Models::OntologySubmission.attribute_uri(:keywords), :keywords])
+          q = q.filter("?agent = <#{agent.id}>")
+          q = q.values(:id,  *agent.usages.keys.map { |uri| RDF::URI(uri.to_s)})
 
 
-        keywords = q.solutions.map { |solution| solution[:keywords].to_s }
+          keywords = q.solutions.map { |solution| solution[:keywords].to_s }
+        end
         agent.instance_variable_set("@keywords", keywords)
         agent.loaded_attributes.add(:keywords)
       end
@@ -80,44 +84,44 @@ def keywords(force_update: false)
         self.class.load_agents_keywords(self) if  !instance_variable_defined?("@keywords")  || force_update
         @keywords
       end
-
-      def self.load_agents_categories_groups(agent)
-        q = Goo.sparql_query_client.select(:groups, :categories).distinct.from(LinkedData::Models::Ontology.uri_type)
-        q = q.optional([:id, LinkedData::Models::Ontology.attribute_uri(:group), :groups])
-        q = q.optional([:id, LinkedData::Models::Ontology.attribute_uri(:hasDomain), :categories])
-        # Strip trailing '/submissions/<id>' from URIs
-        uris = agent.usages.keys.map do |uri|
-          cleaned_uri = uri.to_s.sub(/\/submissions\/\d+$/, "")
-          RDF::URI(cleaned_uri)
-        end
-        q = q.values(:id, *uris)
-        
-        [:groups, :categories].each do |attr|
-          values = q.solutions.map { |solution| solution[attr] }.compact.uniq.reject(&:empty?)
-          agent.instance_variable_set("@#{attr}", values)
-          agent.loaded_attributes.add(attr)
+      
+      def self.load_agents_categories(agent)
+        if agent.usages.empty?
+          categories = []
+        else
+          uris = agent.class.strip_submission_id_from_uris(agent.usages.keys)
+                    
+          q = Goo.sparql_query_client.select(:categories).distinct.from(LinkedData::Models::Ontology.uri_type)
+          q = q.optional([:id, LinkedData::Models::Ontology.attribute_uri(:hasDomain), :categories])
+          q = q.values(:id, *uris)
+          
+          categories = q.solutions.map { |solution| solution[:categories] || solution["categories"] }.compact.uniq.reject(&:empty?)
         end
-      end 
+        agent.instance_variable_set("@categories", categories)
+        agent.loaded_attributes.add("categories")
+      end
+
       def categories
-        self.class.load_agents_categories_groups(self) if !instance_variable_defined?("@categories")  
+        self.class.load_agents_categories(self)
         @categories
       end
-      def groups
-        self.class.load_agents_categories_groups(self) if !instance_variable_defined?("@groups")  
-        @groups
-      end
-
 
       def self.load_related_agents(agent)
-        q = Goo.sparql_query_client.select(:id, :agent).distinct.from(LinkedData::Models::OntologySubmission.uri_type).where([:id, :property, :agent])
-        q = q.filter(OntologySubmission.agents_attr_uris.map{|attr| "?property = <#{attr}>"}.join(' || '))
-        q = q.values(:id,  *agent.usages.keys.map { |uri| RDF::URI(uri.to_s)})
-        relatedAgentsIds = q.each_solution.group_by{|x| x[:agent].to_s}
-                            .reject { |agent_id, _| agent_id == agent.id.to_s }
-                            .transform_values { |solutions| solutions.map { |s| s[:id] } }
-        # map the previously fetched usages
-        relatedAgents = self.fetch_agents_data(relatedAgentsIds.keys).each { |agent| agent.usages = relatedAgentsIds[agent.id.to_s].map(&:to_s).uniq }
-        
+        if agent.usages.empty?
+          relatedAgents = []
+        else
+          q = Goo.sparql_query_client.select(:id, :agent).distinct.from(LinkedData::Models::OntologySubmission.uri_type).where([:id, :property, :agent])
+          q = q.filter(OntologySubmission.agents_attr_uris.map{|attr| "?property = <#{attr}>"}.join(' || '))
+          q = q.values(:id,  *agent.usages.keys.map { |uri| RDF::URI(uri.to_s)})
+          relatedAgentsIds = q.each_solution.group_by{|x| x[:agent].to_s}
+                              .reject { |agent_id, _| agent_id == agent.id.to_s }
+                              .transform_values { |solutions| solutions.map { |s| s[:id] } }
+          # map the previously fetched usages
+          relatedAgents = self.fetch_agents_data(relatedAgentsIds.keys)
+                              .reject { |ag| ag.id == agent.id }
+                              .each { |agent| agent.usages = relatedAgentsIds[agent.id.to_s].map(&:to_s).uniq }
+                              .map { |agent| agent.to_h.reject { |k, _| [:klass, :aggregates, :unmapped].include?(k) }}
+        end
         agent.instance_variable_set("@relatedAgents", relatedAgents)
         agent.loaded_attributes.add(:relatedAgents)
       end     
@@ -134,7 +138,7 @@ def self.load_affiliated_agents(agent)
         q = q.values(:agent,  *agent.id)
         
