Backlog tasks #62
Description
This is a tracking issue to keep a list of issues that are not urgent enough to have an issue of their own. Issues listed here are most likely "nice to have" features or medium/long-term maintenance tasks we do not have the bandwidth to work on while we are still developing new functionality.
Metadata
Better support uploading of samples from 1 year ago Allow uploading of samples >1 year old #84[validator] Add additional countries to adm1 #50
Majora maintenance and scale
- Update Majora scopes (remove scopeless API endpoints and provide a scope for list_artifact that allows for more granularity below view_artifact)
- Accession export task fails with Got a packet bigger than 'max_allowed_packet' bytes" (Accession export task fails with
Got a packet bigger than 'max_allowed_packet' bytes"#56) - Stream large packets to clients [majora] Stream large API responses to clients #34
- Tatl logging tables in Majora are getting quite large and should be offloaded somewhere
Pipeline glue and infrastructure
- Simplify reporting of samples with missing data (Simplify reporting of samples with missing data #24)
- MQTT handlers could respond to a reboot roll call #119
- Backup variant sq3 process does not retry gracefully #112
- create an ocarina oauth check command #66
CLIMB-COVID systems
- Improve performance of filesystem queries by avoiding them (Improve performance of filesystem queries by avoiding them #19)
Outbound data distribution
- Automatically scrape ENA ERZ accessions and convert to INSDC accessions (ENA consensus submissions #11)