From 2f7ab8734104a6de352d748f9a8d2b1faed9d8c4 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 9 Oct 2025 10:20:19 +0200 Subject: [PATCH 01/20] chore: set default install hook types in pre-commit config --- .pre-commit-config.yaml | 3 +++ Makefile | 2 +- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index a71a3b3..85272c8 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,5 +1,8 @@ # See https://pre-commit.com for more information # See https://pre-commit.com/hooks.html for more hooks +default_install_hook_types: + - pre-commit + - commit-msg repos: - repo: https://github.com/pre-commit/pre-commit-hooks rev: v5.0.0 diff --git a/Makefile b/Makefile index e28e124..5be97be 100644 --- a/Makefile +++ b/Makefile @@ -1,6 +1,6 @@ install: pip install -e ".[dev]" - pre-commit install -t pre-commit -t commit-msg + pre-commit install lint: pre-commit run --all-files From 392ed5845c2dc4d807de51a54e83f2e99f8052ee Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Mon, 20 Oct 2025 17:32:40 +0200 Subject: [PATCH 02/20] feat: add julia and conda environment managers --- frame_cli/environment_managers/conda.py | 24 ++++++++++++ .../environment_manager.py | 39 +++++++++++++++++++ frame_cli/environment_managers/julia.py | 24 ++++++++++++ .../{python_requirements.py => python.py} | 15 ++++--- frame_cli/pull.py | 22 ++++++----- pyproject.toml | 1 + 6 files changed, 110 insertions(+), 15 deletions(-) create mode 100644 frame_cli/environment_managers/conda.py create mode 100644 frame_cli/environment_managers/julia.py rename frame_cli/environment_managers/{python_requirements.py => python.py} (72%) diff --git a/frame_cli/environment_managers/conda.py b/frame_cli/environment_managers/conda.py new file mode 100644 index 0000000..6238d19 --- /dev/null +++ b/frame_cli/environment_managers/conda.py @@ -0,0 +1,24 @@ +"""Module containing the CondaEnvironmentManager class.""" + +import os + +from rich.console import Console + +from .environment_manager import EnvironmentManager + + +class CondaEnvironmentManager(EnvironmentManager): + """Environment manager for Conda.""" + + type = "conda" + + def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> None: + """Set up the environment for the hybrid model. + + Args: + destination (str): Hybrid model destination directory where the environment is set up. + file_paths (list[str]): List of paths to files that describe the environment. + """ + os.chdir(destination) + console = Console() + console.print("Setting up of Conda environment not implemented. Skipping...") diff --git a/frame_cli/environment_managers/environment_manager.py b/frame_cli/environment_managers/environment_manager.py index 99831ab..adc9429 100644 --- a/frame_cli/environment_managers/environment_manager.py +++ b/frame_cli/environment_managers/environment_manager.py @@ -1,6 +1,10 @@ """Module containing the EnvironmentManager abstract base class.""" from abc import ABC, abstractmethod +import importlib +import inspect +import os +import pkgutil class EnvironmentManager(ABC): @@ -16,3 +20,38 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non destination (str): Hybrid model destination directory where the environment is set up. file_paths (list[str]): List of paths to files that describe the environment. """ + + +def _get_environment_manager_subclasses() -> dict[str, type[EnvironmentManager]]: + package_path = os.path.dirname(__file__) + subclasses = {} + + for module_info in pkgutil.iter_modules([package_path]): + if module_info.ispkg: + continue + + module = importlib.import_module(f"{__package__}.{module_info.name}") + + for _, obj in inspect.getmembers(module): + if inspect.isclass(obj) and issubclass(obj, EnvironmentManager) and obj is not EnvironmentManager: + subclasses[obj.type] = obj + + return subclasses + + +_environment_manager_subclasses: dict | None = None + + +def get_environment_manager(environment_type: str) -> EnvironmentManager | None: + """Get an instance of environment manager for the given type.""" + global _environment_manager_subclasses + + if _environment_manager_subclasses is None: + _environment_manager_subclasses = _get_environment_manager_subclasses() + + manager_class = _environment_manager_subclasses.get(environment_type) + + if manager_class is not None: + return manager_class() + + return None diff --git a/frame_cli/environment_managers/julia.py b/frame_cli/environment_managers/julia.py new file mode 100644 index 0000000..43c3730 --- /dev/null +++ b/frame_cli/environment_managers/julia.py @@ -0,0 +1,24 @@ +"""Module containing the JuliaEnvironmentManager class.""" + +import os + +from rich.console import Console + +from .environment_manager import EnvironmentManager + + +class JuliaEnvironmentManager(EnvironmentManager): + """Environment manager for Julia.""" + + type = "julia" + + def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> None: + """Set up the environment for the hybrid model. + + Args: + destination (str): Hybrid model destination directory where the environment is set up. + file_paths (list[str]): List of paths to files that describe the environment. + """ + os.chdir(destination) + console = Console() + console.print("Setting up of Julia environment not implemented. Skipping...") diff --git a/frame_cli/environment_managers/python_requirements.py b/frame_cli/environment_managers/python.py similarity index 72% rename from frame_cli/environment_managers/python_requirements.py rename to frame_cli/environment_managers/python.py index 9781ad9..5ebc416 100644 --- a/frame_cli/environment_managers/python_requirements.py +++ b/frame_cli/environment_managers/python.py @@ -1,4 +1,4 @@ -"""Module containing the PythonRequirementsEnvironmentManager class.""" +"""Module containing the PythonEnvironmentManager class.""" import os import subprocess @@ -10,10 +10,10 @@ from .environment_manager import EnvironmentManager -class PythonRequirementsEnvironmentManager(EnvironmentManager): - """Environment manager for Python requirements.""" +class PythonEnvironmentManager(EnvironmentManager): + """Environment manager for Python.""" - type = "python_requirements" + type = "python" def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> None: """Set up the environment for the hybrid model. @@ -27,8 +27,11 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non console.print("Setting up Python environment...") subprocess.run(["uv", "venv"]) subprocess.run(["uv", "pip", "install", "pip"]) - for requirement_path in file_paths: - subprocess.run(["uv", "pip", "install", "-r", requirement_path]) + for file_path in file_paths: + if file_path.endswith(".txt"): + subprocess.run(["uv", "pip", "install", "-r", file_path]) + else: + console.print(f"Unsupported file {file_path}. Skipping...") console.print("Python environment setup complete. Activate it from the model's root directory with") activation_message = f"cd {destination}\n" diff --git a/frame_cli/pull.py b/frame_cli/pull.py index b09b237..84464e6 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -7,7 +7,7 @@ from .config import API_URL from .downloaders.git import GitDownloader -from .environment_managers.python_requirements import PythonRequirementsEnvironmentManager +from .environment_managers.environment_manager import get_environment_manager from .info import add_local_model_info from .utils import get_unit_id_and_version @@ -39,13 +39,16 @@ def retrieve_model_info(name: str) -> dict[str, Any] | None: def setup_environment(destination: str, environment: dict[str, Any]) -> None: - # TODO: Automate choice of environment manager subclass from environment["type"] - if environment["type"] == "python_requirements": - environment_manager = PythonRequirementsEnvironmentManager() - environment_manager.setup( - destination, - environment["file_paths"], - ) + environment_manager = get_environment_manager(environment["type"]) + + if environment_manager is None: + print(f"Cannot setup environment of type {environment['type']}. Skipping...") + return + + environment_manager.setup( + destination, + environment["file_paths"], + ) def pull_model(name: str, destination: str | None) -> None: @@ -65,7 +68,8 @@ def pull_model(name: str, destination: str | None) -> None: destination = downloader.download(url, destination) add_local_model_info(name, url, destination) - computational_environment = info.get("computational_environment", []) + # computational_environment = info.get("computational_environment", []) + computational_environment = [{"type": "julia", "file_paths": ["requirements.txt"]}] # TODO: remove test if computational_environment: print("Setting up computational environment...") for environment in computational_environment: diff --git a/pyproject.toml b/pyproject.toml index 89b02c6..1e4ef4a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -66,6 +66,7 @@ testpaths = [ [tool.ruff] line-length = 120 +preview = true [tool.codespell] skip = 'uv.lock,docs/_static/custom.css' From cd0542e0f7e2df277f86aed3473fce4172af07c7 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Mon, 20 Oct 2025 18:26:35 +0200 Subject: [PATCH 03/20] chore: add test of python environment setup --- frame_cli/environment_managers/python.py | 5 +- pyproject.toml | 5 + tests/test_dummy.py | 4 - tests/test_environment_managers.py | 69 ++ uv.lock | 1309 ++++++++++++---------- 5 files changed, 805 insertions(+), 587 deletions(-) delete mode 100644 tests/test_dummy.py create mode 100644 tests/test_environment_managers.py diff --git a/frame_cli/environment_managers/python.py b/frame_cli/environment_managers/python.py index 5ebc416..f19060e 100644 --- a/frame_cli/environment_managers/python.py +++ b/frame_cli/environment_managers/python.py @@ -27,8 +27,11 