diff --git a/sv.py b/sv.py index 7d191ef..2c10999 100644 --- a/sv.py +++ b/sv.py @@ -43,9 +43,8 @@ def __init__(self, vcf_record, check_type = True, join_mode = False, output_ids if info_dict["SVTYPE"] == "DEL_ALU" or info_dict["SVTYPE"] == "DEL_LINE1": info_dict["SVTYPE"] = "DEL" elif info_dict["SVTYPE"] == "ALU" or info_dict["SVTYPE"] == "LINE1" or info_dict["SVTYPE"] == "SVA" or \ - info_dict["SVTYPE"] == "DUP" or info_dict["SVTYPE"] == "CNV" or info_dict["SVTYPE"] == "INVDUP" or \ - info_dict["SVTYPE"] == "INV": - info_dict["SVTYPE"] = "INS" + info_dict["SVTYPE"] == "DUP" or info_dict["SVTYPE"] == "CNV" or info_dict["SVTYPE"] == "INVDUP": + info_dict["SVTYPE"] = "INS" elif info_dict["SVTYPE"] == "TRA": info_dict["SVTYPE"] = "BND"