AttributeError: 'module' object has no attribute 'marching_cubes'

[qyuan7]

To whom it may concern,

I'm trying to run the tutorial example for JabberDock, however when running the dock.py command I got the following error:

" File "/home/qi/POW_v2/POW.py", line 121, in
data=mode.Data(params)
File "/home/qi/JabberDock/auto_scripts/generate_ensemble.py", line 93, in init
self.J1 = jd.Jabber(params.receptor_map, params.iso_cutoff)
File "jabber.pyx", line 61, in jabber.Jabber.init
AttributeError: 'module' object has no attribute 'marching_cubes'
"
Any help regarding the error would be much appreciated.

Thanks,

Qi

[Zaotaiyang]

To whom it may concern,

I'm trying to run the tutorial example for JabberDock, however when running the dock.py command I got the following error:

" File "/home/qi/POW_v2/POW.py", line 121, in data=mode.Data(params) File "/home/qi/JabberDock/auto_scripts/generate_ensemble.py", line 93, in init self.J1 = jd.Jabber(params.receptor_map, params.iso_cutoff) File "jabber.pyx", line 61, in jabber.Jabber.init AttributeError: 'module' object has no attribute 'marching_cubes' " Any help regarding the error would be much appreciated.

Thanks,

Qi

Hi qyuan7,

I encountered the same issue as you did. Did you manage to resolve it later on? Would you mind sharing the solution if you did? Thank you!

Best regards,
xiao

[qyuan7]

To whom it may concern,
I'm trying to run the tutorial example for JabberDock, however when running the dock.py command I got the following error:
" File "/home/qi/POW_v2/POW.py", line 121, in data=mode.Data(params) File "/home/qi/JabberDock/auto_scripts/generate_ensemble.py", line 93, in init self.J1 = jd.Jabber(params.receptor_map, params.iso_cutoff) File "jabber.pyx", line 61, in jabber.Jabber.init AttributeError: 'module' object has no attribute 'marching_cubes' " Any help regarding the error would be much appreciated.
Thanks,
Qi

Hi qyuan7,

I encountered the same issue as you did. Did you manage to resolve it later on? Would you mind sharing the solution if you did? Thank you!

Best regards, xiao

Hi Xiao,

It's been a while but I remember it was due to the version conflict of skimage. You could either change your version of skimage to the same as Jabberdock used. Or manually correct the code where it calls the function from skimage. Possible useful link:
https://stackoverflow.com/questions/54056565/attributeerror-module-skimage-measure-has-no-attribute-marching-cubes

Hope this helps.

Qi

[Zaotaiyang]

Dear Qi,

Thank you so much for taking the time to provide such a detailed response to my question, along with the helpful link. I sincerely apologize for the delayed reply. After making several attempts to resolve the issue, I was unfortunately unable to achieve success and decided to temporarily set aside the program.

Nevertheless, I truly appreciate your kind assistance.

Wishing you all the best.
Xiao