Error in flair correct

[akinaoh]

Hi

When I run flair correct, I ve got an error below:

Traceback (most recent call last):
File "/home/ah1/bin/miniconda3/envs/flair/bin/flair", line 7, in
sys.exit(main())
^^^^^^
File "/home/ah1/bin/miniconda3/envs/flair/lib/python3.12/site-packages/flair/flair_cli.py", line 50, in main
corrected_reads = correct()
^^^^^^^^^
File "/home/ah1/bin/miniconda3/envs/flair/lib/python3.12/site-packages/flair/flair_correct.py", line 146, in correct
tempoutfile.close()
^^^^^^^^^^^
UnboundLocalError: cannot access local variable 'tempoutfile' where it is not associated with a value

Does anyone know how to solve this ?
Thank you in advance.

[diekhans]

Just comment out the close until we can fix it

…

On Mon, 22 Sep 2025 at 23:05, akinaoh ***@***.***> wrote: Hi When I run flair correct, I ve got an error below: Traceback (most recent call last): File "/home/ah1/bin/miniconda3/envs/flair/bin/flair", line 7, in sys.exit(main()) ^^^^^^ File "/home/ah1/bin/miniconda3/envs/flair/lib/python3.12/site-packages/flair/flair_cli.py", line 50, in main corrected_reads = correct() ^^^^^^^^^ File "/home/ah1/bin/miniconda3/envs/flair/lib/python3.12/site-packages/flair/flair_correct.py", line 146, in correct tempoutfile.close() ^^^^^^^^^^^ UnboundLocalError: cannot access local variable 'tempoutfile' where it is not associated with a value Does anyone know how to solve this ? Thank you in advance. — Reply to this email directly, view it on GitHub <#587>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAA23ZICAARWMVXVNF2MSJ33UDPKJAVCNFSM6AAAAACHHOD2WSVHI2DSMVQWIX3LMV43ERDJONRXK43TNFXW4OZYHEZTKNZYGE> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>