Recalculate metrics on the final models

[gemygk]

cc @swarbred

As discussed today, we need to add an option to recalculate the metrics on the final gene models that we generate, similar to what we do with Kallisto (rule minos_kallisto_quant_post_pick for example) and update the final metrics table. This is to analyse the structural changes to the Minos models post Mikado padding.