Hi,
Thank you for your excellent work on Surfdock! I have a question when running eval_samples.sh. How can I resolve it?
-------------------------------- Step3 : Get Pocket ESM Embedding ----------------------------
Traceback (most recent call last):
File "/sharedata/home/lyf/SurfDock/datasets/esm_embedding_preparation.py", line 51, in
df = pd.read_csv(args.protein_ligand_csv)
File "/sharedata/home/lyf/miniconda3/envs/SurfDock/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 948, in read_csv
return _read(filepath_or_buffer, kwds)
File "/sharedata/home/lyf/miniconda3/envs/SurfDock/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 611, in _read
parser = TextFileReader(filepath_or_buffer, **kwds)
File "/sharedata/home/lyf/miniconda3/envs/SurfDock/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 1448, in init
self._engine = self._make_engine(f, self.engine)
File "/sharedata/home/lyf/miniconda3/envs/SurfDock/lib/python3.10/site-packages/pandas/io/parsers/readers.py", line 1723, in _make_engine
return mapping[engine](f, **self.options)
File "/sharedata/home/lyf/miniconda3/envs/SurfDock/lib/python3.10/site-packages/pandas/io/parsers/c_parser_wrapper.py", line 93, in init
self._reader = parsers.TextReader(src, **kwds)
File "parsers.pyx", line 586, in pandas._libs.parsers.TextReader.cinit
pandas.errors.EmptyDataError: No columns to parse from file