diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd index 1c7ed54..b3ef303 100644 --- a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd +++ b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.Rmd @@ -2,7 +2,9 @@ title: "TEMPEST_Aquifer_WellTest_202509" author: "Stephanie J. Wilson" date: "2025-09-05" -output: pdf_document +output: + pdf_document: + latex_engine: xelatex --- ```{r setup, include=FALSE} @@ -17,14 +19,16 @@ library(tidyr) library(lubridate) library(knitr) library(tibble) +library(patchwork) ``` - ## Aquatroll (AQ600) Well Data - ```{r, echo=FALSE} +cat("In Situ AQ600 was put in a bucket with the well outflow. + Data was recorded every minute for the duration of the test. + Missing points are from removing the AQ600 from the bucket to check transmission.") well_dat <- read.csv("COMPASS_TEMPEST_WellTest_AQ600_Data.csv") -head(well_dat) +#head(well_dat) #change column names in well_dat colnames(well_dat) <- c("Date_Time","pH", "pH_mV" ,"ORP_mV", "DO_mgL", "DO_Sat", "DO_pp", "Actual_Conductivity_µScm" , @@ -43,54 +47,55 @@ well_dat_filtered <- well_dat %>% filter(DO_mgL < 1) %>% filter(TDS_ppt > 0.10) +#create a table of average concentrations: +summary_stats <- well_dat_filtered %>% + summarise( + Salinity_psu_mean = mean(Salinity_psu, na.rm = TRUE), + Salinity_psu_sd = sd(Salinity_psu, na.rm = TRUE), + Sp_Conductivity_µScm_mean = mean(Specific_Conductivity_µScm, na.rm = TRUE), + Sp_Conductivity_µScm_sd = sd(Specific_Conductivity_µScm, na.rm = TRUE), + DO_mgL_mean = mean(DO_mgL, na.rm = TRUE), + DO_mgL_sd = sd(DO_mgL, na.rm = TRUE), + TDS_ppt_mean = mean(TDS_ppt, na.rm = TRUE), + TDS_ppt_sd = sd(TDS_ppt, na.rm = TRUE) + ) %>% + pivot_longer( + everything(), + names_to = c("Measurement", ".value"), + names_sep = "_(?=[^_]+$)" # Split at last underscore + ) %>% + mutate(mean = round(mean, 3), + sd = round(sd, 3)) + +kable(summary_stats) + #plot Salinity sal <- ggplot()+ geom_point(data=well_dat_filtered, aes(x=Date_Time, y=Salinity_psu), size=2, color="blue")+ theme_bw()+ labs(x="Time", y="Salinity (psu)", title="Aquifer Salinity") + theme(legend.title = element_blank()) -sal + #plot Conductivity cond <- ggplot()+ geom_point(data=well_dat_filtered, aes(x=Date_Time, y=Specific_Conductivity_µScm), size=2, color="darkblue")+ theme_bw()+ labs(x="Time", y="Specific Conductivity (µScm)", title="Aquifer Conductivity") + theme(legend.title = element_blank()) -cond + +sal + cond #plot DO do <- ggplot()+ geom_point(data=well_dat_filtered, aes(x=Date_Time, y=DO_mgL), size=2, color="darkred")+ theme_bw()+ labs(x="Time", y="Dissolved Oxygen (mg/L)", title="Aquifer Dissolved Oxygen") + theme(legend.title = element_blank()) -do #plot TDS tds <- ggplot()+ geom_point(data=well_dat_filtered, aes(x=Date_Time, y=TDS_ppt), size=2, color="darkgreen")+ theme_bw()+ labs(x="Time", y="Total Dissolved Solids (ppt))", title="Aquifer TDS") + theme(legend.title = element_blank()) -tds +do + tds -#create a table of average concentrations: -summary_stats <- well_dat_filtered %>% - summarise( - Salinity_psu_mean = mean(Salinity_psu, na.rm = TRUE), - Salinity_psu_sd = sd(Salinity_psu, na.rm = TRUE), - Sp_Conductivity_µScm_mean = mean(Specific_Conductivity_µScm, na.rm = TRUE), - Sp_Conductivity_µScm_sd = sd(Specific_Conductivity_µScm, na.rm = TRUE), - DO_mgL_mean = mean(DO_mgL, na.rm = TRUE), - DO_mgL_sd = sd(DO_mgL, na.rm = TRUE), - TDS_ppt_mean = mean(TDS_ppt, na.rm = TRUE), - TDS_ppt_sd = sd(TDS_ppt, na.rm = TRUE) - ) %>% - pivot_longer( - everything(), - names_to = c("Measurement", ".value"), - names_sep = "_(?