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Description
When I submit an lsf hpc job I get an error because the bsub memory parameter isn't in the form that my system expects. It should get ... "-M 4000" but instead it's getting "-M 4g"
Here is the command that I'm using (default test json) and the error:
$ caper -v
2.2.3
$ echo $INPUT_JSON
https://storage.googleapis.com/encode-pipeline-test-samples/encode-atac-seq-pipeline/ENCSR356KRQ_subsampled.json
$ caper hpc submit atac.wdl -i "${INPUT_JSON}" --singularity --leader-job-name JWT_Leader
2023-04-06 10:12:03,243|caper.hpc|INFO| Running shell command: bsub -W 2880 -M 4g -env all -J CAPER_JWT_Leader /home/jtobias/y3v9bq3x.sh
4g: MEMLIMT value should be a positive integer. Job not submitted.
I've also attached my backend conf file which I recovered from a temp directory.
Please let me know what I should modify to work around this problem.
Many thanks!