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non console.print("Setting up Python environment...") subprocess.run(["uv", "venv"]) subprocess.run(["uv", "pip", "install", "pip"]) + for file_path in file_paths: - if file_path.endswith(".txt"): + if file_path == "pyproject.toml": + subprocess.run(["uv", "pip", "install", "-e", "."]) + elif file_path.endswith(".txt"): subprocess.run(["uv", "pip", "install", "-r", file_path]) else: console.print(f"Unsupported file {file_path}. Skipping...") diff --git a/pyproject.toml b/pyproject.toml index 1e4ef4a..b8833e6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -73,3 +73,8 @@ skip = 'uv.lock,docs/_static/custom.css' [tool.uv.sources] frame-api = { git = "https://github.com/CHANGE-EPFL/frame-project", subdirectory = "backend" } + +[tool.uv.workspace] +members = [ + "test-model", +] diff --git a/tests/test_dummy.py b/tests/test_dummy.py deleted file mode 100644 index ed18c28..0000000 --- a/tests/test_dummy.py +++ /dev/null @@ -1,4 +0,0 @@ -def test_dummy(): - import frame_cli - - assert frame_cli is not None diff --git a/tests/test_environment_managers.py b/tests/test_environment_managers.py new file mode 100644 index 0000000..9f22012 --- /dev/null +++ b/tests/test_environment_managers.py @@ -0,0 +1,69 @@ +import os +from pathlib import Path + +import pytest + +from frame_cli.environment_managers.environment_manager import get_environment_manager + + +@pytest.fixture +def temp_dir_without_python_env(tmp_path: Path) -> Path: + """Get a temporary directory without any active Python environment.""" + + os.environ.pop("VIRTUAL_ENV", None) + os.environ.pop("CONDA_PREFIX", None) + os.environ.pop("CONDA_DEFAULT_ENV", None) + return tmp_path + + +class TestPython: + def check_setup(self, dir: Path) -> None: + """Check if the Python environment was set up correctly.""" + + try: + python_lib_path = os.listdir(dir / ".venv" / "lib")[0] + except FileNotFoundError: + pytest.fail("Python environment was not set up correctly: .venv/lib directory not found.") + + try: + libs = os.listdir(dir / ".venv" / "lib" / python_lib_path / "site-packages") + except FileNotFoundError: + pytest.fail("Python environment was not set up correctly: site-packages directory not found.") + + assert any(lib.startswith("numpy") for lib in libs) + + def test_requirements(self, temp_dir_without_python_env: Path) -> None: + """Test Python environment setup with requirements.txt file.""" + + os.chdir(temp_dir_without_python_env) + requirements_file_path = temp_dir_without_python_env / "requirements.txt" + with open(requirements_file_path, "w") as f: + f.write("numpy") + + environment_manager = get_environment_manager("python") + assert environment_manager is not None + + file_paths = ["requirements.txt"] + environment_manager.setup(str(temp_dir_without_python_env), file_paths) + + self.check_setup(temp_dir_without_python_env) + + def test_pyproject(self, temp_dir_without_python_env: Path) -> None: + """Test Python environment setup with pyproject.toml file.""" + + os.chdir(temp_dir_without_python_env) + pyproject_file_path = temp_dir_without_python_env / "pyproject.toml" + with open(pyproject_file_path, "w") as f: + f.write("""[project] + name = "test_project" + version = "0.1.0" + dependencies = ["numpy"] + """) + + environment_manager = get_environment_manager("python") + assert environment_manager is not None + + file_paths = ["pyproject.toml"] + environment_manager.setup(str(temp_dir_without_python_env), 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--git a/frame_cli/environment_managers/conda.py b/frame_cli/environment_managers/conda.py index 6238d19..aa64d29 100644 --- a/frame_cli/environment_managers/conda.py +++ b/frame_cli/environment_managers/conda.py @@ -1,8 +1,10 @@ """Module containing the CondaEnvironmentManager class.""" import os +import subprocess from rich.console import Console +from rich.panel import Panel from .environment_manager import EnvironmentManager @@ -21,4 +23,34 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non """ os.chdir(destination) console = Console() - console.print("Setting up of Conda environment not implemented. Skipping...") + + conda_commands = ["conda", "mamba", "micromamba"] + conda_command = None + + for conda_command in conda_commands: + try: + subprocess.run([conda_command, "--version"], check=True, capture_output=True) # type: ignore + break + except (subprocess.CalledProcessError, FileNotFoundError): + conda_command = None + + if conda_command is None: + console.print( + "No Conda (or equivalent) installation found. Please install Conda, Mamba, or Micromamba to create an environment for this model." + ) + return + + console.print("Setting up of Conda environment...") + for file_path in file_paths: + if not os.path.isfile(file_path): + console.print(f"File {file_path} does not exist. Skipping...") + continue + if file_path.endswith((".yml", ".yaml")): + subprocess.run([conda_command, "env", "create", "-f", file_path, "--prefix", "./.venv", "-y"]) + console.print(f"Conda environment setup from {file_path} complete. Skipping remaining files...") + else: + console.print(f"Unsupported file {file_path}. Skipping...") + + console.print("Conda environment setup complete. Activate it from the model's root directory with") + activation_message = f"cd {destination}\n{conda_command} activate ./.venv" + console.print(Panel(activation_message)) diff --git a/frame_cli/environment_managers/python.py b/frame_cli/environment_managers/python.py index f19060e..73e729a 100644 --- a/frame_cli/environment_managers/python.py +++ b/frame_cli/environment_managers/python.py @@ -29,6 +29,9 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non subprocess.run(["uv", "pip", "install", "pip"]) for file_path in file_paths: + if not os.path.isfile(file_path): + console.print(f"File {file_path} does not exist. Skipping...") + continue if file_path == "pyproject.toml": subprocess.run(["uv", "pip", "install", "-e", "."]) elif file_path.endswith(".txt"): diff --git a/tests/test_environment_managers.py b/tests/test_environment_managers.py index 9f22012..8379508 100644 --- a/tests/test_environment_managers.py +++ b/tests/test_environment_managers.py @@ -7,9 +7,10 @@ @pytest.fixture -def temp_dir_without_python_env(tmp_path: Path) -> Path: +def model_dir_path(tmp_path: Path) -> Path: """Get a temporary directory without any active Python environment.""" + os.chdir(tmp_path) os.environ.pop("VIRTUAL_ENV", None) os.environ.pop("CONDA_PREFIX", None) os.environ.pop("CONDA_DEFAULT_ENV", None) @@ -32,11 +33,10 @@ def check_setup(self, dir: Path) -> None: assert any(lib.startswith("numpy") for lib in libs) - def test_requirements(self, temp_dir_without_python_env: Path) -> None: + def test_requirements_txt(self, model_dir_path: Path) -> None: """Test Python environment setup with requirements.txt file.""" - os.chdir(temp_dir_without_python_env) - requirements_file_path = temp_dir_without_python_env / "requirements.txt" + requirements_file_path = model_dir_path / "requirements.txt" with open(requirements_file_path, "w") as f: f.write("numpy") @@ -44,26 +44,66 @@ def test_requirements(self, temp_dir_without_python_env: Path) -> None: assert environment_manager is not None file_paths = ["requirements.txt"] - environment_manager.setup(str(temp_dir_without_python_env), file_paths) + environment_manager.setup(str(model_dir_path), file_paths) - self.check_setup(temp_dir_without_python_env) + self.check_setup(model_dir_path) - def test_pyproject(self, temp_dir_without_python_env: Path) -> None: + def test_pyproject_toml(self, model_dir_path: Path) -> None: """Test Python environment setup with pyproject.toml file.""" - os.chdir(temp_dir_without_python_env) - pyproject_file_path = temp_dir_without_python_env / "pyproject.toml" + pyproject_file_path = model_dir_path / "pyproject.toml" with open(pyproject_file_path, "w") as f: f.write("""[project] - name = "test_project" - version = "0.1.0" - dependencies = ["numpy"] - """) +name = "test_model" +version = "0.1.0" +dependencies = ["numpy"]""") environment_manager = get_environment_manager("python") assert environment_manager is not None file_paths = ["pyproject.toml"] - environment_manager.setup(str(temp_dir_without_python_env), file_paths) + environment_manager.setup(str(model_dir_path), file_paths) - self.check_setup(temp_dir_without_python_env) + self.check_setup(model_dir_path) + + +class TestConda: + def check_setup(self, dir: Path) -> None: + """Check if the Conda environment was set up correctly.""" + + try: + libs = os.listdir(dir / ".venv" / "lib") + except FileNotFoundError: + pytest.fail("Conda environment was not set up correctly: .venv/lib directory not found.") + + try: + python_lib_path = [lib for lib in libs if lib.startswith("python")][0] + except IndexError: + pytest.fail("Conda environment was not set up correctly: Python lib directory not found.") + + try: + libs = os.listdir(dir / ".venv" / "lib" / python_lib_path / "site-packages") + except FileNotFoundError: + pytest.fail("Conda environment was not set up correctly: site-packages directory not found.") + + assert any(lib.startswith("numpy") for lib in libs) + + def test_environment_yml(self, model_dir_path: Path) -> None: + """Test Conda environment setup with environment.yml file.""" + + environment_file_path = model_dir_path / "environment.yml" + with open(environment_file_path, "w") as f: + f.write("""name: test-env +channels: + - defaults +dependencies: + - python=3.13 + - numpy""") + + environment_manager = get_environment_manager("conda") + assert environment_manager is not None + + file_paths = ["environment.yml"] + environment_manager.setup(str(model_dir_path), file_paths) + + self.check_setup(model_dir_path) From fa64ec36676cc05a201cc6cdbe9c4aa9f70beffb Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Tue, 21 Oct 2025 11:38:23 +0200 Subject: [PATCH 05/20] chore: add uv installation to CI --- .github/workflows/tests.yaml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/tests.yaml b/.github/workflows/tests.yaml index 0509008..b84c58a 100644 --- a/.github/workflows/tests.yaml +++ b/.github/workflows/tests.yaml @@ -25,6 +25,7 @@ jobs: - name: Install package run: | + pip install uv pip install -e ".