protools2/DESCRIPTION at master · CutillasLab/protools2 · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
Package: protools2
Type: Package
Title: A Set Of Tools For Proteomics And Phosphoproteomics Data Analysis
Version: 0.2.16
Date: 2025-04-15
Authors@R: c(
    person("Pedro", "Cutillas", , "p.cutillas@qmul.ac.uk", role = "aut",
           comment = c(ORCID = "0000-0002-3426-2274")),
    person("Irbaz", "Badshah", , "i.badshah@qmul.ac.uk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-7545-3851"))
  )
Maintainer: Pedro Rodriguez Cutillas <p.cutillas@qmul.ac.uk>
Description: Reads and normalizes data from Pescal. Does statistical analysis using limma or t-test. It also incoroporates functions for KSEA, pathway analysis and network visualization tools.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 3.5.0)
Imports:
    knitr,
    devtools,
    webshot,
    webshot2,
    flextable,
    kableExtra,
    ggpubr,
    gplots,
    grid,
    gridExtra,
    cowplot,
    egg,
    ggrepel,
    reshape2,
    viridisLite,
    plotly,
    heatmaply,
    umap,
    VIM,
    openxlsx,
    readxl,
    tools,
    igraph,
    data.table,
    magrittr,
    tibble,
    ggplot2,
    dplyr,
    tidyr,
    readr,
    purrr,
    stringr,
    forcats,
    dtplyr,
    parallel,
    foreach,
    doParallel,
    limma,
    ComplexHeatmap
RoxygenNote: 7.3.2