numsnps output:0

[zhreyaz]

kai@kai-VirtualBox:~/EIG/CONVERTF$ mergeit -p Final.par
parameter file: Final.par
geno1: NEO.geno
snp1: NEO.snp
ind1: NEO.ind
geno2: Cay.geno
snp2: Cay.snp
ind2: Cay.ind
outputformat: EIGENSTRAT
genooutfilename: merged_output.geno
snpoutfilename: merged_output.snp
indoutfilename: merged_output.ind
numsnps input: 1233013 1151145
eigenstrat output
numsnps output: 0 numindivs: 16

Histogram of checkmatch return codes
total: 0

##end of mergeit: 80.930 seconds cpu 1313.628 Mbytes in use

Hi, I'm encountering this issue in bold when attempting to merge two Eigenstrat files using the mergeit function, the .ind files are showing in the output but both .snp and .geno output files are blank. Please help me fix this, thanks

[zhreyaz]

Another issue:-

fatalx:
idnames too long: Luxembourg_Loschbour.DG Loschbour_snpAD.DG ll: 42 limit: 39

I don't understand what's wrong, characters are less than 39?

Edit:- I shortened Loschbour ID in .fam and it worked