[test]" - name: Test with pytest From 43136c63b952f2b9fb73c00d95af0a8c051d3d2a Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Tue, 21 Oct 2025 13:20:25 +0200 Subject: [PATCH 06/20] feat: add julia environment creation --- frame_cli/environment_managers/julia.py | 17 +++++++++++++++- frame_cli/pull.py | 4 +--- tests/test_environment_managers.py | 26 +++++++++++++++++++++++++ 3 files changed, 43 insertions(+), 4 deletions(-) diff --git a/frame_cli/environment_managers/julia.py b/frame_cli/environment_managers/julia.py index 43c3730..4159abf 100644 --- a/frame_cli/environment_managers/julia.py +++ b/frame_cli/environment_managers/julia.py @@ -1,8 +1,10 @@ """Module containing the JuliaEnvironmentManager class.""" import os +import subprocess from rich.console import Console +from rich.panel import Panel from .environment_manager import EnvironmentManager @@ -21,4 +23,17 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non """ os.chdir(destination) console = Console() - console.print("Setting up of Julia environment not implemented. Skipping...") + console.print("Setting up of Julia environment...") + + try: + subprocess.run(["julia", "--version"], check=True, capture_output=True) + except (subprocess.CalledProcessError, FileNotFoundError): + console.print("Julia installation not found. Please install Julia to create an environment for this model.") + return + + console.print("Setting up Julia environment using Project.toml...") + subprocess.run(["julia", "-e", 'using Pkg; Pkg.activate("."); Pkg.instantiate()']) + + console.print("Julia environment setup complete. Use it from the model's root directory with") + activation_message = f"cd {destination}\njulia --project=." + console.print(Panel(activation_message)) diff --git a/frame_cli/pull.py b/frame_cli/pull.py index 84464e6..5bb85a8 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -63,13 +63,11 @@ def pull_model(name: str, destination: str | None) -> None: print("Error retrieving the model URL.") return - # TODO: Detect which downloader to use downloader = GitDownloader() destination = downloader.download(url, destination) add_local_model_info(name, url, destination) - # computational_environment = info.get("computational_environment", []) - computational_environment = [{"type": "julia", "file_paths": ["requirements.txt"]}] # TODO: remove test + computational_environment = info.get("computational_environment", []) if computational_environment: print("Setting up computational environment...") for environment in computational_environment: diff --git a/tests/test_environment_managers.py b/tests/test_environment_managers.py index 8379508..f4fbbbf 100644 --- a/tests/test_environment_managers.py +++ b/tests/test_environment_managers.py @@ -107,3 +107,29 @@ def test_environment_yml(self, model_dir_path: Path) -> None: environment_manager.setup(str(model_dir_path), file_paths) self.check_setup(model_dir_path) + + +class TestJulia: + def check_setup(self, dir: Path) -> None: + """Check if the Julia environment was set up correctly.""" + + manifest_file_path = dir / "Manifest.toml" + if not manifest_file_path.is_file(): + pytest.fail("Julia environment was not set up correctly: Manifest.toml file not found.") + + def test_pyproject_toml(self, model_dir_path: Path) -> None: + """Test Julia environment setup with Project.toml file.""" + + project_file_path = model_dir_path / "Project.toml" + with open(project_file_path, "w") as f: + f.write("""[deps] +Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +""") + + environment_manager = get_environment_manager("julia") + assert environment_manager is not None + + file_paths = ["Project.toml"] + environment_manager.setup(str(model_dir_path), file_paths) + + self.check_setup(model_dir_path) From 26e95d18c19a1942aa2121f8d2b606fe651c578a Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Tue, 21 Oct 2025 13:22:55 +0200 Subject: [PATCH 07/20] chore: skip conda and julia tests if executables are not found --- tests/test_environment_managers.py | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/tests/test_environment_managers.py b/tests/test_environment_managers.py index f4fbbbf..94cf973 100644 --- a/tests/test_environment_managers.py +++ b/tests/test_environment_managers.py @@ -2,6 +2,7 @@ from pathlib import Path import pytest +import subprocess from frame_cli.environment_managers.environment_manager import get_environment_manager @@ -68,6 +69,19 @@ def test_pyproject_toml(self, model_dir_path: Path) -> None: class TestConda: + @pytest.fixture(autouse=True) + def check_conda_available(self) -> None: + """Check if Conda or equivalent is available.""" + + conda_commands = ["conda", "mamba", "micromamba"] + for conda_command in conda_commands: + try: + subprocess.run([conda_command, "--version"], check=True, capture_output=True) # type: ignore + return + except (subprocess.CalledProcessError, FileNotFoundError): + continue + pytest.skip("Conda or equivalent is not available. Skipping Conda environment tests.") + def check_setup(self, dir: Path) -> None: """Check if the Conda environment was set up correctly.""" @@ -110,6 +124,15 @@ def test_environment_yml(self, model_dir_path: Path) -> None: class TestJulia: + @pytest.fixture(autouse=True) + def check_julia_available(self) -> None: + """Check if Julia is available.""" + + try: + subprocess.run(["julia", "--version"], check=True, capture_output=True) + except (subprocess.CalledProcessError, FileNotFoundError): + pytest.skip("Julia is not available. Skipping Julia environment tests.") + def check_setup(self, dir: Path) -> None: """Check if the Julia environment was set up correctly.""" From 87ae32a2d7a248f69c5bea88fec4e4ad752277bf Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Tue, 21 Oct 2025 13:41:14 +0200 Subject: [PATCH 08/20] fix: missing break in conda environment setup --- frame_cli/environment_managers/conda.py | 3 ++- frame_cli/environment_managers/julia.py | 2 +- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/frame_cli/environment_managers/conda.py b/frame_cli/environment_managers/conda.py index aa64d29..f1b1799 100644 --- a/frame_cli/environment_managers/conda.py +++ b/frame_cli/environment_managers/conda.py @@ -40,7 +40,7 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non ) return - console.print("Setting up of Conda environment...") + console.print("Setting up Conda environment...") for file_path in file_paths: if not os.path.isfile(file_path): console.print(f"File {file_path} does not exist. Skipping...") @@ -48,6 +48,7 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non if file_path.endswith((".yml", ".yaml")): subprocess.run([conda_command, "env", "create", "-f", file_path, "--prefix", "./.venv", "-y"]) console.print(f"Conda environment setup from {file_path} complete. Skipping remaining files...") + break else: console.print(f"Unsupported file {file_path}. Skipping...") diff --git a/frame_cli/environment_managers/julia.py b/frame_cli/environment_managers/julia.py index 4159abf..c25f549 100644 --- a/frame_cli/environment_managers/julia.py +++ b/frame_cli/environment_managers/julia.py @@ -23,7 +23,7 @@ def setup(self, destination: str, file_paths: list[str], *args, **kwargs) -> Non """ os.chdir(destination) console = Console() - console.print("Setting up of Julia environment...") + console.print("Setting up Julia environment...") try: subprocess.run(["julia", "--version"], check=True, capture_output=True) From 147574c17dfbd31598189ab1e62b35fc2d9c22c8 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Tue, 21 Oct 2025 13:41:38 +0200 Subject: [PATCH 09/20] chore: don't run docs workflow in pull requests --- .github/workflows/docs.yaml | 4 ---- 1 file changed, 4 deletions(-) diff --git a/.github/workflows/docs.yaml b/.github/workflows/docs.yaml index cf4b8fe..1e7a572 100644 --- a/.github/workflows/docs.yaml +++ b/.github/workflows/docs.yaml @@ -5,10 +5,6 @@ on: branches: - main tags: ["*"] - pull_request: - branches: - - main - types: [opened, synchronize, reopened] concurrency: # Skip intermediate builds: always. From aebbab44b1515815783cd61fe284bc1ad8b2aad2 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Tue, 21 Oct 2025 15:39:43 +0200 Subject: [PATCH 10/20] fix: computation of FAIR levels with empty fields ref change-epfl/frame-project#23 --- frame_cli/metadata.