octopus variant caller does not use available cores & memory

[kelly-sovacool]

Description of the bug

Octopus is taking more than 24 hours to complete. It has been given 18 cores & 96G memory, but it isn't utilizing those resources.

Command used and terminal output

./bin/logan run --genome hg38 --sample_sheet /data/CCBR/projects/techDev/logan_pairs.txt --fastq_file_input /data/CCBR/projects/techDev/logan_fastq_input.txt --vc --qc false --callers octopus --no_tonly

Relevant files

System information

biowulf

[kelly-sovacool]

on a subsequent re-run it completed in 20 hrs