         affiliatedAgentsIds = q.solutions.map { |solution| solution[:id].to_s }.uniq
-        affiliatedAgents = self.fetch_agents_data(affiliatedAgentsIds) 
+        affiliatedAgents = self.fetch_agents_data(affiliatedAgentsIds).map { |agent| agent.to_h.reject { |k, _| [:klass, :aggregates, :unmapped].include?(k) }} 
 
         
         agent.instance_variable_set("@affiliatedAgents", affiliatedAgents)
@@ -199,6 +203,13 @@ def self.fetch_agents_data(affiliated_agents_ids)
           )
         end
       end
+
+      def self.strip_submission_id_from_uris(uris)
+        uris.map do |uri|
+          cleaned_uri = uri.to_s.sub(%r{/submissions/\d+$}, '')
+          RDF::URI(cleaned_uri)
+        end
+      end
     end
   end
 end

From abcb92637a11749f335e8a58ba735b538abf7dec Mon Sep 17 00:00:00 2001
From: AmineBKF <boukerfa.ma@gmail.com>
Date: Thu, 26 Jun 2025 11:00:48 +0200
Subject: [PATCH 55/66] add subjects loading during agent serialization

---
 .../models/agents/agent.rb                    | 25 +++++++++++++++++--
 1 file changed, 23 insertions(+), 2 deletions(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 10a0ab46..75ff2195 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -17,10 +17,10 @@ class Agent < LinkedData::Models::Base
       attribute :affiliations, enforce: %i[Agent list is_organization], namespace: :org, property: :memberOf
       attribute :creator, type: :user, enforce: [:existence]
       embed :identifiers, :affiliations
-      serialize_methods :usages, :keywords, :groups, :categories, :relatedAgents, :affiliatedAgents
+      serialize_methods :usages, :keywords, :groups, :categories, :subjects, :relatedAgents, :affiliatedAgents
       embed_values affiliations: [:name, :agentType, :homepage, :acronym, :email, :identifiers]
 
-      prevent_serialize_when_nested :usages, :affiliations, :keywords, :groups, :categories, :relatedAgents, :affiliatedAgents
+      prevent_serialize_when_nested :usages, :affiliations, :keywords, :groups, :categories, :subjects, :relatedAgents, :affiliatedAgents
           
       write_access :creator
       access_control_load :creator
@@ -106,6 +106,27 @@ def categories
         @categories
       end
 
+      def self.load_agents_subjects(agent)
+        if agent.usages.empty?
+          subjects = []
+        else
+          uris = agent.class.strip_submission_id_from_uris(agent.usages.keys)
+                    
+          q = Goo.sparql_query_client.select(:subjects).distinct.from(LinkedData::Models::OntologySubmission.uri_type)
+          q = q.optional([:id, LinkedData::Models::OntologySubmission.attribute_uri(:hasDomain), :subjects])
+          q = q.values(:id, *uris)
+          
+          subjects = q.solutions.map { |solution| solution[:subjects] || solution["subjects"] }.compact.uniq.reject(&:empty?)
+        end
+        agent.instance_variable_set("@subjects", subjects)
+        agent.loaded_attributes.add("subjects")
+      end
+
+      def subjects
+        self.class.load_agents_subjects(self)
+        @subjects
+      end
+
       def self.load_related_agents(agent)
         if agent.usages.empty?
           relatedAgents = []