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/frame_cli/metadata.py b/frame_cli/metadata.py index ede46bb..3d14335 100644 --- a/frame_cli/metadata.py +++ b/frame_cli/metadata.py @@ -143,11 +143,15 @@ def show_fair_level(metadata: "MetadataFromFile") -> None: filled = False if isinstance(value, list) and len(value) == 0: filled = False + if isinstance(value, str) and value.strip() == "": + filled = False except AttributeError: filled = False logger.info(f"- {prop} ({'OK' if filled else 'MISSING'})") + logger.info("More details about FAIR levels on https://frame.epfl.ch/#/about") + else: logger.info("Well done!") From 665251aee9ca8655fad2617c172286052745e553 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Wed, 22 Oct 2025 09:06:03 +0200 Subject: [PATCH 11/20] feat: implement frame pull component command --- frame_cli/main.py | 12 ++++----- frame_cli/pull.py | 49 +++++++++++----------------------- frame_cli/show.py | 58 +++++----------------------------------- frame_cli/utils.py | 66 ++++++++++++++++++++++++++++++++++++++++++++++ 4 files changed, 93 insertions(+), 92 deletions(-) diff --git a/frame_cli/main.py b/frame_cli/main.py index e98cb19..01ef51a 100644 --- a/frame_cli/main.py +++ b/frame_cli/main.py @@ -114,13 +114,11 @@ def show_model( @show_app.command("component") def show_component( name: str = typer.Argument(..., help="Component name."), - local_model_path: str | None = typer.Argument( - None, help="Associated locally installed hybrid model path. If not provided, looks forn a remote component." - ), + local: bool = typer.Option(False, help="Show locally installed component info."), ) -> None: """Show information about a component.""" - if local_model_path: - show.show_local_component(name, local_model_path) + if local: + show.show_local_component(name) else: show.show_remote_component(name) @@ -172,10 +170,10 @@ def pull_model( @pull_app.command("component") def pull_component( name: str = typer.Argument(..., help="Component name."), - local_model_path: str = typer.Argument(..., help="Associated locally installed hybrid model path."), + destination: str | None = typer.Argument(None, help="Destination folder."), ) -> None: """Download a component.""" - pull.pull_component(name, local_model_path) + pull.pull_component(name, destination) if __name__ == "__main__": diff --git a/frame_cli/pull.py b/frame_cli/pull.py index 5bb85a8..c1b6c2f 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -1,41 +1,11 @@ """Module for `frame pull` commands.""" -from json import JSONDecodeError from typing import Any -import requests - -from .config import API_URL from .downloaders.git import GitDownloader from .environment_managers.environment_manager import get_environment_manager from .info import add_local_model_info -from .utils import get_unit_id_and_version - - -def retrieve_model_info(name: str) -> dict[str, Any] | None: - """Retrieve online info of a hybrid model.""" - - id, version = get_unit_id_and_version(name) - url = f"{API_URL}/hybrid_models/{id}" - if version is not None: - url += f"?model_version={version}" - response = requests.get(url) - - if response.status_code == 404: - print(f'Remote hybrid model "{name}" not found.') - return None - - if response.status_code != 200: - print(f"Error fetching remote hybrid model ({response.status_code}). Check the API URL.") - return None - - try: - info = response.json() - except JSONDecodeError: - print("Error decoding JSON. Check the API URL.") - return None - - return info +from .utils import retrieve_model_info, retrieve_component_info def setup_environment(destination: str, environment: dict[str, Any]) -> None: @@ -79,7 +49,18 @@ def pull_model(name: str, destination: str | None) -> None: print(link) -def pull_component(name: str, local_model_path: str) -> None: +def pull_component(name: str, destination: str | None) -> None: """Download a component.""" - # TODO: implement - print("This feature is not implemented yet.") + info, _ = retrieve_component_info(name) + if info is None: + return + + url = info.get("url", None) + + if url is None: + print("Error retrieving the model URL.") + return + + downloader = GitDownloader() + destination = downloader.download(url, destination) + # TODO: save info to local diff --git a/frame_cli/show.py b/frame_cli/show.py index c0fef1a..1188e42 100644 --- a/frame_cli/show.py +++ b/frame_cli/show.py @@ -1,13 +1,9 @@ """Module for `frame show` commands.""" -from json import JSONDecodeError - -import requests from rich.console import Console from rich.panel import Panel -from .config import API_URL -from .utils import get_unit_id_and_version +from .utils import retrieve_model_info, retrieve_component_info def print_keywords(console: Console, keywords: list[str], style: str) -> None: @@ -36,24 +32,8 @@ def print_pull_command(console: Console, command: str) -> None: def show_remote_model(name: str) -> None: """Show information about a remote hybrid model.""" - id, version = get_unit_id_and_version(name) - url = f"{API_URL}/hybrid_models/{id}" - if version is not None: - url += f"?model_version={version}" - response = requests.get(url) - - if response.status_code == 404: - print(f'Remote hybrid model "{name}" not found.') - return - - if response.status_code != 200: - print(f"Error fetching remote hybrid model ({response.status_code}). Check the API URL.") - return - - try: - info = response.json() - except JSONDecodeError: - print("Error decoding JSON. Check the API URL.") + info = retrieve_model_info(name) + if info is None: return console = Console() @@ -86,32 +66,8 @@ def show_local_model(name: str) -> None: def show_remote_component(name: str) -> None: """Show information about a remote component.""" - id, version = get_unit_id_and_version(name) - url_physics_based = f"{API_URL}/components/physics_based/{id}" - url_machine_learning = f"{API_URL}/components/machine_learning/{id}" - if version is not None: - url_physics_based += f"?component_version={version}" - url_machine_learning += f"?component_version={version}" - - response = requests.get(url_physics_based) - component_type = "Physics-based" - - if response.status_code == 404: - response = requests.get(url_machine_learning) - component_type = "Machine learning" - - if response.status_code == 404: - print(f'Remote component "{name}" not found.') - return - - if response.status_code != 200: - print(f"Error fetching remote component ({response.status_code}). Check the API URL.") - return - - try: - info = response.json() - except JSONDecodeError: - print("Error decoding JSON. Check the API URL.") + info, component_type = retrieve_component_info(name) + if info is None: return console = Console() @@ -135,10 +91,10 @@ def show_remote_component(name: str) -> None: console.print(f"📜 License: {info['license']}") console.print("") - print_pull_command(console, f"frame pull component {name} ") + print_pull_command(console, f"frame pull component {name}") -def show_local_component(name: str, local_model_path: str) -> None: +def show_local_component(name: str) -> None: """Show information about a local component.""" # TODO: implement print("This feature is not implemented yet.") diff --git a/frame_cli/utils.py b/frame_cli/utils.py index b8064f2..7b52cce 100644 --- a/frame_cli/utils.py +++ b/frame_cli/utils.py @@ -1,5 +1,11 @@ """Set of functions used in multiple other modules.""" +from json import JSONDecodeError +import requests +from typing import Any + +from .config import API_URL + def get_unit_id_and_version(name: str) -> tuple[str, str | None]: """Extract unit ID and version from a name.""" @@ -11,3 +17,63 @@ def get_unit_id_and_version(name: str) -> tuple[str, str | None]: unit_id, version = name, None return unit_id, version + + +def retrieve_model_info(name: str) -> dict[str, Any] | None: + """Retrieve online info of a hybrid model.""" + + id, version = get_unit_id_and_version(name) + url = f"{API_URL}/hybrid_models/{id}" + if version is not None: + url += f"?model_version={version}" + response = requests.get(url) + + if response.status_code == 404: + print(f'Remote hybrid model "{name}" not found.') + return None + + if response.status_code != 200: + print(f"Error fetching remote hybrid model ({response.status_code}). Check the API URL.") + return None + + try: + info = response.json() + except JSONDecodeError: + print("Error decoding JSON. Check the API URL.") + return None + + return info + + +def retrieve_component_info(name: str) -> tuple[dict[str, Any] | None, str | None]: + """Retrieve online info of a component.""" + + id, version = get_unit_id_and_version(name) + url_physics_based = f"{API_URL}/components/physics_based/{id}" + url_machine_learning = f"{API_URL}/components/machine_learning/{id}" + if version is not None: + url_physics_based += f"?component_version={version}" + url_machine_learning += f"?component_version={version}" + + response = requests.get(url_physics_based) + component_type = "Physics-based" + + if response.status_code == 404: + response = requests.get(url_machine_learning) + component_type = "Machine learning" + + if response.status_code == 404: + print(f'Remote component "{name}" not found.') + return None, None + + if response.status_code != 200: + print(f"Error fetching remote component ({response.status_code}). Check the API URL.") + return None, None + + try: + info = response.json() + except JSONDecodeError: + print("Error decoding JSON. Check the API URL.") + return None, None + + return info, component_type From 2719e4d7645d501f2deea67d2f545fc429bef8d8 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 23 Oct 2025 14:57:54 +0200 Subject: [PATCH 12/20] feat: remove listing of local components --- frame_cli/config.py | 4 +++- frame_cli/listing.py | 2 +- frame_cli/main.py | 14 ++------------ 3 files changed, 6 insertions(+), 14 deletions(-) diff --git a/frame_cli/config.py b/frame_cli/config.py index 68c5088..a136371 100644 --- a/frame_cli/config.py +++ b/frame_cli/config.py @@ -1,10 +1,12 @@ """Configuration variables.""" +import contextlib import os from dotenv import load_dotenv -load_dotenv() +with contextlib.redirect_stdout(None), contextlib.redirect_stderr(None): + load_dotenv(verbose=False) LOGGING_LEVEL = os.getenv("FRAME_CLI_LOGGING_LEVEL", "INFO") API_URL = os.getenv("FRAME_CLI_API_URL", "https://frame-dev.epfl.ch/api/") diff --git a/frame_cli/listing.py b/frame_cli/listing.py index 21ab80d..afcf449 100644 --- a/frame_cli/listing.py +++ b/frame_cli/listing.py @@ -104,4 +104,4 @@ def list_remote_components(type: ComponentType | None) -> None: def list_local_components(type: ComponentType | None) -> None: """List installed components.""" # TODO: implement - print("This feature is not implemented yet.") + print("This feature is not implemented.") diff --git a/frame_cli/main.py b/frame_cli/main.py index 01ef51a..7d47dff 100644 --- a/frame_cli/main.py +++ b/frame_cli/main.py @@ -142,20 +142,10 @@ def list_models( @list_app.command("components") def list_components( - only_local: bool = typer.Option(False, help="List only locally installed hybrid models."), - only_remote: bool = typer.Option(False, help="List only remote hybrid models."), type: listing.ComponentType | None = typer.Option(None, help="Filter by component type."), ) -> None: - """List installed and remote components.""" - if only_local and only_remote: - print("--only-local and --only-remote options are mutually exclusive. Choose one.") - return - - if not only_local: - listing.list_remote_components(type) - - if not only_remote: - listing.list_local_components(type) + """List remote components.""" + listing.list_remote_components(type) @pull_app.command("model") From ad687249168637477b9b3d8b1024d50e5acf0784 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 23 Oct 2025 15:02:19 +0200 Subject: [PATCH 13/20] fix: typo in component pull command prints --- frame_cli/config.py | 2 +- frame_cli/pull.