`renee build` failes at `tin_ref` when building mmul 10 genome

[kelly-sovacool]

with no useful information in the log file 🤔

see /data/CCBR_Pipeliner/debug_data/

reported by @kcgfarb

[kelly-sovacool]

running just the tin_ref rule doesn't help

snakemake --snakefile '/data/CCBR_Pipeliner/debug_data/renee_build/workflow/rules/build.smk' --target-jobs 'tin_ref:' --allowed-rules 'tin_ref' --cores 'all' --attempt 1 --force-use-threads  --resources 'mem_mb=1566' 'mem_mib=1494' 'disk_mb=1566' 'disk_mib=1494' --wait-for-files '/gpfs/gsfs10/users/CCBR_Pipeliner/debug_data/renee_build/.snakemake/tmp.3btyop3j' '/data/CCBR_Pipeliner/debug_data/renee_build/genomic.gtf.reformat.gtf' --force --keep-target-files --keep-remote --max-inventory-time 0 --nocolor --notemp --no-hooks --nolock --ignore-incomplete --rerun-triggers 'mtime' --skip-script-cleanup  --conda-frontend 'mamba' --use-singularity  --singularity-args "'-B /gpfs/gsfs10/users/CCBR_Pipeliner/debug_data,/data/CCBR_Pipeliner/debug_data/renee_build,/lscratch'" --wrapper-prefix 'https://github.com/snakemake/snakemake-wrappers/raw/' --configfiles '/data/CCBR_Pipeliner/debug_data/renee_build/config/build.yml' --printshellcmds  --latency-wait 120 --scheduler 'greedy' --scheduler-solver-path '/usr/local/apps/snakemake/conda/envs/7.32.4/bin' --default-resources 'mem_mb=max(2*input.size_mb, 1000)' 'disk_mb=max(2*input.size_mb, 1000)' 'tmpdir=system_tmpdir' --directory '/data/CCBR_Pipeliner/debug_data/renee_build'

Config file config/build.yml is extended by additional config specified via the command line.
Waiting at most 120 seconds for missing files.
Missing files after 120 seconds. This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait:
/gpfs/gsfs10/users/CCBR_Pipeliner/debug_data/renee_build/.snakemake/tmp.3btyop3j