From 8ce21d045c6fe829c6893c472e2293233d65d402 Mon Sep 17 00:00:00 2001
From: AmineBKF <boukerfa.ma@gmail.com>
Date: Fri, 27 Jun 2025 10:34:16 +0200
Subject: [PATCH 56/66] add agents subjects attribute

---
 lib/ontologies_linked_data/models/agents/agent.rb | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/lib/ontologies_linked_data/models/agents/agent.rb b/lib/ontologies_linked_data/models/agents/agent.rb
index 75ff2195..f9848e0b 100644
--- a/lib/ontologies_linked_data/models/agents/agent.rb
+++ b/lib/ontologies_linked_data/models/agents/agent.rb
@@ -110,13 +110,17 @@ def self.load_agents_subjects(agent)
         if agent.usages.empty?
           subjects = []
         else
-          uris = agent.class.strip_submission_id_from_uris(agent.usages.keys)
-                    
+          uris = agent.usages.keys
           q = Goo.sparql_query_client.select(:subjects).distinct.from(LinkedData::Models::OntologySubmission.uri_type)
           q = q.optional([:id, LinkedData::Models::OntologySubmission.attribute_uri(:hasDomain), :subjects])
           q = q.values(:id, *uris)
           
-          subjects = q.solutions.map { |solution| solution[:subjects] || solution["subjects"] }.compact.uniq.reject(&:empty?)
+          subjects = q.solutions
+             .map { |solution| solution[:subjects] || solution["subjects"] }
+             .compact
+             .map(&:to_s)
+             .reject(&:empty?)
+             .uniq
         end
         agent.instance_variable_set("@subjects", subjects)
         agent.loaded_attributes.add("subjects")

From 2014407bf814174693141a8710526c4e9035f0d6 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 27 Jun 2025 11:19:58 +0200
Subject: [PATCH 57/66] Hotfix: embed agents attributes in catalog

---
 .../models/mod/semantic_artefact_catalog.rb                     | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
index c963784d..dbc63c71 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact_catalog.rb
@@ -175,6 +175,8 @@ class SemanticArtefactCatalog < LinkedData::Models::ModBase
                               :publisher, :subject, :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL,
                               :numberOfArtefacts, :federated_portals, :fundedBy
 
+            embed :rightsHolder, :contactPoint, :creator, :contributor, :curatedBy, :translator, :publisher, :endorsedBy
+
             def self.type_uri
                 namespace[model_name].to_s
             end

From 6a8e779d922e0df97f5f0efe07e8fcd28ce634c3 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 27 Jun 2025 12:04:54 +0200
Subject: [PATCH 58/66] fix: test artefact catalog

---
 test/models/mod/test_artefact_catalog.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/models/mod/test_artefact_catalog.rb b/test/models/mod/test_artefact_catalog.rb
index 27a2beed..aff493d1 100644
--- a/test/models/mod/test_artefact_catalog.rb
+++ b/test/models/mod/test_artefact_catalog.rb
@@ -72,6 +72,6 @@ def test_bring_all_attrs
     sac = LinkedData::Models::SemanticArtefactCatalog.all.first
     all_attrs_to_bring = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:all])
     sac.bring(*all_attrs_to_bring)
-    assert_equal all_attrs_to_bring.sort, (sac.loaded_attributes.to_a + [:type]).sort
+    assert_equal (all_attrs_to_bring.flat_map { |e| e.is_a?(Hash) ? e.keys : e }).sort, (sac.loaded_attributes.to_a + [:type]).sort
   end
 end
\ No newline at end of file

From b1100838db9a2841d35a8487de9a0071243f8f20 Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Fri, 27 Jun 2025 15:00:05 +0200
Subject: [PATCH 59/66] fix test test_goo_attrs_to_load catalog