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/frame_cli/config.py b/frame_cli/config.py index a136371..9ee47a3 100644 --- a/frame_cli/config.py +++ b/frame_cli/config.py @@ -6,7 +6,7 @@ from dotenv import load_dotenv with contextlib.redirect_stdout(None), contextlib.redirect_stderr(None): - load_dotenv(verbose=False) + load_dotenv() LOGGING_LEVEL = os.getenv("FRAME_CLI_LOGGING_LEVEL", "INFO") API_URL = os.getenv("FRAME_CLI_API_URL", "https://frame-dev.epfl.ch/api/") diff --git a/frame_cli/pull.py b/frame_cli/pull.py index c1b6c2f..02a2818 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -58,7 +58,7 @@ def pull_component(name: str, destination: str | None) -> None: url = info.get("url", None) if url is None: - print("Error retrieving the model URL.") + print("Error retrieving the component URL.") return downloader = GitDownloader() From 25c2ed03506efe80cc140746a886d3b387a6a799 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 23 Oct 2025 15:07:52 +0200 Subject: [PATCH 14/20] chore: remove unimplemented functions --- frame_cli/listing.py | 6 ------ frame_cli/main.py | 12 ++---------- frame_cli/pull.py | 1 - frame_cli/show.py | 12 ------------ 4 files changed, 2 insertions(+), 29 deletions(-) diff --git a/frame_cli/listing.py b/frame_cli/listing.py index afcf449..31e278d 100644 --- a/frame_cli/listing.py +++ b/frame_cli/listing.py @@ -99,9 +99,3 @@ def list_remote_components(type: ComponentType | None) -> None: console = Console() console.print("") console.print(table) - - -def list_local_components(type: ComponentType | None) -> None: - """List installed components.""" - # TODO: implement - print("This feature is not implemented.") diff --git a/frame_cli/main.py b/frame_cli/main.py index 7d47dff..33517f5 100644 --- a/frame_cli/main.py +++ b/frame_cli/main.py @@ -102,25 +102,17 @@ def push( @show_app.command("model") def show_model( name: str = typer.Argument(..., help="Hybrid model name."), - local: bool = typer.Option(False, help="Show locally installed hybrid model info."), ) -> None: """Show information about a hybrid model.""" - if local: - show.show_local_model(name) - else: - show.show_remote_model(name) + show.show_remote_model(name) @show_app.command("component") def show_component( name: str = typer.Argument(..., help="Component name."), - local: bool = typer.Option(False, help="Show locally installed component info."), ) -> None: """Show information about a component.""" - if local: - show.show_local_component(name) - else: - show.show_remote_component(name) + show.show_remote_component(name) @list_app.command("models") diff --git a/frame_cli/pull.py b/frame_cli/pull.py index 02a2818..a6f5fc7 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -63,4 +63,3 @@ def pull_component(name: str, destination: str | None) -> None: downloader = GitDownloader() destination = downloader.download(url, destination) - # TODO: save info to local diff --git a/frame_cli/show.py b/frame_cli/show.py index 1188e42..3d5c091 100644 --- a/frame_cli/show.py +++ b/frame_cli/show.py @@ -58,12 +58,6 @@ def show_remote_model(name: str) -> None: print_pull_command(console, f"frame pull model {name}") -def show_local_model(name: str) -> None: - """Show information about a local hybrid model.""" - # TODO: implement - print("This feature is not implemented yet.") - - def show_remote_component(name: str) -> None: """Show information about a remote component.""" info, component_type = retrieve_component_info(name) @@ -92,9 +86,3 @@ def show_remote_component(name: str) -> None: console.print("") print_pull_command(console, f"frame pull component {name}") - - -def show_local_component(name: str) -> None: - """Show information about a local component.""" - # TODO: implement - print("This feature is not implemented yet.") From 8bf542f9726ab355dee01c94604b0e81fba8779a Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 23 Oct 2025 16:41:44 +0200 Subject: [PATCH 15/20] feat: download frame metadata file wheen pulliing model --- frame_cli/metadata.py | 25 +++++++++++-------------- frame_cli/pull.py | 34 ++++++++++++++++++++++++++++++---- 2 files changed, 41 insertions(+), 18 deletions(-) diff --git a/frame_cli/metadata.py b/frame_cli/metadata.py index 3d14335..addc445 100644 --- a/frame_cli/metadata.py +++ b/frame_cli/metadata.py @@ -37,25 +37,17 @@ class InvalidMetadataFileError(yaml.YAMLError): def get_metadata_file_path() -> str: - """Return the path to the FRAME metadata file in the current project. - - Raises: - NotInsideGitRepositoryError: If the current directory is not a Git repository. - """ + """Return the path to the FRAME metadata file in the current project.""" try: repo = Repo(search_parent_directories=True) - except InvalidGitRepositoryError: - raise NotInsideGitRepositoryError + return os.path.join(repo.working_tree_dir, FRAME_METADATA_FILE_NAME) - return os.path.join(repo.working_tree_dir, FRAME_METADATA_FILE_NAME) + except InvalidGitRepositoryError: + return os.path.join(os.getcwd(), FRAME_METADATA_FILE_NAME) def create_metadata_file() -> None: - """Create a new FRAME metadata file at the root of the current project. - - Raises: - NotInsideGitRepositoryError: If the current directory is not a Git repository. - """ + """Create a new FRAME metadata file at the root of the current project.""" metadata_file_path = get_metadata_file_path() if os.path.exists(metadata_file_path): @@ -73,11 +65,16 @@ def create_metadata_file() -> None: f.write(response.text) +def metadata_file_exists() -> bool: + """Check if the FRAME metadata file exists in the current project.""" + metadata_file_path = get_metadata_file_path() + return os.path.exists(metadata_file_path) + + def get_metadata() -> dict: """Return the FRAME metadata dictionary from the metadata file. Raises: - NotInsideGitRepositoryError: If the current directory is not a Git repository. YAMLError: If the metadata file is not a valid YAML file. """ metadata_file_path = get_metadata_file_path() diff --git a/frame_cli/pull.py b/frame_cli/pull.py index a6f5fc7..034e497 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -2,17 +2,22 @@ from typing import Any +import requests + from .downloaders.git import GitDownloader from .environment_managers.environment_manager import get_environment_manager from .info import add_local_model_info +from .metadata import metadata_file_exists from .utils import retrieve_model_info, retrieve_component_info +from .config import FRAME_METADATA_FILE_NAME, API_URL +from .logging import logger def setup_environment(destination: str, environment: dict[str, Any]) -> None: environment_manager = get_environment_manager(environment["type"]) if environment_manager is None: - print(f"Cannot setup environment of type {environment['type']}. Skipping...") + logger.info(f"Cannot setup environment of type {environment['type']}. Skipping...") return environment_manager.setup( @@ -21,6 +26,21 @@ def setup_environment(destination: str, environment: dict[str, Any]) -> None: ) +def pull_metadata_file(model_id: str, model_version: str | None, dir_path: str) -> None: + """Download FRAME metadata file.""" + url = f"{API_URL}/hybrid_models/metadata_file/{model_id}" + if model_version is not None: + url += f"?model_version={model_version}" + + response = requests.get(url) + if response.status_code != 200: + logger.error(f"Error retrieving FRAME metadata file. ({response.status_code}, {url})") + return + + with open(f"{dir_path}/{FRAME_METADATA_FILE_NAME}", "wb") as f: + f.write(response.content) + + def pull_model(name: str, destination: str | None) -> None: """Download a hybrid model and setup environment.""" info = retrieve_model_info(name) @@ -30,7 +50,7 @@ def pull_model(name: str, destination: str | None) -> None: url = info.get("url", None) if url is None: - print("Error retrieving the model URL.") + logger.error("Error retrieving the model URL.") return downloader = GitDownloader() @@ -39,7 +59,7 @@ def pull_model(name: str, destination: str | None) -> None: computational_environment = info.get("computational_environment", []) if computational_environment: - print("Setting up computational environment...") + logger.info("Setting up computational environment...") for environment in computational_environment: setup_environment(destination, environment) @@ -48,6 +68,12 @@ def pull_model(name: str, destination: str | None) -> None: for link in info["documentation"]: print(link) + if not metadata_file_exists(): + logger.info("Downloading FRAME metadata file...") + pull_metadata_file(info.get("id", ""), info.get("version", None), destination) + + logger.info("Done!") + def pull_component(name: str, destination: str | None) -> None: """Download a component.""" @@ -58,7 +84,7 @@ def pull_component(name: str, destination: str | None) -> None: url = info.get("url", None) if url is None: - print("Error retrieving the component URL.") + logger.error("Error retrieving the component URL.") return downloader = GitDownloader() From 60afdd6754ebacff7b45582ffa3f13e6fa0f4685 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 23 Oct 2025 17:06:01 +0200 Subject: [PATCH 16/20] chore: add requests timeout --- frame_cli/check.py | 4 ++-- frame_cli/config.py | 1 + frame_cli/downloaders/zenodo.py | 3 ++- frame_cli/info.py | 4 +++- frame_cli/listing.py | 6 +++--- frame_cli/metadata.py | 14 +++++++++----- frame_cli/pull.py | 6 +++--- frame_cli/utils.py | 8 ++++---- 8 files changed, 27 insertions(+), 19 deletions(-) diff --git a/frame_cli/check.py b/frame_cli/check.py index f0feb4b..9b8dc78 100644 --- a/frame_cli/check.py +++ b/frame_cli/check.py @@ -5,7 +5,7 @@ import requests -from .config import API_URL +from .config import API_URL, REQUESTS_TIMEOUT def check() -> None: @@ -20,7 +20,7 @@ def check_api() -> None: url = f"{API_URL}/healthz" try: - response = requests.get(url) + response = requests.get(url, timeout=REQUESTS_TIMEOUT) except Exception: print("API is not accessible. Check the API URL.") return diff --git a/frame_cli/config.py b/frame_cli/config.py index 9ee47a3..28167d1 100644 --- a/frame_cli/config.py +++ b/frame_cli/config.py @@ -21,3 +21,4 @@ FRAME_REPO_NAME = "frame-project" FRAME_REPO = f"{FRAME_REPO_OWNER}/{FRAME_REPO_NAME}" EXTERNAL_REFERENCES_PATH = os.path.join("backend", "api", "metadata_files", "external_references.yaml") +REQUESTS_TIMEOUT = 10 # seconds diff --git a/frame_cli/downloaders/zenodo.py b/frame_cli/downloaders/zenodo.py index a4744b9..bcbdc5d 100644 --- a/frame_cli/downloaders/zenodo.py +++ b/frame_cli/downloaders/zenodo.py @@ -18,6 +18,7 @@ ) from rich.status import Status +from ..config import REQUESTS_TIMEOUT from ..logging import logger from .downloader import Downloader @@ -56,7 +57,7 @@ def download( url = f"https://{host}/api/records/{dataset_id}" # Scan record - response = requests.get(url) + response = requests.get(url, timeout=REQUESTS_TIMEOUT) _check_request_response(response, f'getting Zenodo record "{dataset_id}"') record = response.json() diff --git a/frame_cli/info.py b/frame_cli/info.py index 6f36a23..0b1d2ed 100644 --- a/frame_cli/info.py +++ b/frame_cli/info.py @@ -160,7 +160,9 @@ def get_github_token(use_new_token: bool = False) -> str: global_info = get_global_info() if "github_token" not in global_info or use_new_token: - print("Create a GitHub token with `repo` scope: https://github.com/settings/tokens/new") + print( + "Use the following link to create a classical GitHub token with `repo` scope: https://github.com/settings/tokens/new" + ) github_token = input("GitHub token: ") global_info["github_token"] = github_token set_global_info(global_info) diff --git a/frame_cli/listing.py b/frame_cli/listing.py index 31e278d..10250c4 100644 --- a/frame_cli/listing.py +++ b/frame_cli/listing.py @@ -8,7 +8,7 @@ from rich.console import Console from rich.table import Table -from .config import API_URL +from .config import API_URL, REQUESTS_TIMEOUT from .info import get_local_models_info @@ -20,7 +20,7 @@ class ComponentType(str, Enum): def list_remote_models() -> None: """List remote hybrid models.""" url = f"{API_URL}/hybrid_models/ids/" - response = requests.get(url) + response = requests.get(url, timeout=REQUESTS_TIMEOUT) if response.status_code != 200: print(f"Error fetching remote hybrid models ({response.status_code}). Check the API URL.") @@ -72,7 +72,7 @@ def list_remote_components(type: ComponentType | None) -> None: url += "physics_based_ids/" case ComponentType.machine_learning: url += "machine_learning_ids/" - response = requests.get(url) + response = requests.get(url, timeout=REQUESTS_TIMEOUT) if response.status_code != 200: print(f"Error fetching remote components ({response.status_code}). Check the API URL.") diff --git a/frame_cli/metadata.py b/frame_cli/metadata.py index addc445..c94cebd 100644 --- a/frame_cli/metadata.py +++ b/frame_cli/metadata.py @@ -36,14 +36,18 @@ class InvalidMetadataFileError(yaml.YAMLError): """Invalid metadata file.""" -def get_metadata_file_path() -> str: +def get_metadata_file_path(base_dir: str | None = None) -> str: """Return the path to the FRAME metadata file in the current project.""" try: repo = Repo(search_parent_directories=True) - return os.path.join(repo.working_tree_dir, FRAME_METADATA_FILE_NAME) + metadata_file_path = os.path.join(repo.working_tree_dir, FRAME_METADATA_FILE_NAME) except InvalidGitRepositoryError: - return os.path.join(os.getcwd(), FRAME_METADATA_FILE_NAME) + if base_dir is None: + base_dir = os.getcwd() + metadata_file_path = os.path.join(base_dir, FRAME_METADATA_FILE_NAME) + + return metadata_file_path def create_metadata_file() -> None: @@ -65,9 +69,9 @@ def create_metadata_file() -> None: f.write(response.text) -def metadata_file_exists() -> bool: +def metadata_file_exists(base_dir: str | None = None) -> bool: """Check if the FRAME metadata file exists in the current project.""" - metadata_file_path = get_metadata_file_path() + metadata_file_path = get_metadata_file_path(base_dir) return os.path.exists(metadata_file_path) diff --git a/frame_cli/pull.py b/frame_cli/pull.py index 034e497..20972b9 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -9,7 +9,7 @@ from .info import add_local_model_info from .metadata import metadata_file_exists from .utils import retrieve_model_info, retrieve_component_info -from .config import FRAME_METADATA_FILE_NAME, API_URL +from .config import FRAME_METADATA_FILE_NAME, API_URL, REQUESTS_TIMEOUT from .logging import logger @@ -32,7 +32,7 @@ def pull_metadata_file(model_id: str, model_version: str | None, dir_path: str) if model_version is not None: url += f"?model_version={model_version}" - response = requests.get(url) + response = requests.get(url, timeout=REQUESTS_TIMEOUT) if response.status_code != 200: logger.error(f"Error retrieving FRAME metadata file. ({response.status_code}, {url})") return @@ -68,7 +68,7 @@ def pull_model(name: str, destination: str | None) -> None: for link in info["documentation"]: print(link) - if not metadata_file_exists(): + if not metadata_file_exists(destination): logger.info("Downloading FRAME metadata file...") pull_metadata_file(info.get("id", ""), info.get("version", None), destination) diff --git a/frame_cli/utils.py b/frame_cli/utils.py index 7b52cce..f100ed6 100644 --- a/frame_cli/utils.py +++ b/frame_cli/utils.py @@ -4,7 +4,7 @@ import requests from typing import Any -from .config import API_URL +from .config import API_URL, REQUESTS_TIMEOUT def get_unit_id_and_version(name: str) -> tuple[str, str | None]: @@ -26,7 +26,7 @@ def retrieve_model_info(name: str) -> dict[str, Any] | None: url = f"{API_URL}/hybrid_models/{id}" if version is not None: url += f"?model_version={version}" - response = requests.get(url) + response = requests.get(url, timeout=REQUESTS_TIMEOUT) if response.status_code == 404: print(f'Remote hybrid model "{name}" not found.') @@ -55,11 +55,11 @@ def retrieve_component_info(name: str) -> tuple[dict[str, Any] | None, str | Non url_physics_based += f"?component_version={version}" url_machine_learning += f"?component_version={version}" - response = requests.get(url_physics_based) + response = requests.get(url_physics_based, timeout=REQUESTS_TIMEOUT) component_type = "Physics-based" if response.status_code == 404: - response = requests.get(url_machine_learning) + response = requests.get(url_machine_learning, timeout=REQUESTS_TIMEOUT) component_type = "Machine learning" if response.status_code == 404: From adfb8cfcc128b56e74c61034b9bf2f2e6fe07be3 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 23 Oct 2025 17:18:31 +0200 Subject: [PATCH 17/20] test: add tests running all subcommands help --- tests/test_commands.py | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) create mode 100644 tests/test_commands.py diff --git a/tests/test_commands.py b/tests/test_commands.py new file mode 100644 index 0000000..bf6f9d9 --- /dev/null +++ b/tests/test_commands.py @@ -0,0 +1,27 @@ +import pytest +from typer.testing import CliRunner + +from frame_cli.main import app + +runner = CliRunner() + + +@pytest.mark.parametrize( + "subcommand", + [ + "", + "check", + "version", + "update", + "init", + "validate", + "push", + "list", + "show", + "pull", + ], +) +def test_help(subcommand: str): + """Test help messages for CLI commands.""" + result = runner.invoke(app, [*subcommand.split(), "--help"]) + assert result.exit_code == 0 From ec6d18575de3956d1d73e60f25510c1398e122d2 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 6 Nov 2025 08:56:02 +0100 Subject: [PATCH 18/20] chore: update pre-commit versions --- .gitignore | 2 +- .pre-commit-config.yaml | 14 +++++++------- docs/conf.py | 2 +- frame_cli/check.py | 2 +- .../environment_managers/environment_manager.py | 2 +- frame_cli/info.py | 2 +- frame_cli/init.py | 4 ++-- frame_cli/listing.py | 2 +- frame_cli/main.py | 14 +++++++++++--- frame_cli/metadata.py | 10 +++++----- frame_cli/pull.py | 6 +++--- frame_cli/push.py | 4 ++-- frame_cli/show.py | 2 +- frame_cli/utils.py | 3 ++- tests/test_environment_managers.py | 2 +- 15 files changed, 40 insertions(+), 31 