From e575b256873b2b3dad5d6fc4e2eed6c653e425a0 Mon Sep 17 00:00:00 2001
From: JLBegin <ludovick.begin@gmail.com>
Date: Sat, 19 Apr 2025 21:32:43 -0400
Subject: [PATCH 1/3] Create test-coverage.yaml

---
 .github/workflows/test-coverage.yaml | 41 ++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)
 create mode 100644 .github/workflows/test-coverage.yaml

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
new file mode 100644
index 00000000..55e2763d
--- /dev/null
+++ b/.github/workflows/test-coverage.yaml
@@ -0,0 +1,41 @@
+name: Test Coverage
+
+on: [ pull_request, workflow_dispatch ]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v4
+
+      - name: Linux packages for Qt5/Qt6 support and start Xvfb
+        uses: pyvista/setup-headless-display-action@v3
+        with:
+          qt: true
+
+      - name: Linux OpenCL support
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y pocl-opencl-icd ocl-icd-opencl-dev gcc clinfo
+          clinfo
+
+      - name: Set up Python 3.11
+        uses: actions/setup-python@v5
+        with:
+          python-version: 3.11
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -e .[dev]
+
+      - name: Run tests with coverage
+        env:
+          PTO_CI_MODE: 1
+        run: |
+          coverage run -m pytest -v --cov=pytissueoptics --cov-report=xml --cov-report=html
+
+      - name: Upload coverage report
+        uses: codecov/codecov-action@v4

From 0fbdaf536f7b007b362f195b1acb87049ba39cd4 Mon Sep 17 00:00:00 2001
From: JLBegin <ludovick.begin@gmail.com>
Date: Sat, 19 Apr 2025 21:44:03 -0400
Subject: [PATCH 2/3] Update tests.yaml

---
 .github/workflows/tests.yaml | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml
index b5dba491..2316f228 100644
--- a/.github/workflows/tests.yaml
+++ b/.github/workflows/tests.yaml
@@ -42,8 +42,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install setuptools>=40.8.0 wheel pytest
-          python -m pip install .
+          python -m pip install -e .[dev]
           python -m pip freeze --all
 
       - name: Validate OpenCL

From 479f875bfc19c4c8b1a935c23dfb53dd07aed8ba Mon Sep 17 00:00:00 2001
From: JLBegin <ludovick.begin@gmail.com>
Date: Sat, 19 Apr 2025 21:55:34 -0400
Subject: [PATCH 3/3] use pytest-cov

---
 .github/workflows/test-coverage.yaml | 2 +-
 pyproject.toml                       | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 55e2763d..f1e00a75 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -35,7 +35,7 @@ jobs:
         env:
           PTO_CI_MODE: 1
         run: |
-          coverage run -m pytest -v --cov=pytissueoptics --cov-report=xml --cov-report=html
+          pytest -v --cov=pytissueoptics --cov-report=xml --cov-report=html
 
       - name: Upload coverage report
         uses: codecov/codecov-action@v4
diff --git a/pyproject.toml b/pyproject.toml
index 06f218ad..f10bfa97 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -35,8 +35,8 @@ dependencies = [
 [project.optional-dependencies]
 dev = [
   "mockito",
-  "coverage",
   "pytest",
+  "pytest-cov",
   "ruff",
 ]