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Dear Author,
when I use The CALDER to run the demo data, i could not get a successful result:
library(CALDER)
contact_mat_file <- system.file("extdata", "mat_chr22_10kb_ob.txt.gz", package='CALDER')
CALDER_main(contact_mat_file,
chr=22,
bin_size=10E3,
out_dir='./GM12878',
sub_domains=TRUE,
save_intermediate_data=FALSE
)
>>>> Begin process contact matrix and compute correlation score at: 2023-11-23 19:13:07.592163
>>>> Begin compute compartment domains and their hierachy at: 2023-11-23 19:14:15.745756Error in i_set_vertex_attr(x, attr(value, "name"), index = value, value = attr(value, :
Length of new attribute value must be 1 or 0, the number of target vertices, not 2
Error in rep(hc_k_labels_full, sapply(res$initial_clusters, length)) :
'times'参数不对
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