deletions(-) diff --git a/.gitignore b/.gitignore index 6959314..b897915 100644 --- a/.gitignore +++ b/.gitignore @@ -3,7 +3,7 @@ build coverage.xml *.egg-info dist -.env +.env* lcov.info __pycache__ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 85272c8..60ef508 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -5,33 +5,33 @@ default_install_hook_types: - commit-msg repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v5.0.0 + rev: v6.0.0 hooks: - id: trailing-whitespace - id: end-of-file-fixer - id: check-json - id: check-yaml - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.15.0 + rev: v1.18.2 hooks: - id: mypy additional_dependencies: - types-pyyaml - types-requests - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.11.0 + rev: v0.14.3 hooks: - - id: ruff # Linter - args: [ --fix ] + - id: ruff-check # Linter + args: [ --fix, --select, "I" ] - id: ruff-format # Formatter - repo: https://github.com/codespell-project/codespell - rev: v2.3.0 + rev: v2.4.1 hooks: - id: codespell additional_dependencies: - tomli - repo: https://github.com/compilerla/conventional-pre-commit - rev: v3.6.0 + rev: v4.3.0 hooks: - id: conventional-pre-commit stages: [commit-msg] diff --git a/docs/conf.py b/docs/conf.py index 39dab8b..4215684 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -2,9 +2,9 @@ # -- Path setup -------------------------------------------------------------- -from datetime import datetime import os import sys +from datetime import datetime import frame_cli diff --git a/frame_cli/check.py b/frame_cli/check.py index 9b8dc78..5047c8e 100644 --- a/frame_cli/check.py +++ b/frame_cli/check.py @@ -1,7 +1,7 @@ """Check installation and API access.""" -from json import JSONDecodeError import shutil +from json import JSONDecodeError import requests diff --git a/frame_cli/environment_managers/environment_manager.py b/frame_cli/environment_managers/environment_manager.py index adc9429..ef234c7 100644 --- a/frame_cli/environment_managers/environment_manager.py +++ b/frame_cli/environment_managers/environment_manager.py @@ -1,10 +1,10 @@ """Module containing the EnvironmentManager abstract base class.""" -from abc import ABC, abstractmethod import importlib import inspect import os import pkgutil +from abc import ABC, abstractmethod class EnvironmentManager(ABC): diff --git a/frame_cli/info.py b/frame_cli/info.py index 0b1d2ed..572f57a 100644 --- a/frame_cli/info.py +++ b/frame_cli/info.py @@ -5,7 +5,7 @@ import yaml from .config import FRAME_DIR_NAME, INFO_FILE_NAME -from .metadata import get_model_name, get_model_url, get_metadata_file_path +from .metadata import get_metadata_file_path, get_model_name, get_model_url def get_home_info_path() -> str: diff --git a/frame_cli/init.py b/frame_cli/init.py index 5a29a4e..549e9a9 100644 --- a/frame_cli/init.py +++ b/frame_cli/init.py @@ -2,10 +2,10 @@ from .config import FRAME_METADATA_FILE_NAME from .metadata import ( - create_metadata_file, - NotInsideGitRepositoryError, MetadataFileAlreadyExistsError, MetadataTemplateFetchError, + NotInsideGitRepositoryError, + create_metadata_file, ) diff --git a/frame_cli/listing.py b/frame_cli/listing.py index 10250c4..f2f7fc2 100644 --- a/frame_cli/listing.py +++ b/frame_cli/listing.py @@ -1,8 +1,8 @@ """Module for `frame list` commands.""" +import os from enum import Enum from json import JSONDecodeError -import os import requests from rich.console import Console diff --git a/frame_cli/main.py b/frame_cli/main.py index 33517f5..538ca76 100644 --- a/frame_cli/main.py +++ b/frame_cli/main.py @@ -4,13 +4,21 @@ from . import ( __version__, - check as check_module, - init as init_module, listing, metadata, pull, - push as push_module, show, +) +from . import ( + check as check_module, +) +from . import ( + init as init_module, +) +from . import ( + push as push_module, +) +from . import ( update as update_module, ) diff --git a/frame_cli/metadata.py b/frame_cli/metadata.py index c94cebd..9afa676 100644 --- a/frame_cli/metadata.py +++ b/frame_cli/metadata.py @@ -1,16 +1,15 @@ """Module for manipulating FRAME metadata files.""" import os +from typing import TYPE_CHECKING -from git import Repo, InvalidGitRepositoryError import requests -from typing import TYPE_CHECKING import yaml +from git import InvalidGitRepositoryError, Repo from .config import FRAME_METADATA_FILE_NAME, FRAME_METADATA_TEMPLATE_URL from .logging import logger -from .update import install_api_package, CannotInstallFRAMEAPIError - +from .update import CannotInstallFRAMEAPIError, install_api_package if TYPE_CHECKING: from api.models.metadata_file import MetadataFromFile @@ -117,8 +116,9 @@ def get_model_url() -> str | None: def show_fair_level(metadata: "MetadataFromFile") -> None: from operator import attrgetter + from api.models.hybrid_model import HybridModel - from api.services.metadata import compute_fair_level, FAIR_LEVEL_PROPERTIES + from api.services.metadata import FAIR_LEVEL_PROPERTIES, compute_fair_level model = HybridModel( **metadata.hybrid_model.model_dump(), diff --git a/frame_cli/pull.py b/frame_cli/pull.py index 20972b9..ef6b5b3 100644 --- a/frame_cli/pull.py +++ b/frame_cli/pull.py @@ -4,13 +4,13 @@ import requests +from .config import API_URL, FRAME_METADATA_FILE_NAME, REQUESTS_TIMEOUT from .downloaders.git import GitDownloader from .environment_managers.environment_manager import get_environment_manager from .info import add_local_model_info -from .metadata import metadata_file_exists -from .utils import retrieve_model_info, retrieve_component_info -from .config import FRAME_METADATA_FILE_NAME, API_URL, REQUESTS_TIMEOUT from .logging import logger +from .metadata import metadata_file_exists +from .utils import retrieve_component_info, retrieve_model_info def setup_environment(destination: str, environment: dict[str, Any]) -> None: diff --git a/frame_cli/push.py b/frame_cli/push.py index bb27529..61e9e02 100644 --- a/frame_cli/push.py +++ b/frame_cli/push.py @@ -2,14 +2,14 @@ import os import subprocess -import yaml import git import github +import yaml from github.AuthenticatedUser import AuthenticatedUser from github.Repository import Repository as GithubRepository -from .config import FRAME_REPO, FRAME_REPO_NAME, EXTERNAL_REFERENCES_PATH +from .config import EXTERNAL_REFERENCES_PATH, FRAME_REPO, FRAME_REPO_NAME from .info import get_github_token, get_home_info_path, get_local_model_info from .logging import logger from .metadata import validate as validate_metadata_file diff --git a/frame_cli/show.py b/frame_cli/show.py index 3d5c091..c5d32ea 100644 --- a/frame_cli/show.py +++ b/frame_cli/show.py @@ -3,7 +3,7 @@ from rich.console import Console from rich.panel import Panel -from .utils import retrieve_model_info, retrieve_component_info +from .utils import retrieve_component_info, retrieve_model_info def print_keywords(console: Console, keywords: list[str], style: str) -> None: diff --git a/frame_cli/utils.py b/frame_cli/utils.py index f100ed6..741fbb5 100644 --- a/frame_cli/utils.py +++ b/frame_cli/utils.py @@ -1,9 +1,10 @@ """Set of functions used in multiple other modules.""" from json import JSONDecodeError -import requests from typing import Any +import requests + from .config import API_URL, REQUESTS_TIMEOUT diff --git a/tests/test_environment_managers.py b/tests/test_environment_managers.py index 94cf973..4946d5c 100644 --- a/tests/test_environment_managers.py +++ b/tests/test_environment_managers.py @@ -1,8 +1,8 @@ import os +import subprocess from pathlib import Path import pytest -import subprocess from frame_cli.environment_managers.environment_manager import get_environment_manager From 190caae12a25a394683e21679fad066c026362ed Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 6 Nov 2025 09:01:57 +0100 Subject: [PATCH 19/20] chore: replace logger with print statements in validate command --- frame_cli/metadata.py | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/frame_cli/metadata.py b/frame_cli/metadata.py index 9afa676..4450b15 100644 --- a/frame_cli/metadata.py +++ b/frame_cli/metadata.py @@ -129,10 +129,10 @@ def show_fair_level(metadata: "MetadataFromFile") -> None: fair_level = compute_fair_level(model) max_fair_level = len(FAIR_LEVEL_PROPERTIES) - logger.info(f"FAIR level of the hybrid model: {fair_level}/{max_fair_level}") + print(f"FAIR level of the hybrid model: {fair_level}/{max_fair_level}") if fair_level < max_fair_level: - logger.info( + print( f"To get to a FAIR level of {fair_level + 1}/{max_fair_level}," " make sure to fill in all the following properties: " ) @@ -149,12 +149,12 @@ def show_fair_level(metadata: "MetadataFromFile") -> None: except AttributeError: filled = False - logger.info(f"- {prop} ({'OK' if filled else 'MISSING'})") + print(f"- {prop} ({'OK' if filled else 'MISSING'})") - logger.info("More details about FAIR levels on https://frame.epfl.ch/#/about") + print("More details about FAIR levels on https://frame.epfl.ch/#/about\n") else: - logger.info("Well done!") + print("Well done!") def validate() -> bool: @@ -164,11 +164,11 @@ def validate() -> bool: metadata = get_metadata() except MetadataFileNotFoundError: - logger.info("Metadata file not found. Please run `frame init` to create one.") + print("Metadata file not found. Please run `frame init` to create one.") return False except InvalidMetadataFileError: - logger.info("Invalid yaml file.") + print("Invalid yaml file.") return False try: @@ -177,24 +177,24 @@ def validate() -> bool: try: install_api_package() except CannotInstallFRAMEAPIError: - logger.info("Error installing FRAME API package. Please check your internet connection.") + print("Error installing FRAME API package. Please check your internet connection.") return