=[^_]+$)" # Split at last underscore - ) %>% - mutate(mean = round(mean, 3), - sd = round(sd, 3)) - -kable(summary_stats) ``` diff --git a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.log b/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.log deleted file mode 100644 index 93e2e76..0000000 --- a/Data/aquifer_well/well_test_202509/TEMPEST_Aquifer_WellTest_202509_Data.log +++ /dev/null @@ -1,488 +0,0 @@ -This is pdfTeX, Version 3.141592653-2.6-1.40.28 (TeX Live 2025) (preloaded format=pdflatex 2025.9.16) 16 SEP 2025 15:18 -entering extended mode - restricted \write18 enabled. - %&-line parsing enabled. -**TEMPEST_Aquifer_WellTest_202509_Data.tex 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Wilson}, - hidelinks, - pdfcreator={LaTeX via pandoc}} - -\title{TEMPEST\_Aquifer\_WellTest\_202509} -\author{Stephanie J. Wilson} -\date{2025-09-05} - -\begin{document} -\maketitle - -\hypertarget{aquatroll-aq600-well-data}{% -\subsection{Aquatroll (AQ600) Well -Data}\label{aquatroll-aq600-well-data}} - -\begin{verbatim} -## Date.Time pH..pH...944309. pH.mV..mV...944309. ORP..mV...944309. -## 1 9/4/2025 11:17 6.495730 -18.05306 52.60867 -## 2 9/4/2025 11:18 6.647882 -26.98898 68.12972 -## 3 9/4/2025 11:19 6.682134 -29.02031 85.54858 -## 4 9/4/2025 11:20 6.633854 -26.22127 77.78805 -## 5 9/4/2025 11:21 6.560904 -21.94166 82.00092 -## 6 9/4/2025 11:22 6.654690 -27.51112 82.88068 -## RDO.Concentration..mg.L...1147009. RDO.Saturation...Sat...1147009. -## 1 8.606227 105.6606 -## 2 8.534517 104.2574 -## 3 8.352296 102.1634 -## 4 8.202514 101.0138 -## 5 8.139626 100.5348 -## 6 8.077275 100.3783 -## Oxygen.Partial.Pressure..Torr...1147009. Actual.Conductivity..µS.cm...951425. -## 1 164.3766 2.58297180 -## 2 162.5227 0.16385819 -## 3 159.4851 0.14043684 -## 4 157.7733 0.05494505 -## 5 157.2076 0.05494505 -## 6 156.9583 0.05494505 -## Specific.Conductivity..µS.cm...951425. Salinity..PSU...951425. -## 1 2.41987160 0.000197676 -## 2 0.15404756 0.000000000 -## 3 0.13160895 0.000000000 -## 4 0.05105140 0.000000000 -## 5 0.05080564 0.000000000 -## 6 0.05044154 0.000000000 -## Resistivity..Ω.cm...951425. Density..g.cm....951425. -## 1 387151 0.9960858 -## 2 6102838 0.9961417 -## 3 7120639 0.9960905 -## 4 18200000 0.9959506 -## 5 18200000 0.9958704 -## 6 18200000 0.9957489 -## Total.Dissolved.Solids..ppt...951425. Temperature...C...951973. -## 1 0.001572917 28.52881 -## 2 0.000100131 28.33433 -## 3 0.000085500 28.51187 -## 4 0.000033200 28.99316 -## 5 0.000033000 29.26573 -## 6 0.000032800 29.67444 -## External.Voltage..V...951973. Battery.Capacity......951973. -## 1 0.198 85 -## 2 0.225 85 -## 3 0.252 85 -## 4 0.279 85 -## 5 0.279 85 -## 6 0.279 85 -## Barometric.Pressure..mm.Hg...951973. Pressure..psi...948746. -## 1 796.8252 -0.7291880 -## 2 798.0554 -0.7513886 -## 3 799.4504 -0.7792616 -## 4 800.6805 -0.8005018 -## 5 802.0531 -0.8337517 -## 6 802.7581 -0.8441944 -## Depth..cm...948746. -## 1 -50.73192 -## 2 -33.94244 -## 3 -40.70903 -## 4 -42.28736 -## 5 -44.53247 -## 6 -45.24200 -\end{verbatim} - -\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-1.pdf} -\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-2.pdf} -\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-3.pdf} -\includegraphics{TEMPEST_Aquifer_WellTest_202509_Data_files/figure-latex/unnamed-chunk-1-4.pdf} - -\begin{longtable}[]{@{}lrr@{}} -\toprule\noalign{} -Measurement & mean & sd \\ -\midrule\noalign{} -\endhead -\bottomrule\noalign{} -\endlastfoot -Salinity\_psu & 0.090 & 0.005 \\ -Sp\_Conductivity\_µScm & 188.638 & 10.162 \\ -DO\_mgL & 0.208 & 0.232 \\ -TDS\_ppt & 0.123 & 0.007 \\ -\end{longtable} - -\end{document}