Search for LTRs in large genome(>20G)

[linyuiz]

Dear Developer, Hello!
I am currently annotating LTRs in a 22G genome and would like to know if there is any difference between running judge_LTR_transposons.py on the entire genome versus running it on individual chromosomes and then merging the results. Since the genome is quite large, running the script on the whole genome would be very slow.
The longest chromosome in my genome is 2.2 Gbp, and the shortest one is 1.3 Gbp.
However, I have access to a SLURM cluster. If splitting the task into individual chromosomes does not affect the results, I would like to try running the script per chromosome. Would this be feasible?
Below is the script I ran：

judge_LTR_transposons.py -g 22G.genome.fa.clean -t 60 --recover 1 --use_HybridLTR 1 --use_NeuralTE 1 --miu 1.3e-8 --is_wicker 0 --is_output_lib 1 -w ./tmp --prev_TE merged.tmp_lib.fa --debug 0