---
 test/models/mod/test_artefact_catalog.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/models/mod/test_artefact_catalog.rb b/test/models/mod/test_artefact_catalog.rb
index aff493d1..c4d59928 100644
--- a/test/models/mod/test_artefact_catalog.rb
+++ b/test/models/mod/test_artefact_catalog.rb
@@ -56,7 +56,7 @@ def test_goo_attrs_to_load
       default_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([])
       assert_equal [:acronym, :title, :color, :description, :logo, :identifier, :status, :language, :type, :accessRights, :license, :rightsHolder, 
       :landingPage, :keyword, :bibliographicCitation, :created, :modified, :contactPoint, :creator, :contributor, :publisher, :subject,
-      :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL, :numberOfArtefacts, :federated_portals, :fundedBy], default_attrs
+      :coverage, :createdWith, :accrualMethod, :accrualPeriodicity, :wasGeneratedBy, :accessURL, :numberOfArtefacts, :federated_portals, :fundedBy].sort, (default_attrs.flat_map { |e| e.is_a?(Hash) ? e.keys : e }).sort
 
       specified_attrs = LinkedData::Models::SemanticArtefactCatalog.goo_attrs_to_load([:acronym, :title, :keyword, :featureList])
       assert_equal [:acronym, :title, :keyword, :featureList], specified_attrs

From 505fbb9f2d9ec23834cfcd5ffd2ba1249b2b254e Mon Sep 17 00:00:00 2001
From: Imad Bourouche <ji_bourouche@esi.dz>
Date: Wed, 2 Jul 2025 17:46:33 +0200
Subject: [PATCH 60/66] QA fixes MOD-API (#218)

* update artefacts links

* address QA changes for distributions
---
 .../semantic_artefact/attribute_fetcher.rb    | 16 +++++++-------
 .../models/mod/semantic_artefact.rb           | 22 +++++++++----------
 2 files changed, 18 insertions(+), 20 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
index 1198b565..84b0b3c4 100644
--- a/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
+++ b/lib/ontologies_linked_data/concerns/semantic_artefact/attribute_fetcher.rb
@@ -43,21 +43,21 @@ def fetch_from_ontology(attributes)
             
                 def fetch_from_submission(attributes)
                     return if attributes.empty?
-                    @latest ||= defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
-                    return unless @latest
-                    @latest.bring(*attributes.values)
+                    @submission_to_fetch_from ||= defined?(@submission) ? @submission : defined?(@ontology) ? @ontology.latest_submission(status: :ready) : nil
+                    return unless @submission_to_fetch_from
+                    @submission_to_fetch_from.bring(*attributes.values)
                     attributes.each do |attr, mapped_attr|
-                        self.send("#{attr}=", @latest.send(mapped_attr)) if @latest.respond_to?(mapped_attr)
+                        self.send("#{attr}=", @submission_to_fetch_from.send(mapped_attr)) if @submission_to_fetch_from.respond_to?(mapped_attr)
                     end
                 end
             
                 def fetch_from_metrics(attributes)
                     return if attributes.empty?
-                    @latest ||= defined?(@ontology) ? @ontology.latest_submission(status: :ready) : @submission
-                    return unless @latest
-                    @latest.bring(metrics: [attributes.values])
+                    @submission_to_fetch_from ||= defined?(@submission) ? @submission : defined?(@ontology) ? @ontology.latest_submission(status: :ready) : nil
+                    return unless @submission_to_fetch_from
+                    @submission_to_fetch_from.bring(metrics: [attributes.values])
                     attributes.each do |attr, mapped_attr|
-                        metric_value = @latest.metrics&.respond_to?(mapped_attr) ? @latest.metrics.send(mapped_attr) || 0 : 0
+                        metric_value = @submission_to_fetch_from.metrics&.respond_to?(mapped_attr) ? @submission_to_fetch_from.metrics.send(mapped_attr) || 0 : 0
                         self.send("#{attr}=", metric_value)
                     end
                 end
diff --git a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
index 62ee88f7..f822828e 100644
--- a/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
+++ b/lib/ontologies_linked_data/models/mod/semantic_artefact.rb
@@ -119,16 +119,16 @@ class SemanticArtefact < LinkedData::Models::ModBase
             attribute :ontology, type: :ontology, enforce: [:existence]
             
