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Hi Cyril,
It appears that if options.norm = 'EPInorm', then a few things occur that need to be remedied:
--segmentation is not performed, only a normalisation using "Old Normalise" (l954-l976 of spmup_BIDS_preprocess.m). I am not sure if it makes sense to do segmentation using "Old Segment" or the spm12 segment. Regardless, perhaps the segmentation should be done first and the subject-space c1, c2, and c3 maps included in the normalisation?
--anat images are not normalised (see l959 of spmup_BIDS_preprocess.m, only functional images specified)
All of this results in an error in spmup_anatQA when it is called in spmup_BIDS_preprocess.m (l1010) because it cannot find the segmentations.
Kind regards,
Patrick
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