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PyUMI fails with an unreadable error #114

@nsyzrantsev

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@nsyzrantsev

Print a normal error message if not a single read has been matched with barcode pattern.

pyigmap/bin/pyumi/run.py

Lines 46 to 49 in c2285b2

processed_fq1, processed_fq2, total_reads_count = extract_umi(fq12_chunks,
fq1_pattern,
fq2_pattern,
args.find_in_reverse_complement)

if not processed_fq1.size or not processed_fq2.size:
  "Something happend wrong with parsing barcode from FASTQ..."

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    invalidThis doesn't seem rightsteps/pyumiumi preprocessing step

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