From 69db73cb6053edf74d3dc8d77fa32ddc160eb115 Mon Sep 17 00:00:00 2001
From: Mirja Granfors <95694095+mirjagranfors@users.noreply.github.com>
Date: Mon, 27 Oct 2025 09:17:05 +0100
Subject: [PATCH 1/3] Update README
Added links to the tutorials for creating custom scatterers.
---
README.md | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/README.md b/README.md
index 00058789..1bf6bbbb 100644
--- a/README.md
+++ b/README.md
@@ -97,6 +97,14 @@ Here you find a series of notebooks that give you an overview of the core featur
Using PyTorch gradients to fit a Gaussian generated by a DeepTrack2 pipeline.
+- DTGS171A **[Creating Custom Scatterers](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171A_custom_scatterers.ipynb)** 
+
+Creating custom scatterers of arbitrary shapes.
+
+- DTGS171B **[Creating Custom Scatterers: Bacteria](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb)**
+
+Creating custom scatterers in the shape of bacteria.
+
# Examples
These are examples of how DeepTrack2 can be used on real datasets:
From 5239127c06c0291d3ec2675af53dc04cf13d4c6b Mon Sep 17 00:00:00 2001
From: Mirja Granfors <95694095+mirjagranfors@users.noreply.github.com>
Date: Mon, 27 Oct 2025 09:20:13 +0100
Subject: [PATCH 2/3] Update README
---
README.md | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/README.md b/README.md
index 1bf6bbbb..c23fcbf3 100644
--- a/README.md
+++ b/README.md
@@ -101,7 +101,7 @@ Here you find a series of notebooks that give you an overview of the core featur
Creating custom scatterers of arbitrary shapes.
-- DTGS171B **[Creating Custom Scatterers: Bacteria](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb)**
+- DTGS171B **[Creating Custom Scatterers: Bacteria](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb)**
Creating custom scatterers in the shape of bacteria.
From ce1bf8f9df70e4e7783d1b33d70d33062a130a3e Mon Sep 17 00:00:00 2001
From: Alex <95913221+Pwhsky@users.noreply.github.com>
Date: Wed, 29 Oct 2025 13:38:30 +0100
Subject: [PATCH 3/3] Update README.md
---
README.md | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/README.md b/README.md
index c23fcbf3..d2c43d67 100644
--- a/README.md
+++ b/README.md
@@ -99,11 +99,11 @@ Here you find a series of notebooks that give you an overview of the core featur
- DTGS171A **[Creating Custom Scatterers](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171A_custom_scatterers.ipynb)**
-Creating custom scatterers of arbitrary shapes.
+ Creating custom scatterers of arbitrary shapes.
- DTGS171B **[Creating Custom Scatterers: Bacteria](https://github.com/DeepTrackAI/DeepTrack2/blob/develop/tutorials/1-getting-started/DTGS171B_custom_scatterers_bacteria.ipynb)**
-Creating custom scatterers in the shape of bacteria.
+ Creating custom scatterers in the shape of bacteria.
# Examples