             links_load :acronym
-            link_to LinkedData::Hypermedia::Link.new("distributions", lambda {|s| "artefacts/#{s.acronym}/distributions"}, LinkedData::Models::SemanticArtefactDistribution.type_uri),
-                    LinkedData::Hypermedia::Link.new("record", lambda {|s| "artefacts/#{s.acronym}/record"}, LinkedData::Models::SemanticArtefactCatalogRecord.type_uri),
-                    LinkedData::Hypermedia::Link.new("resources", lambda {|s| "artefacts/#{s.acronym}/resources"}),
-                    LinkedData::Hypermedia::Link.new("classes", lambda {|s| "artefacts/#{s.acronym}/classes"}, LinkedData::Models::Class.uri_type),
-                    LinkedData::Hypermedia::Link.new("concepts", lambda {|s| "artefacts/#{s.acronym}/concepts"}, LinkedData::Models::Class.uri_type),
-                    LinkedData::Hypermedia::Link.new("properties", lambda {|s| "artefacts/#{s.acronym}/properties"}, "#{Goo.namespaces[:metadata].to_s}Property"),
-                    LinkedData::Hypermedia::Link.new("individuals", lambda {|s| "artefacts/#{s.acronym}/classes/roots"}, LinkedData::Models::Class.uri_type),
-                    LinkedData::Hypermedia::Link.new("schemes", lambda {|s| "artefacts/#{s.acronym}/schemes"}, LinkedData::Models::SKOS::Scheme.uri_type),
-                    LinkedData::Hypermedia::Link.new("collection", lambda {|s| "artefacts/#{s.acronym}/collections"}, LinkedData::Models::SKOS::Collection.uri_type),
-                    LinkedData::Hypermedia::Link.new("labels", lambda {|s| "artefacts/#{s.acronym}/labels"}, LinkedData::Models::SKOS::Label.uri_type)
+            link_to LinkedData::Hypermedia::Link.new("distributions", lambda {|s| "mod-api/artefacts/#{s.acronym}/distributions"}, LinkedData::Models::SemanticArtefactDistribution.type_uri),
+                    LinkedData::Hypermedia::Link.new("record", lambda {|s| "mod-api/artefacts/#{s.acronym}/record"}, LinkedData::Models::SemanticArtefactCatalogRecord.type_uri),
+                    LinkedData::Hypermedia::Link.new("resources", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources"}),
+                    LinkedData::Hypermedia::Link.new("classes", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources/classes"}, LinkedData::Models::Class.uri_type),
+                    LinkedData::Hypermedia::Link.new("concepts", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources/concepts"}, LinkedData::Models::Class.uri_type),
+                    LinkedData::Hypermedia::Link.new("properties", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources/properties"}, "#{Goo.namespaces[:metadata].to_s}Property"),
+                    LinkedData::Hypermedia::Link.new("individuals", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources/individuals"}, LinkedData::Models::Class.uri_type),
+                    LinkedData::Hypermedia::Link.new("schemes", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources/schemes"}, LinkedData::Models::SKOS::Scheme.uri_type),
+                    LinkedData::Hypermedia::Link.new("collection", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources/collections"}, LinkedData::Models::SKOS::Collection.uri_type),
+                    LinkedData::Hypermedia::Link.new("labels", lambda {|s| "mod-api/artefacts/#{s.acronym}/resources/labels"}, LinkedData::Models::SKOS::Label.uri_type)
 
             # Access control
             read_restriction_based_on ->(artefct) { artefct.ontology }
@@ -185,11 +185,9 @@ def all_distributions(attributes, page, pagesize)
                 submissions_count =  OntologySubmission.where.filter(filter_by_acronym).count
                 submissions_page = OntologySubmission.where.include(:distributionId)
                                                     .filter(filter_by_acronym)
-                                                    .order_by(distributionId: :desc)
                                                     .page(page, pagesize)
                                                     .page_count_set(submissions_count)
                                                     .all
-
                 all_distributions = submissions_page.map do |submission|
                     SemanticArtefactDistribution.new(submission).tap do |dist|
                         dist.bring(*attributes) if attributes

From faf2d803dc006bf5d9fe5ce8cd4347d3cc23807a Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Thu, 3 Jul 2025 11:11:27 +0200
Subject: [PATCH 61/66] Add acronym validations

---
 lib/ontologies_linked_data/models/project.rb | 37 +++++++++++++++++---
 1 file changed, 32 insertions(+), 5 deletions(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index 308354aa..6dbf61e7 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -3,13 +3,9 @@ module Models
     class Project < LinkedData::Models::Base
       model :project, :name_with => :acronym,
             rdf_type: lambda { |*x| RDF::URI.new('https://schema.org/ResearchProject') }
-      
-      def self.project_sources
-        LinkedData.settings.connectors[:available_sources].keys
-      end
 
       # Required attributes
-      attribute :acronym, enforce: [:unique, :existence], 
+      attribute :acronym, enforce: [:unique, :existence, lambda { |inst,attr| validate_acronym(inst,attr) }], 
                 namespace: :metadata, property: :acronym
                 
       attribute :creator, enforce: [:existence, :user, :list], 
@@ -72,6 +68,37 @@ def self.project_sources
 
       write_access :creator
       access_control_load :creator
+
+      def self.validate_acronym(inst, attr)
+        inst.bring(attr) if inst.bring?(attr)
+        acronym = inst.send(attr)
+
+        return [] if acronym.nil?
+
+        errors = []
+
+        if acronym.match(/\A[^a-z^A-Z]{1}/)
+          errors << [:start_with_letter, "`acronym` must start with a letter"]
+        end
+
+        if acronym.match(/[a-z]/)
+          errors << [:capital_letters, "`acronym` must be all capital letters"]
+        end
+
+        if acronym.match(/[^-_0-9a-zA-Z]/)
+          errors << [:special_characters, "`acronym` must only contain the following characters: -, _, letters, and numbers"]
+        end
+
+        if acronym.match(/.{17,}/)
+          errors << [:length, "`acronym` must be sixteen characters or less"]
+        end
+
+        return errors.flatten
+      end
+
+      def self.project_sources
+        LinkedData.settings.connectors[:available_sources].keys
+      end
     end
   end
 end
\ No newline at end of file

From 1faacdc027c87a502029ee8e10d07297f9623757 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Thu, 3 Jul 2025 11:18:40 +0200
Subject: [PATCH 62/66] Transform acronym to uppercase and replace spaces with
 hyphens

---
 .../concerns/connectors/anr_connector.rb                    | 5 ++++-
 .../concerns/connectors/cordis_connector.rb                 | 6 ++++--
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
index 2a540ef6..b3b02fce 100644
--- a/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/anr_connector.rb
@@ -62,7 +62,10 @@ def build_project_data(result, mapping)
       
       project.source = connector_config[:source]
       project.type = connector_config[:project_type] || 'FundedProject'
-      project.acronym = result[mapping[:acronym]]
+      raw_acronym = result[mapping[:acronym]]
+      if raw_acronym
+        project.acronym = raw_acronym.upcase.gsub(' ', '-')
+      end
       project.name = result[mapping[:name]]
       project.description = get_description(result, mapping)
       project.homePage = result[mapping[:homepage]]
diff --git a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
index fd0bf1ad..c0f6805d 100644
--- a/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
+++ b/lib/ontologies_linked_data/concerns/connectors/cordis_connector.rb
@@ -40,7 +40,10 @@ def map_single_project(xml_project)
       
       project.source = connector_config[:source]
       project.type = connector_config[:project_type]
-      project.acronym = xml_project.elements['acronym']&.text
+      raw_acronym = xml_project.elements['acronym']&.text
+      if raw_acronym
+        project.acronym = raw_acronym.upcase.gsub(' ', '-')
+      end
       project.name = xml_project.elements['title']&.text
       project.description = xml_project.elements['objective']&.text
       
@@ -58,7 +61,6 @@ def map_single_project(xml_project)
       project.created = DateTime.now
       project.updated = DateTime.now
       
-      # Rest of the method remains unchanged
       start_date_field = connector_config[:start_date_field] 
       end_date_field = connector_config[:end_date_field]
       

From d8e8ccdcbc6dba400673f801f0d5522a9865e1c9 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Thu, 3 Jul 2025 12:40:29 +0200
Subject: [PATCH 63/66] Fix config moving to a json file

---
 lib/ontologies_linked_data/config/config.rb | 28 +++++++++++++++------
 1 file changed, 20 insertions(+), 8 deletions(-)

diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index 8b62abe2..38b253a8 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -107,19 +107,31 @@ def config(&block)
     @settings.indexing_num_threads          ||= 1
 
 
+    require 'active_support/core_ext/hash/indifferent_access'
 
