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Dear authors,
There is at least one file missing from the data download you suggest.
After applying my suggested changes (#1), when I try to run your example code:
python preprocess.py -c ./configure/osmFISH_Zeisel.yaml
I get the following error:
FileNotFoundError: [Errno 2] No such file or directory: './data/w_osmFISH_Zeisel_magic_fold1.pkl'
Thank you for your work on this project!
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