Struggling with Mikado installation

[marcopessoa]

I am very interested in using Mikado for our genome annotations. I have tried different ways of installing it, such as conda and pip, but none of them work on our servers. Dependencies seem to be incompatible with current recipes, and even with a successful install, the runs lead to Python errors.

I am trying to make Mikado work so that I can also test Minos.

For Mikado, I can run the Docker container, but it also fails to access local files on the host.

Would you happen to have any suggestions for a functional environment for the current release?

Thanks!

[marcopessoa]

I managed to run it with Singularity. I figured out that soft links do not work with it, and all files should be copied to the current directory.

[cschu]

You could probably use the -B /path/to/file option of singularity exec to mount the targets of your softlinks.