-    # Global connector configuration
-    connectors_json_path = File.expand_path('/config/projects-connectors.json', __dir__)
+    connectors_json_path = File.join(File.dirname(__FILE__), '..', '..', '..', 'config', 'projects-connectors.json')
     if File.exist?(connectors_json_path)
-      connectors_data = JSON.parse(File.read(connectors_json_path))
-      if connectors_data["available_sources"]
-        connectors_data["available_sources"].each do |k, v|
-          connectors_data["available_sources"][k] = Object.const_get(v)
+      begin
+        connectors_data = JSON.parse(File.read(connectors_json_path)).with_indifferent_access
+        if connectors_data[:available_sources]
+          connectors_data[:available_sources].each do |k, v|
+            connectors_data[:available_sources][k] = Object.const_get(v)
+          end
         end
+        if connectors_data[:configs]
+          connectors_data[:configs].each do |_, config|
+            config[:search_fields]&.map!(&:to_sym)
+          end
+        end
+        @settings.connectors = connectors_data
+      rescue => e
+        @settings.connectors = { available_sources: {}, configs: {} }.with_indifferent_access
       end
-      @settings.connectors = connectors_data
+    else
+      @settings.connectors = { available_sources: {}, configs: {} }.with_indifferent_access
     end
-    
+
+
 
     # Override defaults
     yield @settings, overide_connect_goo if block_given?

From 2d6207c93c78fd516bc868d5f459f90d51cbe78e Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Thu, 3 Jul 2025 15:01:35 +0200
Subject: [PATCH 64/66] Add creator attribute ro serialize_default

---
 lib/ontologies_linked_data/models/project.rb | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index 6dbf61e7..fdcd1f10 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -64,7 +64,7 @@ class Project < LinkedData::Models::Base
       serialize_default :acronym, :type, :name, :homePage, :description, 
                       :ontologyUsed, :created, :updated, :keywords,
                       :contact, :organization, :grant_number, :start_date, 
-                      :end_date, :funder, :logo, :source
+                      :end_date, :funder, :logo, :source, :creator
 
       write_access :creator
       access_control_load :creator

From b0ab9dc250fdfbdee220ee5d801741a9338bceff Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 16 Jul 2025 15:57:45 +0200
Subject: [PATCH 65/66] Update mappings

---
 lib/ontologies_linked_data/config/config.rb  |  1 +
 lib/ontologies_linked_data/models/project.rb | 28 ++++++++++----------
 2 files changed, 15 insertions(+), 14 deletions(-)

diff --git a/lib/ontologies_linked_data/config/config.rb b/lib/ontologies_linked_data/config/config.rb
index 38b253a8..c4922359 100644
--- a/lib/ontologies_linked_data/config/config.rb
+++ b/lib/ontologies_linked_data/config/config.rb
@@ -229,6 +229,7 @@ def goo_namespaces
       conf.add_namespace(:skosxl, RDF::Vocabulary.new("http://www.w3.org/2008/05/skos-xl#"))
       conf.add_namespace(:dcterms, RDF::Vocabulary.new("http://purl.org/dc/terms/"))
       conf.add_namespace(:uneskos, RDF::Vocabulary.new("http://purl.org/umu/uneskos#"))
+      conf.add_namespace(:frapo, RDF::Vocabulary.new("http://purl.org/cerif/frapo/"))
 
 
       conf.id_prefix = DEFAULT_PREFIX
diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index fdcd1f10..d27a4cbd 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -6,28 +6,28 @@ class Project < LinkedData::Models::Base
 
       # Required attributes
       attribute :acronym, enforce: [:unique, :existence, lambda { |inst,attr| validate_acronym(inst,attr) }], 
-                namespace: :metadata, property: :acronym
+                namespace: :frapo, property: :hasAcronym
                 
       attribute :creator, enforce: [:existence, :user, :list], 
-                namespace: :schema, property: :creator
+                namespace: :foaf, property: :Agent
                 
       attribute :created, enforce: [:date_time], :default => lambda {|x| DateTime.now },
-                namespace: :schema, property: :dateCreated
+                namespace: :dcterms, property: :created
                 
