Skip to content

FLAIR stranding can be improved #600

@cafelton

Description

@cafelton

FLAIR in align and transcriptome attempts to set read strand based on ts tag from minimap and polyA tail sequence presence. However if tag and polyA tail not present (can happen in unspliced or spliced reads), arbitrarily sets strand to alignment strand.
Is there a way to pass through ambiguity in unstranded libraries?

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions