Whole Genome Data

[NinaMercedes]

Hi,

Thank you for developing Dcifer, it is an excellent tool! I was wondering if there is any way to use Dcifer on whole genome sequence data to be able to compare IBD between amplicon and WGS data form different timepoints? We have filtered the WGS VCF for the MadHatter amplicon regions.

Thank you,
Nina

[innager]

Hi Nina,

Yes, I think so. Can you extract the relevant information from VCF and format it in the same way (e.g. as in the tutorial example)? Each allele would have their own row

[NinaMercedes]

Many thanks I shall give this a go!