Neuroglobe/pyproject.toml at main · DVDGNM99/Neuroglobe · GitHub

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[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "neuroglobe"
version = "4.0.0"
description = "Advanced 3D Viewer for Allen Brain Atlas Connectivity"
readme = "README.md"
requires-python = ">=3.10"
license = {file = "LICENSE"}
authors = [
  {name = "Dr. David Ganem"}
]
keywords = ["neuroscience", "atlas", "brainrender", "vtk"]

# Common dependencies
dependencies = [
    "numpy>=1.23.5",
    "pandas>=2.3.3",
    "pyyaml>=6.0",
    "customtkinter",
    "jupyter",
    "ipykernel",
    "pytest",
]

[project.optional-dependencies]
# Dependencies for the Mining Pipeline (envs/allensdk.yml)
miner = [
    "allensdk>=2.16.2",
    "tables>=3.9.2",
    "SimpleITK>=2.0.0",
]

# Dependencies for the 3D Viewer (envs/brainglobe_render.yml)
viewer = [
    "brainrender>=2.1.16",
    "vedo>=2025.5.4",
    "brainglobe-atlasapi>=2.1.0",
    "brainglobe-utils>=0.6.3",
    "brainglobe-space>=1.0.3",
    "morphapi",
    "napari>=0.6.6",
    "vtk>=9.2.6",
    "k3d>=2.17.0",
    "matplotlib>=3.5.0",
    "seaborn>=0.13.2",
    "scipy>=1.15.2",
    "rich>=14.2.0",
    "typer>=0.20.0",
    "dearpygui>=1.6.0",
]

[tool.setuptools.packages.find]
where = ["."]
include = ["src*"]

[tool.pytest.ini_options]
minversion = "6.0"
addopts = "-v --tb=short"
testpaths = ["tests"]
python_files = "test_*.py"
log_cli = true
log_cli_level = "INFO"