       attribute :updated, enforce: [:date_time], :default => lambda {|x| DateTime.now },
-                namespace: :schema, property: :dateModified
+                namespace: :dcterms, property: :modified
                 
       attribute :type, enforce: [:existence], enforcedValues: %w[FundedProject NonFundedProject],
-                namespace: :metadata, property: :projectType
+                namespace: :foaf, property: :Project
                 
       attribute :name, enforce: [:existence],
-                namespace: :schema, property: :legalName
+                namespace: :foaf, property: :name
                 
       attribute :homePage, enforce: [:uri, :existence],
                 namespace: :foaf, property: :homepage
                 
       attribute :description, enforce: [:existence],
-                namespace: :schema, property: :description
+                namespace: :dc, property: :description
                 
       attribute :ontologyUsed, enforce: [:ontology, :list, :existence],
                 namespace: :metadata, property: :ontologyUsed
@@ -36,29 +36,29 @@ class Project < LinkedData::Models::Base
                 namespace: :schema, property: :isBasedOn
 
       attribute :keywords, enforce: [:list, :existence],
-                namespace: :schema, property: :keywords
+                namespace: :frapo, property: :hasKeyword
       
       # Optional attributes
       attribute :contact, enforce: [:Agent, :list],
                 namespace: :schema, property: :contactPoint
                 
       attribute :organization, enforce: [:Agent],
-                namespace: :org, property: :memberOf
+                namespace: :frapo, property: :isSupportedBy
                 
       attribute :logo, enforce: [:uri],
-                namespace: :schema, property: :logo
+                namespace: :foaf, property: :logo
       
       attribute :grant_number, enforce: [:string],
-                namespace: :schema, property: :identifier
+                namespace: :dcterms, property: :identifier
                 
       attribute :start_date, enforce: [:date_time],
-                namespace: :schema, property: :startDate
+                namespace: :frapo, property: :hasStartDate
                 
       attribute :end_date, enforce: [:date_time],
-                namespace: :schema, property: :endDate
+                namespace: :frapo, property: :hasEndDate
                 
       attribute :funder, enforce: [:Agent],
-                namespace: :schema, property: :funder
+                namespace: :frapo, property: :isFundedBy
 
       embed :contact, :organization, :funder
       serialize_default :acronym, :type, :name, :homePage, :description, 

From 52530624c0cb5d3dddd95809eb919216b8e825e0 Mon Sep 17 00:00:00 2001
From: "h.allem" <h.allem@esi-sba.dz>
Date: Wed, 16 Jul 2025 15:58:24 +0200
Subject: [PATCH 66/66] Validate start date < end date

---
 lib/ontologies_linked_data/models/project.rb | 22 ++++++++++++++++++--
 1 file changed, 20 insertions(+), 2 deletions(-)

diff --git a/lib/ontologies_linked_data/models/project.rb b/lib/ontologies_linked_data/models/project.rb
index d27a4cbd..a1d94608 100644
--- a/lib/ontologies_linked_data/models/project.rb
+++ b/lib/ontologies_linked_data/models/project.rb
@@ -54,8 +54,9 @@ class Project < LinkedData::Models::Base
       attribute :start_date, enforce: [:date_time],
                 namespace: :frapo, property: :hasStartDate
                 
-      attribute :end_date, enforce: [:date_time],
-                namespace: :frapo, property: :hasEndDate
+      attribute :end_date, enforce: [:date_time, lambda { |inst, attr| validate_dates(inst, attr) }],
+          namespace: :frapo, property: :hasEndDate
+
                 
       attribute :funder, enforce: [:Agent],
                 namespace: :frapo, property: :isFundedBy
@@ -96,6 +97,23 @@ def self.validate_acronym(inst, attr)
         return errors.flatten
       end
 
+
+      def self.validate_dates(inst, attr)
+        inst.bring(:start_date) if inst.bring?(:start_date)
+        inst.bring(attr) if inst.bring?(attr)
+        
+        start_date = inst.start_date
+        end_date = inst.send(attr)
+        
+        return [] if start_date.nil? || end_date.nil?
+        
+        if start_date >= end_date
+          return [[:invalid_date_range, "Start date must be before end date"]]
+        end
+        
+        return []
+      end
+
       def self.project_sources
         LinkedData.settings.connectors[:available_sources].keys
       end