False from api.models.metadata_file import MetadataFromFile try: metadata = MetadataFromFile(**metadata) except ValidationError as e: - logger.info("Validation error in metadata file:") + print("Validation error in metadata file:") for error in e.errors(): - logger.info(f"- {error['loc']}: {error['msg']}") + print(f"- {error['loc']}: {error['msg']}") return False except Exception as e: - logger.info(f"Unexpected error during validation: {e}") + print(f"Unexpected error during validation: {e}") return False try: show_fair_level(metadata) except ImportError: - logger.info("Could not compute the FAIR level of the hybrid model. Please update FRAME CLI.") + print("Could not compute the FAIR level of the hybrid model. Please update FRAME CLI.") return True From 16f14658acc2da2b55f38af467df2f43368429d4 Mon Sep 17 00:00:00 2001 From: Son Pham-Ba Date: Thu, 6 Nov 2025 11:21:51 +0100 Subject: [PATCH 20/20] feat: push commands copies metadata file to frame repo --- frame_cli/config.py | 4 ++- frame_cli/info.py | 2 +- frame_cli/push.py | 86 ++++++++++++++++++++++++++++++++++++++++----- 3 files changed, 81 insertions(+), 11 deletions(-) diff --git a/frame_cli/config.py b/frame_cli/config.py index 28167d1..055abb4 100644 --- a/frame_cli/config.py +++ b/frame_cli/config.py @@ -20,5 +20,7 @@ FRAME_REPO_OWNER = "CHANGE-EPFL" FRAME_REPO_NAME = "frame-project" FRAME_REPO = f"{FRAME_REPO_OWNER}/{FRAME_REPO_NAME}" -EXTERNAL_REFERENCES_PATH = os.path.join("backend", "api", "metadata_files", "external_references.yaml") +FRAME_PYTHON_VERSION = "3.10" +METADATA_DIR_PATH = os.path.join("backend", "api", "metadata_files") +EXTERNAL_REFERENCES_PATH = os.path.join(METADATA_DIR_PATH, "external_references.yaml") REQUESTS_TIMEOUT = 10 # seconds diff --git a/frame_cli/info.py b/frame_cli/info.py index 572f57a..3ea1226 100644 --- a/frame_cli/info.py +++ b/frame_cli/info.py @@ -161,7 +161,7 @@ def get_github_token(use_new_token: bool = False) -> str: if "github_token" not in global_info or use_new_token: print( - "Use the following link to create a classical GitHub token with `repo` scope: https://github.com/settings/tokens/new" + "Use the following link to create a classical GitHub token with `repo` and `workflow` scopes: https://github.com/settings/tokens/new" ) github_token = input("GitHub token: ") global_info["github_token"] = github_token diff --git a/frame_cli/push.py b/frame_cli/push.py index 61e9e02..e58376c 100644 --- a/frame_cli/push.py +++ b/frame_cli/push.py @@ -1,6 +1,7 @@ """Module for `frame push` command.""" import os +import shutil import subprocess import git @@ -8,10 +9,12 @@ import yaml from github.AuthenticatedUser import AuthenticatedUser from github.Repository import Repository as GithubRepository +from rich.prompt import Prompt -from .config import EXTERNAL_REFERENCES_PATH, FRAME_REPO, FRAME_REPO_NAME +from .config import EXTERNAL_REFERENCES_PATH, FRAME_PYTHON_VERSION, FRAME_REPO, FRAME_REPO_NAME, METADATA_DIR_PATH from .info import get_github_token, get_home_info_path, get_local_model_info from .logging import logger +from .metadata import get_metadata_file_path from .metadata import validate as validate_metadata_file @@ -23,6 +26,10 @@ class ModelAlreadyTrackedError(Exception): """Exception raised when the model is already tracked by the FRAME repository.""" +class ModelAlreadyIntegratedError(Exception): + """Exception raised when the model is already integrated in the FRAME repository.""" + + def create_frame_fork(upstream_repo: GithubRepository, github_user: AuthenticatedUser) -> GithubRepository: return github_user.create_fork(upstream_repo) @@ -78,7 +85,7 @@ def generate_branch_name() -> str: return f"feat-{model_name}" -def add_model_to_local_frame_repo(local_repo: git.Repo): +def add_model_to_local_frame_repo(local_repo: git.Repo, as_reference: bool) -> str: branch_name = generate_branch_name() logger.debug("Checking out main branch") @@ -93,6 +100,13 @@ def add_model_to_local_frame_repo(local_repo: git.Repo): logger.debug(f"Checking out branch {branch_name}") local_repo.git.checkout(branch_name) + if as_reference: + return add_model_to_local_frame_repo_as_reference(local_repo) + else: + return add_model_to_local_frame_repo_as_integrated(local_repo) + + +def add_model_to_local_frame_repo_as_reference(local_repo: git.Repo) -> str: external_references_path = os.path.join(str(local_repo.working_tree_dir), EXTERNAL_REFERENCES_PATH) with open(external_references_path, "r") as file: external_references = yaml.safe_load(file) or [] @@ -107,7 +121,33 @@ def add_model_to_local_frame_repo(local_repo: git.Repo): local_repo.git.add(EXTERNAL_REFERENCES_PATH) model_name = get_model_name() - local_repo.git.commit(m=f"feat(metadata): add {model_name} to external references") + commit_message = f'feat(metadata): add "{model_name}" to external references' + local_repo.git.commit(m=commit_message) + return commit_message + + +def add_model_to_local_frame_repo_as_integrated(local_repo: git.Repo) -> str: + model_name = get_model_name() + new_metadata_path = os.path.join(str(local_repo.working_tree_dir), METADATA_DIR_PATH, f"{model_name}.yaml") + replace = False + + if os.path.exists(new_metadata_path): + with open(new_metadata_path, "r") as file: + existing_metadata = yaml.safe_load(file) + + print(f"A metadata file for a model with id '{model_name}' already exists in the FRAME repository.\n") + print("Model full name:", existing_metadata.get("hybrid_model", {}).get("name", "N/A")) + print(f"Contributors: {', '.join(existing_metadata.get('hybrid_model', {}).get('contributors', []))}") + replace = Prompt.ask("\nDo you want to replace it?", choices=["yes", "no"], default="no") == "yes" + if not replace: + raise ModelAlreadyIntegratedError("Model metadata file already exists in FRAME repository.") + + local_metadata_path = get_metadata_file_path() + shutil.copyfile(local_metadata_path, new_metadata_path) + local_repo.git.add(os.path.join(METADATA_DIR_PATH, f"{model_name}.yaml")) + commit_message = f"feat(metadata): {'update' if replace else 'add'} {model_name} metadata file" + local_repo.git.commit(m=commit_message) + return commit_message def push_to_frame_fork(local_repo: git.Repo): @@ -115,14 +155,14 @@ def push_to_frame_fork(local_repo: git.Repo): local_repo.git.push("origin", generate_branch_name(), force_with_lease=True) -def create_pull_request(github_client: github.Github, github_user: AuthenticatedUser): +def create_pull_request(github_client: github.Github, github_user: AuthenticatedUser, message: str): branch_name = generate_branch_name() upstream_repo = github_client.get_repo(FRAME_REPO) logger.info(f"Creating pull request from {github_user.login}:{branch_name} to {upstream_repo.full_name}:main") try: pull_request = upstream_repo.create_pull( - title=f'feat(metadata): Add "{get_model_name()}" to external references', + title=message, body="", head=f"{github_user.login}:{branch_name}", base="main", @@ -143,7 +183,7 @@ def validate_integration() -> bool: frame_api_path = os.path.join(get_home_info_path(), FRAME_REPO_NAME, "backend") logger.info("Creating virtual environment using uv") - ret = subprocess.run("uv venv".split(), cwd=frame_api_path, capture_output=True) + ret = subprocess.run(f"uv venv --python {FRAME_PYTHON_VERSION}".split(), cwd=frame_api_path, capture_output=True) if ret.returncode != 0: print( "Error creating virtual environment using uv. Please check that uv and a recent version of Python are installed." @@ -151,13 +191,16 @@ def validate_integration() -> bool: return False logger.info("Installing dependencies") + env_virtual_env = os.environ.pop("VIRTUAL_ENV", "") # Ensure we use correct uv's virtual environment ret = subprocess.run("uv pip install -e .[test]".split(), cwd=frame_api_path, capture_output=True) if ret.returncode != 0: print("Error installing dependencies.") + os.environ["VIRTUAL_ENV"] = env_virtual_env return False logger.info("Running integration tests") ret = subprocess.run("uv run pytest --disable-warnings".split(), cwd=frame_api_path) + os.environ["VIRTUAL_ENV"] = env_virtual_env if ret.returncode != 0: print("Integration tests failed.") return False @@ -183,14 +226,39 @@ def push(use_new_token: bool = False): ) return + add_as_reference = ( + Prompt.ask( + "Where do you want the FRAME metadata file to be pushed?\n" + "1: Add to FRAME repository (recommended, default).\n" + "2: Keep in your model's repository and only link it in FRAME. You need push access to the model's repository.", + choices=["1", "2"], + default="1", + ) + == "2" + ) + + if add_as_reference: + if ( + Prompt.ask( + "Have you already pushed the FRAME metadata file to your model's repository?", + choices=["yes", "no"], + ) + == "no" + ): + print("Please push the FRAME metadata file to your model's repository and try again.") + return + local_repo = get_local_frame_repo(github_client, github_user) try: - add_model_to_local_frame_repo(local_repo) + commit_message = add_model_to_local_frame_repo(local_repo, add_as_reference) except MissingModelURLError: print("Model URL is empty. Please set the model URL to the remote repository URL in the metadata file.") return except ModelAlreadyTrackedError: - print("Model URL already tracked in external references.") + print("Model URL already tracked in FRAME's external references. No changes made.") + return + except ModelAlreadyIntegratedError: + print("Model already integrated in FRAME repository. No changes made.") return if not validate_integration(): @@ -198,4 +266,4 @@ def push(use_new_token: bool = False): return push_to_frame_fork(local_repo) - create_pull_request(github_client, github_user) + create_pull_request(github_client, github_user, commit_message)