Podman support - requested enhancement

[jvhagey]

Per request from NY

Is your feature request related to a problem? Please describe.
Add support for podman

Describe the solution you'd like
NY needs to run phx on Podman

[NoForkJustCommit]

Adding more details. This is the error reported:

Command used to run phoenix: nextflow run phoenix-2.1.1/main.nf -profile podman -entry PHOENIX --input samplesheet.csv --kraken2db Kraken_database/k2_standard_08gb_20240904.tar.gz

Errors:

Execution cancelled -- Finishing pending tasks before exit
-[cdcgov/phoenix] Pipeline completed with errors-
ERROR ~ Error executing process > 'PHOENIX:PHOENIX_EXTERNAL:ASSET_CHECK (1)'
Caused by:
Process PHOENIX:PHOENIX_EXTERNAL:ASSET_CHECK (1) terminated with an error exit status (125)
Command executed:
if [[ REFSEQ_20240124_Bacteria_complete.msh.gz = *.gz ]]
then
pigz -vdf REFSEQ_20240124_Bacteria_complete.msh.gz
else
:
fi
if [[ mlst_db_20240124.tar.gz = *.tar.gz ]]
then
tar --use-compress-program="pigz -vdf" -xf mlst_db_20240124.tar.gz
else
:
fi
if [[ k2_standard_08gb_20240904.tar.gz = *.tar.gz ]]
then
folder_name=$(basename k2_standard_08gb_20240904.tar.gz .tar.gz)
tar --use-compress-program="pigz -vdf" -xf k2_standard_08gb_20240904.tar.gz
mkdir ${folder_name}_folder
mv *.kmer_distrib ${folder_name}_folder
mv *.k2d ${folder_name}_folder
mv seqid2taxid.map ${folder_name}_folder
mv inspect.txt ${folder_name}_folder
mv ktaxonomy.tsv ${folder_name}_folder
else
folder_name=$(basename k2_standard_08gb_20240904.tar.gz .tar.gz)
mv ${folder_name} ${folder_name}_folder
fi
cat <<-END_VERSIONS > versions.yml
"PHOENIX:PHOENIX_EXTERNAL:ASSET_CHECK":
phoenix_base_container_tag: base_v2.1.0
phoenix_base_container: sha256:f0304fe170ee359efd2073dcdb4666dddb96ea0b79441b1d2cb1ddc794de4943
END_VERSIONS
Command exit status:
125
Command output:
(empty)
Command error:
Trying to pull quay.io/jvhagey/phoenix@sha256:f0304fe170ee359efd2073dcdb4666dddb96ea0b79441b1d2cb1ddc794de4943...
Error: determining manifest MIME type for docker://quay.io/jvhagey/phoenix@sha256:f0304fe170ee359efd2073dcdb4666dddb96ea0b79441b1d2cb1ddc794de4943: Manifest does not match provided manifest digest sha256:f0304fe170ee359efd2073dcdb4666dddb96ea0b79441b1d2cb1ddc794de4943